Strain Fitness in Erwinia amylovora T8 around OLJFJH_01270

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01260 and OLJFJH_01265 are separated by 2 nucleotidesOLJFJH_01265 and OLJFJH_01270 are separated by 516 nucleotidesOLJFJH_01270 and OLJFJH_01275 are separated by 162 nucleotidesOLJFJH_01275 and OLJFJH_01280 are separated by 2 nucleotides OLJFJH_01260: OLJFJH_01260 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 186,439 to 187,377 _01260 OLJFJH_01265: OLJFJH_01265 - division/cell wall cluster transcriptional repressor MraZ, at 187,380 to 187,838 _01265 OLJFJH_01270: OLJFJH_01270 - catabolite repressor/activator, at 188,355 to 189,365 _01270 OLJFJH_01275: OLJFJH_01275 - acetolactate synthase small subunit, at 189,528 to 190,019 _01275 OLJFJH_01280: OLJFJH_01280 - acetolactate synthase 3 large subunit, at 190,022 to 191,746 _01280 Position (kb) 188 189 190Strain fitness (log2 ratio) -2 -1 0 1 2at 187.378 kb on - strandat 187.382 kb on - strandat 187.382 kb on - strandat 187.382 kb on - strandat 187.443 kb on - strand, within OLJFJH_01265at 187.443 kb on - strand, within OLJFJH_01265at 187.443 kb on - strand, within OLJFJH_01265at 187.494 kb on - strand, within OLJFJH_01265at 187.904 kb on - strandat 187.997 kb on + strandat 187.998 kb on - strandat 188.080 kb on + strandat 188.129 kb on + strandat 188.141 kb on + strandat 188.180 kb on + strandat 188.183 kb on - strandat 188.184 kb on + strandat 188.339 kb on + strandat 188.352 kb on + strandat 188.418 kb on + strandat 188.598 kb on - strand, within OLJFJH_01270at 188.598 kb on - strand, within OLJFJH_01270at 188.637 kb on - strand, within OLJFJH_01270at 188.655 kb on - strand, within OLJFJH_01270at 188.671 kb on + strand, within OLJFJH_01270at 188.671 kb on + strand, within OLJFJH_01270at 188.719 kb on + strand, within OLJFJH_01270at 188.719 kb on + strand, within OLJFJH_01270at 188.719 kb on + strand, within OLJFJH_01270at 188.720 kb on - strand, within OLJFJH_01270at 188.723 kb on + strand, within OLJFJH_01270at 188.933 kb on + strand, within OLJFJH_01270at 188.965 kb on + strand, within OLJFJH_01270at 188.966 kb on - strand, within OLJFJH_01270at 188.966 kb on - strand, within OLJFJH_01270at 189.012 kb on + strand, within OLJFJH_01270at 189.013 kb on - strand, within OLJFJH_01270at 189.013 kb on - strand, within OLJFJH_01270at 189.121 kb on + strand, within OLJFJH_01270at 189.122 kb on - strand, within OLJFJH_01270at 189.175 kb on - strand, within OLJFJH_01270at 189.176 kb on + strand, within OLJFJH_01270at 189.176 kb on + strand, within OLJFJH_01270at 189.177 kb on - strand, within OLJFJH_01270at 189.177 kb on - strand, within OLJFJH_01270at 189.210 kb on + strand, within OLJFJH_01270at 189.226 kb on + strand, within OLJFJH_01270at 189.227 kb on - strand, within OLJFJH_01270at 189.227 kb on - strand, within OLJFJH_01270at 189.227 kb on - strand, within OLJFJH_01270at 189.227 kb on - strand, within OLJFJH_01270at 189.269 kb on + strandat 189.269 kb on + strandat 189.310 kb on + strandat 189.311 kb on - strandat 189.311 kb on - strandat 189.368 kb on + strandat 189.486 kb on + strandat 189.539 kb on + strandat 189.540 kb on - strandat 189.662 kb on - strand, within OLJFJH_01275at 190.008 kb on + strandat 190.008 kb on + strandat 190.008 kb on + strandat 190.009 kb on - strandat 190.009 kb on - strandat 190.019 kb on + strandat 190.020 kb on - strandat 190.023 kb on + strandat 190.023 kb on + strandat 190.024 kb on - strandat 190.024 kb on - strandat 190.024 kb on - strandat 190.024 kb on - strandat 190.076 kb on - strandat 190.215 kb on + strand, within OLJFJH_01280at 190.215 kb on + strand, within OLJFJH_01280at 190.216 kb on - strand, within OLJFJH_01280at 190.255 kb on + strand, within OLJFJH_01280at 190.257 kb on + strand, within OLJFJH_01280at 190.257 kb on + strand, within OLJFJH_01280at 190.257 kb on + strand, within OLJFJH_01280at 190.257 kb on + strand, within OLJFJH_01280at 190.257 kb on + strand, within OLJFJH_01280at 190.258 kb on - strand, within OLJFJH_01280at 190.258 kb on - strand, within OLJFJH_01280at 190.258 kb on - strand, within OLJFJH_01280at 190.258 kb on - strand, within OLJFJH_01280at 190.281 kb on + strand, within OLJFJH_01280at 190.282 kb on - strand, within OLJFJH_01280at 190.282 kb on - strand, within OLJFJH_01280

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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187,378 - +0.1
187,382 - -0.1
187,382 - +0.4
187,382 - -0.2
187,443 - OLJFJH_01265 0.14 -0.0
187,443 - OLJFJH_01265 0.14 -0.0
187,443 - OLJFJH_01265 0.14 -0.1
187,494 - OLJFJH_01265 0.25 -0.2
187,904 - +0.2
187,997 + -0.5
187,998 - +0.1
188,080 + +0.3
188,129 + -0.3
188,141 + -0.0
188,180 + +0.1
188,183 - -0.7
188,184 + -0.8
188,339 + +0.0
188,352 + -0.2
188,418 + +1.0
188,598 - OLJFJH_01270 0.24 -1.2
188,598 - OLJFJH_01270 0.24 -0.7
188,637 - OLJFJH_01270 0.28 -0.3
188,655 - OLJFJH_01270 0.30 -1.0
188,671 + OLJFJH_01270 0.31 -1.5
188,671 + OLJFJH_01270 0.31 -0.3
188,719 + OLJFJH_01270 0.36 -0.3
188,719 + OLJFJH_01270 0.36 +0.1
188,719 + OLJFJH_01270 0.36 +0.1
188,720 - OLJFJH_01270 0.36 +0.5
188,723 + OLJFJH_01270 0.36 +0.1
188,933 + OLJFJH_01270 0.57 -0.9
188,965 + OLJFJH_01270 0.60 +1.0
188,966 - OLJFJH_01270 0.60 -0.5
188,966 - OLJFJH_01270 0.60 -0.8
189,012 + OLJFJH_01270 0.65 -0.5
189,013 - OLJFJH_01270 0.65 +0.1
189,013 - OLJFJH_01270 0.65 +0.1
189,121 + OLJFJH_01270 0.76 +0.2
189,122 - OLJFJH_01270 0.76 -1.2
189,175 - OLJFJH_01270 0.81 -0.8
189,176 + OLJFJH_01270 0.81 -1.9
189,176 + OLJFJH_01270 0.81 -0.2
189,177 - OLJFJH_01270 0.81 +0.8
189,177 - OLJFJH_01270 0.81 -0.3
189,210 + OLJFJH_01270 0.85 -1.0
189,226 + OLJFJH_01270 0.86 -1.0
189,227 - OLJFJH_01270 0.86 -1.5
189,227 - OLJFJH_01270 0.86 -0.7
189,227 - OLJFJH_01270 0.86 -1.0
189,227 - OLJFJH_01270 0.86 -1.0
189,269 + -1.0
189,269 + -1.4
189,310 + -0.0
189,311 - -0.6
189,311 - -0.5
189,368 + -0.0
189,486 + -0.1
189,539 + +0.6
189,540 - -0.0
189,662 - OLJFJH_01275 0.27 -0.0
190,008 + -0.6
190,008 + -0.2
190,008 + -0.2
190,009 - +0.5
190,009 - +0.3
190,019 + -0.2
190,020 - -0.7
190,023 + +0.0
190,023 + -0.1
190,024 - -0.1
190,024 - +0.2
190,024 - +0.4
190,024 - -0.1
190,076 - -0.3
190,215 + OLJFJH_01280 0.11 +0.4
190,215 + OLJFJH_01280 0.11 +0.5
190,216 - OLJFJH_01280 0.11 -0.1
190,255 + OLJFJH_01280 0.14 +2.2
190,257 + OLJFJH_01280 0.14 +0.4
190,257 + OLJFJH_01280 0.14 +2.2
190,257 + OLJFJH_01280 0.14 +0.1
190,257 + OLJFJH_01280 0.14 -0.0
190,257 + OLJFJH_01280 0.14 +0.2
190,258 - OLJFJH_01280 0.14 -0.5
190,258 - OLJFJH_01280 0.14 -0.2
190,258 - OLJFJH_01280 0.14 -0.0
190,258 - OLJFJH_01280 0.14 +0.1
190,281 + OLJFJH_01280 0.15 +0.6
190,282 - OLJFJH_01280 0.15 -0.8
190,282 - OLJFJH_01280 0.15 -0.7

Or see this region's nucleotide sequence