Strain Fitness in Erwinia amylovora T8 around OLJFJH_00960

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_00955 and OLJFJH_00960 are separated by 40 nucleotidesOLJFJH_00960 and OLJFJH_00965 are separated by 10 nucleotidesOLJFJH_00965 and OLJFJH_00970 overlap by 4 nucleotides OLJFJH_00955: OLJFJH_00955 - Zn-dependent oxidoreductase, at 115,345 to 116,331 _00955 OLJFJH_00960: OLJFJH_00960 - biotin transporter BioY, at 116,372 to 116,911 _00960 OLJFJH_00965: OLJFJH_00965 - energy-coupling factor transporter transmembrane protein EcfT, at 116,922 to 117,539 _00965 OLJFJH_00970: OLJFJH_00970 - cobalt ABC transporter ATP-binding protein, at 117,536 to 118,210 _00970 Position (kb) 116 117Strain fitness (log2 ratio) -1 0 1at 115.514 kb on - strand, within OLJFJH_00955at 115.514 kb on - strand, within OLJFJH_00955at 115.524 kb on + strand, within OLJFJH_00955at 115.524 kb on + strand, within OLJFJH_00955at 115.525 kb on - strand, within OLJFJH_00955at 115.645 kb on + strand, within OLJFJH_00955at 115.646 kb on - strand, within OLJFJH_00955at 115.717 kb on + strand, within OLJFJH_00955at 115.843 kb on - strand, within OLJFJH_00955at 116.058 kb on + strand, within OLJFJH_00955at 116.251 kb on + strandat 116.529 kb on + strand, within OLJFJH_00960at 116.529 kb on + strand, within OLJFJH_00960at 116.530 kb on - strand, within OLJFJH_00960at 116.589 kb on + strand, within OLJFJH_00960at 116.669 kb on - strand, within OLJFJH_00960at 116.889 kb on + strandat 116.889 kb on + strandat 116.890 kb on - strandat 116.896 kb on + strandat 116.911 kb on + strandat 116.911 kb on + strandat 116.911 kb on + strandat 116.912 kb on - strandat 116.915 kb on + strandat 116.916 kb on - strandat 116.916 kb on - strandat 116.916 kb on - strandat 116.930 kb on + strandat 116.930 kb on + strandat 116.930 kb on + strandat 116.931 kb on - strandat 117.101 kb on + strand, within OLJFJH_00965at 117.155 kb on + strand, within OLJFJH_00965at 117.155 kb on + strand, within OLJFJH_00965at 117.155 kb on + strand, within OLJFJH_00965at 117.156 kb on - strand, within OLJFJH_00965at 117.157 kb on + strand, within OLJFJH_00965at 117.157 kb on + strand, within OLJFJH_00965at 117.157 kb on + strand, within OLJFJH_00965at 117.157 kb on + strand, within OLJFJH_00965at 117.157 kb on + strand, within OLJFJH_00965at 117.157 kb on + strand, within OLJFJH_00965at 117.158 kb on - strand, within OLJFJH_00965at 117.158 kb on - strand, within OLJFJH_00965at 117.158 kb on - strand, within OLJFJH_00965at 117.158 kb on - strand, within OLJFJH_00965at 117.158 kb on - strand, within OLJFJH_00965at 117.258 kb on + strand, within OLJFJH_00965at 117.259 kb on - strand, within OLJFJH_00965at 117.259 kb on - strand, within OLJFJH_00965at 117.342 kb on - strand, within OLJFJH_00965at 117.372 kb on - strand, within OLJFJH_00965at 117.523 kb on + strandat 117.523 kb on + strandat 117.524 kb on - strandat 117.524 kb on - strandat 117.555 kb on + strandat 117.555 kb on + strandat 117.555 kb on + strandat 117.555 kb on + strandat 117.556 kb on - strandat 117.611 kb on + strand, within OLJFJH_00970at 117.709 kb on + strand, within OLJFJH_00970at 117.753 kb on + strand, within OLJFJH_00970at 117.753 kb on + strand, within OLJFJH_00970at 117.754 kb on - strand, within OLJFJH_00970

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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115,514 - OLJFJH_00955 0.17 -0.1
115,514 - OLJFJH_00955 0.17 -0.3
115,524 + OLJFJH_00955 0.18 -0.2
115,524 + OLJFJH_00955 0.18 -0.4
115,525 - OLJFJH_00955 0.18 -0.1
115,645 + OLJFJH_00955 0.30 +0.4
115,646 - OLJFJH_00955 0.30 -0.3
115,717 + OLJFJH_00955 0.38 -0.3
115,843 - OLJFJH_00955 0.50 +0.6
116,058 + OLJFJH_00955 0.72 -0.0
116,251 + +0.4
116,529 + OLJFJH_00960 0.29 -0.8
116,529 + OLJFJH_00960 0.29 -1.0
116,530 - OLJFJH_00960 0.29 -0.3
116,589 + OLJFJH_00960 0.40 -0.0
116,669 - OLJFJH_00960 0.55 -0.5
116,889 + +0.1
116,889 + +0.2
116,890 - -0.3
116,896 + +0.1
116,911 + +0.2
116,911 + -0.1
116,911 + -0.1
116,912 - -0.5
116,915 + +0.6
116,916 - +0.2
116,916 - -0.1
116,916 - -0.2
116,930 + +0.2
116,930 + -0.2
116,930 + -0.2
116,931 - -0.9
117,101 + OLJFJH_00965 0.29 -0.0
117,155 + OLJFJH_00965 0.38 -0.3
117,155 + OLJFJH_00965 0.38 +0.5
117,155 + OLJFJH_00965 0.38 +0.0
117,156 - OLJFJH_00965 0.38 -0.1
117,157 + OLJFJH_00965 0.38 +1.0
117,157 + OLJFJH_00965 0.38 -0.4
117,157 + OLJFJH_00965 0.38 +0.4
117,157 + OLJFJH_00965 0.38 +0.7
117,157 + OLJFJH_00965 0.38 +0.2
117,157 + OLJFJH_00965 0.38 +0.2
117,158 - OLJFJH_00965 0.38 +0.1
117,158 - OLJFJH_00965 0.38 +0.6
117,158 - OLJFJH_00965 0.38 +0.2
117,158 - OLJFJH_00965 0.38 -0.7
117,158 - OLJFJH_00965 0.38 -0.9
117,258 + OLJFJH_00965 0.54 -0.1
117,259 - OLJFJH_00965 0.55 -0.9
117,259 - OLJFJH_00965 0.55 +0.8
117,342 - OLJFJH_00965 0.68 -1.3
117,372 - OLJFJH_00965 0.73 -0.2
117,523 + -0.2
117,523 + -0.4
117,524 - -0.4
117,524 - -0.9
117,555 + -0.6
117,555 + -0.2
117,555 + +0.4
117,555 + -0.1
117,556 - +0.0
117,611 + OLJFJH_00970 0.11 -1.4
117,709 + OLJFJH_00970 0.26 -0.1
117,753 + OLJFJH_00970 0.32 -0.5
117,753 + OLJFJH_00970 0.32 +0.5
117,754 - OLJFJH_00970 0.32 -0.2

Or see this region's nucleotide sequence