Strain Fitness in Erwinia amylovora T8 around OLJFJH_00745

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_00735 and OLJFJH_00740 are separated by 12 nucleotidesOLJFJH_00740 and OLJFJH_00745 are separated by 147 nucleotidesOLJFJH_00745 and OLJFJH_00750 are separated by 126 nucleotides OLJFJH_00735: OLJFJH_00735 - type IV secretion protein Rhs, at 61,867 to 66,108 _00735 OLJFJH_00740: OLJFJH_00740 - DUF1795 domain-containing protein, at 66,121 to 66,573 _00740 OLJFJH_00745: OLJFJH_00745 - bifunctional glycosyl transferase/transpeptidase, at 66,721 to 69,237 _00745 OLJFJH_00750: OLJFJH_00750 - ATP-dependent helicase HrpB, at 69,364 to 71,802 _00750 Position (kb) 66 67 68 69 70Strain fitness (log2 ratio) -2 -1 0 1at 66.735 kb on + strandat 66.736 kb on - strandat 66.736 kb on - strandat 66.736 kb on - strandat 66.816 kb on + strandat 66.816 kb on + strandat 66.816 kb on + strandat 66.816 kb on + strandat 66.816 kb on + strandat 66.816 kb on + strandat 66.817 kb on - strandat 66.817 kb on - strandat 66.817 kb on - strandat 66.817 kb on - strandat 66.817 kb on - strandat 66.817 kb on - strandat 66.817 kb on - strandat 66.957 kb on + strandat 66.958 kb on - strandat 67.044 kb on - strand, within OLJFJH_00745at 67.090 kb on + strand, within OLJFJH_00745at 67.091 kb on - strand, within OLJFJH_00745at 67.144 kb on - strand, within OLJFJH_00745at 67.144 kb on - strand, within OLJFJH_00745at 67.164 kb on + strand, within OLJFJH_00745at 67.165 kb on - strand, within OLJFJH_00745at 67.175 kb on + strand, within OLJFJH_00745at 67.229 kb on + strand, within OLJFJH_00745at 67.230 kb on - strand, within OLJFJH_00745at 67.289 kb on + strand, within OLJFJH_00745at 67.290 kb on - strand, within OLJFJH_00745at 67.435 kb on + strand, within OLJFJH_00745at 67.619 kb on - strand, within OLJFJH_00745at 67.688 kb on + strand, within OLJFJH_00745at 67.688 kb on + strand, within OLJFJH_00745at 67.689 kb on - strand, within OLJFJH_00745at 67.746 kb on - strand, within OLJFJH_00745at 67.851 kb on + strand, within OLJFJH_00745at 67.995 kb on + strand, within OLJFJH_00745at 68.017 kb on + strand, within OLJFJH_00745at 68.056 kb on + strand, within OLJFJH_00745at 68.057 kb on - strand, within OLJFJH_00745at 68.057 kb on - strand, within OLJFJH_00745at 68.158 kb on - strand, within OLJFJH_00745at 68.159 kb on + strand, within OLJFJH_00745at 68.160 kb on - strand, within OLJFJH_00745at 68.160 kb on - strand, within OLJFJH_00745at 68.160 kb on - strand, within OLJFJH_00745at 68.237 kb on + strand, within OLJFJH_00745at 68.238 kb on - strand, within OLJFJH_00745at 68.238 kb on - strand, within OLJFJH_00745at 68.241 kb on - strand, within OLJFJH_00745at 68.241 kb on - strand, within OLJFJH_00745at 68.241 kb on - strand, within OLJFJH_00745at 68.295 kb on - strand, within OLJFJH_00745at 68.295 kb on - strand, within OLJFJH_00745at 68.310 kb on - strand, within OLJFJH_00745at 68.363 kb on + strand, within OLJFJH_00745at 68.363 kb on + strand, within OLJFJH_00745at 68.363 kb on + strand, within OLJFJH_00745at 68.363 kb on + strand, within OLJFJH_00745at 68.363 kb on + strand, within OLJFJH_00745at 68.364 kb on - strand, within OLJFJH_00745at 68.364 kb on - strand, within OLJFJH_00745at 68.440 kb on - strand, within OLJFJH_00745at 68.473 kb on - strand, within OLJFJH_00745at 68.473 kb on - strand, within OLJFJH_00745at 68.502 kb on - strand, within OLJFJH_00745at 68.525 kb on + strand, within OLJFJH_00745at 68.525 kb on + strand, within OLJFJH_00745at 68.830 kb on + strand, within OLJFJH_00745at 68.882 kb on + strand, within OLJFJH_00745at 68.882 kb on + strand, within OLJFJH_00745at 68.882 kb on + strand, within OLJFJH_00745at 68.883 kb on - strand, within OLJFJH_00745at 68.883 kb on - strand, within OLJFJH_00745at 68.911 kb on - strand, within OLJFJH_00745at 68.947 kb on - strand, within OLJFJH_00745at 69.030 kb on + strandat 69.030 kb on + strandat 69.034 kb on + strandat 69.034 kb on + strandat 69.035 kb on - strandat 69.035 kb on - strandat 69.081 kb on + strandat 69.097 kb on + strandat 69.097 kb on + strandat 69.098 kb on - strandat 69.134 kb on + strandat 69.278 kb on - strandat 69.406 kb on - strandat 69.435 kb on + strandat 69.596 kb on + strandat 69.596 kb on + strandat 69.596 kb on + strandat 69.680 kb on + strand, within OLJFJH_00750at 69.680 kb on + strand, within OLJFJH_00750at 69.681 kb on - strand, within OLJFJH_00750at 69.681 kb on - strand, within OLJFJH_00750at 69.736 kb on + strand, within OLJFJH_00750at 69.736 kb on + strand, within OLJFJH_00750at 69.927 kb on + strand, within OLJFJH_00750

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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66,735 + +0.1
66,736 - -0.1
66,736 - +0.3
66,736 - -0.3
66,816 + -0.1
66,816 + -0.0
66,816 + +1.4
66,816 + -0.3
66,816 + -0.0
66,816 + +0.1
66,817 - -0.7
66,817 - +0.5
66,817 - -0.2
66,817 - -0.1
66,817 - -0.3
66,817 - +0.4
66,817 - -0.3
66,957 + -0.5
66,958 - -0.9
67,044 - OLJFJH_00745 0.13 +0.4
67,090 + OLJFJH_00745 0.15 -0.4
67,091 - OLJFJH_00745 0.15 -2.0
67,144 - OLJFJH_00745 0.17 -0.1
67,144 - OLJFJH_00745 0.17 -0.6
67,164 + OLJFJH_00745 0.18 -0.7
67,165 - OLJFJH_00745 0.18 -0.6
67,175 + OLJFJH_00745 0.18 -0.3
67,229 + OLJFJH_00745 0.20 +0.1
67,230 - OLJFJH_00745 0.20 +1.1
67,289 + OLJFJH_00745 0.23 -0.9
67,290 - OLJFJH_00745 0.23 -0.6
67,435 + OLJFJH_00745 0.28 +0.3
67,619 - OLJFJH_00745 0.36 -0.4
67,688 + OLJFJH_00745 0.38 -1.1
67,688 + OLJFJH_00745 0.38 -0.6
67,689 - OLJFJH_00745 0.38 -1.2
67,746 - OLJFJH_00745 0.41 -0.6
67,851 + OLJFJH_00745 0.45 -0.6
67,995 + OLJFJH_00745 0.51 -0.7
68,017 + OLJFJH_00745 0.51 -0.3
68,056 + OLJFJH_00745 0.53 -0.3
68,057 - OLJFJH_00745 0.53 -0.9
68,057 - OLJFJH_00745 0.53 -1.1
68,158 - OLJFJH_00745 0.57 -0.3
68,159 + OLJFJH_00745 0.57 +0.4
68,160 - OLJFJH_00745 0.57 +0.2
68,160 - OLJFJH_00745 0.57 -0.9
68,160 - OLJFJH_00745 0.57 -0.1
68,237 + OLJFJH_00745 0.60 -0.2
68,238 - OLJFJH_00745 0.60 -0.2
68,238 - OLJFJH_00745 0.60 -0.5
68,241 - OLJFJH_00745 0.60 -0.7
68,241 - OLJFJH_00745 0.60 -0.8
68,241 - OLJFJH_00745 0.60 -0.8
68,295 - OLJFJH_00745 0.63 -0.5
68,295 - OLJFJH_00745 0.63 -0.4
68,310 - OLJFJH_00745 0.63 -0.7
68,363 + OLJFJH_00745 0.65 -1.2
68,363 + OLJFJH_00745 0.65 -0.3
68,363 + OLJFJH_00745 0.65 -0.2
68,363 + OLJFJH_00745 0.65 -0.2
68,363 + OLJFJH_00745 0.65 +0.1
68,364 - OLJFJH_00745 0.65 -0.4
68,364 - OLJFJH_00745 0.65 -0.6
68,440 - OLJFJH_00745 0.68 -0.0
68,473 - OLJFJH_00745 0.70 -1.0
68,473 - OLJFJH_00745 0.70 -0.7
68,502 - OLJFJH_00745 0.71 -0.6
68,525 + OLJFJH_00745 0.72 -0.7
68,525 + OLJFJH_00745 0.72 -0.8
68,830 + OLJFJH_00745 0.84 -0.7
68,882 + OLJFJH_00745 0.86 -0.6
68,882 + OLJFJH_00745 0.86 +0.4
68,882 + OLJFJH_00745 0.86 -1.9
68,883 - OLJFJH_00745 0.86 -0.7
68,883 - OLJFJH_00745 0.86 +0.4
68,911 - OLJFJH_00745 0.87 -0.2
68,947 - OLJFJH_00745 0.88 -0.0
69,030 + +0.1
69,030 + -0.5
69,034 + -0.1
69,034 + -1.9
69,035 - -0.0
69,035 - -0.7
69,081 + -1.5
69,097 + -0.3
69,097 + +0.6
69,098 - -0.6
69,134 + -0.2
69,278 - -0.6
69,406 - -0.3
69,435 + -0.1
69,596 + -0.1
69,596 + -0.0
69,596 + -0.1
69,680 + OLJFJH_00750 0.13 -0.0
69,680 + OLJFJH_00750 0.13 -0.2
69,681 - OLJFJH_00750 0.13 -0.0
69,681 - OLJFJH_00750 0.13 -0.2
69,736 + OLJFJH_00750 0.15 -0.0
69,736 + OLJFJH_00750 0.15 -0.3
69,927 + OLJFJH_00750 0.23 -0.2

Or see this region's nucleotide sequence