Strain Fitness in Erwinia amylovora T8 around OLJFJH_00700

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_00690 and OLJFJH_00695 overlap by 1 nucleotidesOLJFJH_00695 and OLJFJH_00700 are separated by 14 nucleotidesOLJFJH_00700 and OLJFJH_00705 are separated by 48 nucleotides OLJFJH_00690: OLJFJH_00690 - Fe(3+)-hydroxamate ABC transporter permease FhuB, at 51,771 to 53,747 _00690 OLJFJH_00695: OLJFJH_00695 - Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD, at 53,747 to 54,625 _00695 OLJFJH_00700: OLJFJH_00700 - Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC, at 54,640 to 55,434 _00700 OLJFJH_00705: OLJFJH_00705 - ferrichrome porin FhuA, at 55,483 to 57,699 _00705 Position (kb) 54 55 56Strain fitness (log2 ratio) -2 -1 0 1at 53.936 kb on + strand, within OLJFJH_00695at 53.937 kb on - strand, within OLJFJH_00695at 54.251 kb on - strand, within OLJFJH_00695at 54.293 kb on - strand, within OLJFJH_00695at 54.445 kb on - strand, within OLJFJH_00695at 54.450 kb on + strand, within OLJFJH_00695at 54.450 kb on + strand, within OLJFJH_00695at 54.451 kb on - strand, within OLJFJH_00695at 54.451 kb on - strand, within OLJFJH_00695at 54.451 kb on - strand, within OLJFJH_00695at 54.547 kb on - strandat 54.631 kb on + strandat 54.645 kb on - strandat 54.704 kb on + strandat 54.704 kb on + strandat 54.704 kb on + strandat 54.704 kb on + strandat 54.705 kb on - strandat 54.705 kb on - strandat 54.705 kb on - strandat 54.705 kb on - strandat 54.705 kb on - strandat 54.707 kb on - strandat 54.707 kb on - strandat 55.173 kb on - strand, within OLJFJH_00700at 55.173 kb on - strand, within OLJFJH_00700at 55.173 kb on - strand, within OLJFJH_00700at 55.303 kb on - strand, within OLJFJH_00700at 55.303 kb on - strand, within OLJFJH_00700at 55.357 kb on + strandat 55.565 kb on + strandat 55.594 kb on - strandat 55.662 kb on + strandat 55.662 kb on + strandat 55.662 kb on + strandat 55.662 kb on + strandat 55.663 kb on - strandat 55.710 kb on + strand, within OLJFJH_00705at 55.711 kb on - strand, within OLJFJH_00705at 55.713 kb on + strand, within OLJFJH_00705at 55.754 kb on + strand, within OLJFJH_00705at 55.755 kb on - strand, within OLJFJH_00705at 55.808 kb on + strand, within OLJFJH_00705at 55.809 kb on - strand, within OLJFJH_00705at 55.809 kb on - strand, within OLJFJH_00705at 55.809 kb on - strand, within OLJFJH_00705at 55.830 kb on + strand, within OLJFJH_00705at 55.831 kb on - strand, within OLJFJH_00705at 55.868 kb on + strand, within OLJFJH_00705at 55.868 kb on + strand, within OLJFJH_00705at 55.868 kb on + strand, within OLJFJH_00705at 55.868 kb on + strand, within OLJFJH_00705at 55.868 kb on + strand, within OLJFJH_00705at 55.872 kb on + strand, within OLJFJH_00705at 55.873 kb on - strand, within OLJFJH_00705at 55.898 kb on + strand, within OLJFJH_00705at 55.898 kb on + strand, within OLJFJH_00705at 55.898 kb on + strand, within OLJFJH_00705at 55.898 kb on + strand, within OLJFJH_00705at 55.898 kb on + strand, within OLJFJH_00705at 55.898 kb on + strand, within OLJFJH_00705at 55.899 kb on - strand, within OLJFJH_00705at 55.899 kb on - strand, within OLJFJH_00705at 55.899 kb on - strand, within OLJFJH_00705at 55.899 kb on - strand, within OLJFJH_00705at 56.105 kb on + strand, within OLJFJH_00705at 56.133 kb on + strand, within OLJFJH_00705at 56.134 kb on - strand, within OLJFJH_00705at 56.142 kb on + strand, within OLJFJH_00705at 56.360 kb on + strand, within OLJFJH_00705at 56.390 kb on + strand, within OLJFJH_00705at 56.397 kb on - strand, within OLJFJH_00705

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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53,936 + OLJFJH_00695 0.22 -2.0
53,937 - OLJFJH_00695 0.22 +0.4
54,251 - OLJFJH_00695 0.57 -0.9
54,293 - OLJFJH_00695 0.62 -0.8
54,445 - OLJFJH_00695 0.79 -0.0
54,450 + OLJFJH_00695 0.80 -0.0
54,450 + OLJFJH_00695 0.80 -0.0
54,451 - OLJFJH_00695 0.80 -0.9
54,451 - OLJFJH_00695 0.80 -0.2
54,451 - OLJFJH_00695 0.80 -2.2
54,547 - -1.0
54,631 + -0.7
54,645 - -0.3
54,704 + -1.6
54,704 + -1.0
54,704 + -1.5
54,704 + -1.2
54,705 - +1.1
54,705 - -0.9
54,705 - -0.8
54,705 - +0.5
54,705 - -1.4
54,707 - -1.0
54,707 - -1.4
55,173 - OLJFJH_00700 0.67 -1.4
55,173 - OLJFJH_00700 0.67 -1.9
55,173 - OLJFJH_00700 0.67 -0.6
55,303 - OLJFJH_00700 0.83 -0.3
55,303 - OLJFJH_00700 0.83 -0.0
55,357 + -0.5
55,565 + -0.1
55,594 - -0.1
55,662 + -0.4
55,662 + +0.1
55,662 + -0.1
55,662 + -0.9
55,663 - -0.0
55,710 + OLJFJH_00705 0.10 +0.3
55,711 - OLJFJH_00705 0.10 -0.5
55,713 + OLJFJH_00705 0.10 +0.2
55,754 + OLJFJH_00705 0.12 +0.4
55,755 - OLJFJH_00705 0.12 +0.2
55,808 + OLJFJH_00705 0.15 +1.0
55,809 - OLJFJH_00705 0.15 +0.1
55,809 - OLJFJH_00705 0.15 +0.1
55,809 - OLJFJH_00705 0.15 +0.1
55,830 + OLJFJH_00705 0.16 +0.7
55,831 - OLJFJH_00705 0.16 -0.2
55,868 + OLJFJH_00705 0.17 -0.4
55,868 + OLJFJH_00705 0.17 -1.5
55,868 + OLJFJH_00705 0.17 +0.1
55,868 + OLJFJH_00705 0.17 -0.6
55,868 + OLJFJH_00705 0.17 +1.0
55,872 + OLJFJH_00705 0.18 +0.4
55,873 - OLJFJH_00705 0.18 -0.1
55,898 + OLJFJH_00705 0.19 -0.6
55,898 + OLJFJH_00705 0.19 +0.0
55,898 + OLJFJH_00705 0.19 +1.0
55,898 + OLJFJH_00705 0.19 -0.3
55,898 + OLJFJH_00705 0.19 +0.2
55,898 + OLJFJH_00705 0.19 -0.1
55,899 - OLJFJH_00705 0.19 +0.2
55,899 - OLJFJH_00705 0.19 +0.0
55,899 - OLJFJH_00705 0.19 -0.1
55,899 - OLJFJH_00705 0.19 +0.1
56,105 + OLJFJH_00705 0.28 -0.1
56,133 + OLJFJH_00705 0.29 +0.4
56,134 - OLJFJH_00705 0.29 -0.3
56,142 + OLJFJH_00705 0.30 -0.0
56,360 + OLJFJH_00705 0.40 +0.4
56,390 + OLJFJH_00705 0.41 +0.1
56,397 - OLJFJH_00705 0.41 -0.4

Or see this region's nucleotide sequence