Strain Fitness in Erwinia amylovora T8 around OLJFJH_00595

Experiment: FE-KB2-T1 (Control KB Rep 2 Time 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_00590 and OLJFJH_00595 are separated by 54 nucleotidesOLJFJH_00595 and OLJFJH_00600 are separated by 9 nucleotidesOLJFJH_00600 and OLJFJH_00605 are separated by 18 nucleotides OLJFJH_00590: OLJFJH_00590 - Outer membrane protein assembly factor BamA, at 29,286 to 31,697 _00590 OLJFJH_00595: OLJFJH_00595 - sigma E protease regulator RseP, at 31,752 to 33,101 _00595 OLJFJH_00600: OLJFJH_00600 - phosphatidate cytidylyltransferase, at 33,111 to 33,968 _00600 OLJFJH_00605: OLJFJH_00605 - (2E 6E)-farnesyl-diphosphate-specific ditrans polycis-undecaprenyl-diphosphate synthase, at 33,987 to 34,739 _00605 Position (kb) 31 32 33 34Strain fitness (log2 ratio) -1 0 1at 31.823 kb on - strandat 31.903 kb on - strand, within OLJFJH_00595at 31.903 kb on - strand, within OLJFJH_00595at 31.903 kb on - strand, within OLJFJH_00595at 31.973 kb on - strand, within OLJFJH_00595at 31.973 kb on - strand, within OLJFJH_00595at 32.184 kb on - strand, within OLJFJH_00595at 32.184 kb on - strand, within OLJFJH_00595at 32.259 kb on - strand, within OLJFJH_00595at 32.304 kb on - strand, within OLJFJH_00595at 32.361 kb on - strand, within OLJFJH_00595at 32.649 kb on - strand, within OLJFJH_00595at 32.649 kb on - strand, within OLJFJH_00595at 32.741 kb on + strand, within OLJFJH_00595at 32.927 kb on - strand, within OLJFJH_00595at 33.048 kb on + strandat 33.049 kb on - strandat 33.049 kb on - strandat 33.049 kb on - strandat 33.091 kb on - strandat 33.113 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-KB2-T1 (Control KB Rep 2 Time 1)
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31,823 - -0.5
31,903 - OLJFJH_00595 0.11 -0.2
31,903 - OLJFJH_00595 0.11 -1.0
31,903 - OLJFJH_00595 0.11 -1.0
31,973 - OLJFJH_00595 0.16 -0.5
31,973 - OLJFJH_00595 0.16 -0.6
32,184 - OLJFJH_00595 0.32 -1.0
32,184 - OLJFJH_00595 0.32 -1.2
32,259 - OLJFJH_00595 0.38 -0.4
32,304 - OLJFJH_00595 0.41 -0.7
32,361 - OLJFJH_00595 0.45 -0.1
32,649 - OLJFJH_00595 0.66 -0.8
32,649 - OLJFJH_00595 0.66 -0.5
32,741 + OLJFJH_00595 0.73 -1.7
32,927 - OLJFJH_00595 0.87 -0.9
33,048 + -1.7
33,049 - -0.8
33,049 - -0.9
33,049 - -0.4
33,091 - -0.6
33,113 - -0.4

Or see this region's nucleotide sequence