Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF987 and GFF988 are separated by 133 nucleotides GFF988 and GFF989 are separated by 31 nucleotides GFF989 and GFF990 are separated by 445 nucleotides
GFF987 - Chromosome partition protein Smc, at 218,310 to 221,087
GFF987
GFF988 - hypothetical protein, at 221,221 to 221,523
GFF988
GFF989 - hypothetical protein, at 221,555 to 221,839
GFF989
GFF990 - Toluene efflux pump outer membrane protein TtgF, at 222,285 to 223,862
GFF990
Position (kb) 221
222 Strain fitness (log2 ratio) -2
-1
0
1 at 220.599 kb on + strand, within GFF987 at 220.599 kb on + strand, within GFF987 at 220.599 kb on + strand, within GFF987 at 220.599 kb on + strand, within GFF987 at 220.599 kb on + strand, within GFF987 at 220.600 kb on - strand, within GFF987 at 220.600 kb on - strand, within GFF987 at 220.601 kb on + strand, within GFF987 at 220.601 kb on + strand, within GFF987 at 220.602 kb on - strand, within GFF987 at 220.602 kb on - strand, within GFF987 at 220.617 kb on + strand, within GFF987 at 220.632 kb on + strand, within GFF987 at 220.877 kb on + strand at 220.956 kb on + strand at 220.957 kb on - strand at 220.995 kb on + strand at 220.995 kb on + strand at 220.995 kb on + strand at 220.995 kb on + strand at 220.995 kb on + strand at 220.996 kb on - strand at 220.996 kb on - strand at 221.086 kb on - strand at 221.086 kb on - strand at 221.086 kb on - strand at 221.144 kb on - strand at 221.148 kb on + strand at 221.149 kb on - strand at 221.153 kb on + strand at 221.153 kb on + strand at 221.153 kb on + strand at 221.154 kb on - strand at 221.154 kb on - strand at 221.179 kb on - strand at 221.179 kb on - strand at 221.229 kb on + strand at 221.230 kb on - strand at 221.238 kb on + strand at 221.238 kb on + strand at 221.239 kb on - strand at 221.239 kb on - strand at 221.364 kb on - strand, within GFF988 at 221.364 kb on - strand, within GFF988 at 221.364 kb on - strand, within GFF988 at 221.364 kb on - strand, within GFF988 at 221.370 kb on + strand, within GFF988 at 221.370 kb on + strand, within GFF988 at 221.371 kb on - strand, within GFF988 at 221.371 kb on - strand, within GFF988 at 221.371 kb on - strand, within GFF988 at 221.408 kb on - strand, within GFF988 at 221.408 kb on - strand, within GFF988 at 221.408 kb on - strand, within GFF988 at 221.507 kb on - strand at 221.521 kb on + strand at 221.522 kb on - strand at 221.522 kb on - strand at 221.543 kb on + strand at 221.544 kb on - strand at 221.544 kb on - strand at 221.544 kb on - strand at 221.556 kb on + strand at 221.556 kb on + strand at 221.557 kb on - strand at 221.578 kb on - strand at 221.594 kb on + strand, within GFF989 at 221.594 kb on + strand, within GFF989 at 221.594 kb on + strand, within GFF989 at 221.595 kb on - strand, within GFF989 at 221.595 kb on - strand, within GFF989 at 221.599 kb on - strand, within GFF989 at 221.599 kb on - strand, within GFF989 at 221.652 kb on + strand, within GFF989 at 221.653 kb on - strand, within GFF989 at 221.653 kb on - strand, within GFF989 at 221.728 kb on + strand, within GFF989 at 221.728 kb on + strand, within GFF989 at 221.790 kb on - strand, within GFF989 at 221.794 kb on + strand, within GFF989 at 221.794 kb on + strand, within GFF989 at 221.795 kb on - strand, within GFF989 at 221.795 kb on - strand, within GFF989 at 221.796 kb on + strand, within GFF989 at 221.796 kb on + strand, within GFF989 at 221.817 kb on + strand at 221.818 kb on - strand at 221.818 kb on - strand at 221.865 kb on - strand at 221.898 kb on + strand at 221.898 kb on + strand at 221.899 kb on - strand at 221.956 kb on - strand at 221.956 kb on - strand at 221.960 kb on + strand at 221.961 kb on - strand at 221.961 kb on - strand at 221.961 kb on - strand at 221.995 kb on - strand at 222.003 kb on + strand at 222.004 kb on - strand at 222.013 kb on + strand at 222.014 kb on - strand at 222.035 kb on - strand at 222.059 kb on + strand at 222.059 kb on + strand at 222.059 kb on + strand at 222.059 kb on + strand at 222.059 kb on + strand at 222.059 kb on + strand at 222.060 kb on - strand at 222.065 kb on + strand at 222.065 kb on + strand at 222.066 kb on - strand at 222.066 kb on - strand at 222.103 kb on + strand at 222.103 kb on + strand at 222.103 kb on + strand at 222.103 kb on + strand at 222.103 kb on + strand at 222.104 kb on - strand at 222.104 kb on - strand at 222.104 kb on - strand at 222.104 kb on - strand at 222.104 kb on - strand at 222.142 kb on + strand at 222.189 kb on + strand at 222.190 kb on - strand at 222.190 kb on - strand at 222.198 kb on + strand at 222.198 kb on + strand at 222.198 kb on + strand at 222.198 kb on + strand at 222.198 kb on + strand at 222.198 kb on + strand at 222.199 kb on - strand at 222.199 kb on - strand at 222.238 kb on + strand at 222.239 kb on - strand at 222.240 kb on + strand at 222.240 kb on + strand at 222.241 kb on - strand at 222.241 kb on - strand at 222.255 kb on + strand at 222.256 kb on - strand at 222.283 kb on + strand at 222.461 kb on + strand, within GFF990 at 222.483 kb on - strand, within GFF990 at 222.583 kb on + strand, within GFF990 at 222.621 kb on - strand, within GFF990 at 222.625 kb on + strand, within GFF990 at 222.625 kb on + strand, within GFF990 at 222.651 kb on + strand, within GFF990 at 222.651 kb on + strand, within GFF990 at 222.652 kb on - strand, within GFF990 at 222.652 kb on - strand, within GFF990 at 222.706 kb on + strand, within GFF990 at 222.706 kb on + strand, within GFF990 at 222.706 kb on + strand, within GFF990 at 222.706 kb on + strand, within GFF990 at 222.706 kb on + strand, within GFF990 at 222.707 kb on - strand, within GFF990 at 222.707 kb on - strand, within GFF990 at 222.707 kb on - strand, within GFF990 at 222.707 kb on - strand, within GFF990 at 222.707 kb on - strand, within GFF990 at 222.708 kb on + strand, within GFF990 at 222.709 kb on - strand, within GFF990 at 222.722 kb on + strand, within GFF990 at 222.752 kb on + strand, within GFF990 at 222.752 kb on + strand, within GFF990 at 222.753 kb on - strand, within GFF990 at 222.827 kb on + strand, within GFF990 at 222.827 kb on + strand, within GFF990 at 222.827 kb on + strand, within GFF990 at 222.828 kb on - strand, within GFF990 at 222.828 kb on - strand, within GFF990
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 220,599 + GFF987 0.82 +0.5 220,599 + GFF987 0.82 -0.4 220,599 + GFF987 0.82 -1.2 220,599 + GFF987 0.82 -1.1 220,599 + GFF987 0.82 -1.1 220,600 - GFF987 0.82 +0.9 220,600 - GFF987 0.82 -0.1 220,601 + GFF987 0.82 -0.4 220,601 + GFF987 0.82 -0.5 220,602 - GFF987 0.83 -0.1 220,602 - GFF987 0.83 -0.5 220,617 + GFF987 0.83 -0.3 220,632 + GFF987 0.84 -2.1 220,877 + -1.2 220,956 + +0.9 220,957 - +0.1 220,995 + +0.5 220,995 + -0.9 220,995 + -0.4 220,995 + +0.9 220,995 + +0.5 220,996 - -0.4 220,996 - -0.4 221,086 - -0.9 221,086 - -1.6 221,086 - +0.9 221,144 - +0.7 221,148 + -0.1 221,149 - -0.2 221,153 + -1.9 221,153 + -0.4 221,153 + -2.7 221,154 - -1.4 221,154 - -0.7 221,179 - -0.2 221,179 - +0.0 221,229 + -0.6 221,230 - -1.2 221,238 + +1.0 221,238 + -1.2 221,239 - -0.2 221,239 - -2.3 221,364 - GFF988 0.47 +0.3 221,364 - GFF988 0.47 -1.4 221,364 - GFF988 0.47 -0.3 221,364 - GFF988 0.47 -0.0 221,370 + GFF988 0.49 -1.3 221,370 + GFF988 0.49 +0.6 221,371 - GFF988 0.50 -0.2 221,371 - GFF988 0.50 -1.1 221,371 - GFF988 0.50 -2.1 221,408 - GFF988 0.62 -1.0 221,408 - GFF988 0.62 -0.9 221,408 - GFF988 0.62 -0.9 221,507 - -2.1 221,521 + -1.1 221,522 - +0.4 221,522 - +0.3 221,543 + -1.4 221,544 - -0.3 221,544 - -0.1 221,544 - -0.1 221,556 + +1.0 221,556 + +0.1 221,557 - -0.7 221,578 - +0.9 221,594 + GFF989 0.14 -1.2 221,594 + GFF989 0.14 -1.6 221,594 + GFF989 0.14 -0.4 221,595 - GFF989 0.14 -1.6 221,595 - GFF989 0.14 -0.1 221,599 - GFF989 0.15 +0.5 221,599 - GFF989 0.15 -2.4 221,652 + GFF989 0.34 -1.7 221,653 - GFF989 0.34 -1.3 221,653 - GFF989 0.34 -0.4 221,728 + GFF989 0.61 -2.6 221,728 + GFF989 0.61 +0.5 221,790 - GFF989 0.82 -0.1 221,794 + GFF989 0.84 +0.5 221,794 + GFF989 0.84 -1.3 221,795 - GFF989 0.84 -1.1 221,795 - GFF989 0.84 -1.6 221,796 + GFF989 0.85 -0.8 221,796 + GFF989 0.85 -0.5 221,817 + +0.1 221,818 - -0.7 221,818 - +0.2 221,865 - -1.6 221,898 + -0.7 221,898 + -0.1 221,899 - -0.1 221,956 - -0.7 221,956 - -0.1 221,960 + -0.4 221,961 - +0.1 221,961 - -0.7 221,961 - -1.1 221,995 - +0.6 222,003 + -0.0 222,004 - -0.5 222,013 + -0.9 222,014 - -0.0 222,035 - -0.4 222,059 + -2.3 222,059 + -1.3 222,059 + -0.1 222,059 + -0.9 222,059 + -0.9 222,059 + -0.9 222,060 - -0.8 222,065 + -1.1 222,065 + +1.6 222,066 - -0.4 222,066 - -2.1 222,103 + -1.4 222,103 + -0.1 222,103 + -1.4 222,103 + -0.9 222,103 + -0.1 222,104 - -1.1 222,104 - -0.1 222,104 - +0.1 222,104 - +0.1 222,104 - -1.7 222,142 + +0.7 222,189 + -1.1 222,190 - -1.7 222,190 - -1.9 222,198 + -1.1 222,198 + -1.4 222,198 + -0.9 222,198 + -0.1 222,198 + -1.0 222,198 + +0.5 222,199 - -0.1 222,199 - -0.3 222,238 + +0.2 222,239 - -0.2 222,240 + -0.2 222,240 + +0.3 222,241 - -1.7 222,241 - -1.4 222,255 + +0.0 222,256 - -1.8 222,283 + -0.1 222,461 + GFF990 0.11 +0.1 222,483 - GFF990 0.13 -0.1 222,583 + GFF990 0.19 +0.4 222,621 - GFF990 0.21 -1.1 222,625 + GFF990 0.22 -1.1 222,625 + GFF990 0.22 -0.4 222,651 + GFF990 0.23 -0.2 222,651 + GFF990 0.23 +0.6 222,652 - GFF990 0.23 -0.1 222,652 - GFF990 0.23 -1.4 222,706 + GFF990 0.27 -0.3 222,706 + GFF990 0.27 +0.7 222,706 + GFF990 0.27 -1.6 222,706 + GFF990 0.27 -1.4 222,706 + GFF990 0.27 -0.3 222,707 - GFF990 0.27 +0.6 222,707 - GFF990 0.27 -1.4 222,707 - GFF990 0.27 +0.9 222,707 - GFF990 0.27 +1.4 222,707 - GFF990 0.27 -1.9 222,708 + GFF990 0.27 +0.1 222,709 - GFF990 0.27 +1.2 222,722 + GFF990 0.28 -0.5 222,752 + GFF990 0.30 -0.1 222,752 + GFF990 0.30 +0.3 222,753 - GFF990 0.30 +0.5 222,827 + GFF990 0.34 -0.1 222,827 + GFF990 0.34 +0.1 222,827 + GFF990 0.34 -1.0 222,828 - GFF990 0.34 -0.1 222,828 - GFF990 0.34 +0.4
Or see this region's nucleotide sequence