Strain Fitness in Methylophilus sp. DMC18 around GFF983

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF982 and GFF983 are separated by 9 nucleotidesGFF983 and GFF984 are separated by 360 nucleotides GFF982 - hypothetical protein, at 213,399 to 214,400 GFF982 GFF983 - hypothetical protein, at 214,410 to 215,066 GFF983 GFF984 - Peptide chain release factor RF2, at 215,427 to 216,341 GFF984 Position (kb) 214 215 216Strain fitness (log2 ratio) -3 -2 -1 0 1at 213.773 kb on - strand, within GFF982at 213.850 kb on - strand, within GFF982at 213.850 kb on - strand, within GFF982at 213.863 kb on + strand, within GFF982at 213.878 kb on + strand, within GFF982at 213.879 kb on - strand, within GFF982at 213.897 kb on - strand, within GFF982at 213.900 kb on - strand, within GFF982at 213.981 kb on - strand, within GFF982at 213.981 kb on - strand, within GFF982at 214.007 kb on + strand, within GFF982at 214.112 kb on + strand, within GFF982at 214.112 kb on + strand, within GFF982at 214.113 kb on - strand, within GFF982at 214.160 kb on + strand, within GFF982at 214.161 kb on - strand, within GFF982at 214.161 kb on - strand, within GFF982at 214.161 kb on - strand, within GFF982at 214.161 kb on - strand, within GFF982at 214.161 kb on - strand, within GFF982at 214.163 kb on + strand, within GFF982at 214.164 kb on - strand, within GFF982at 214.182 kb on + strand, within GFF982at 214.182 kb on + strand, within GFF982at 214.182 kb on + strand, within GFF982at 214.182 kb on + strand, within GFF982at 214.182 kb on + strand, within GFF982at 214.182 kb on + strand, within GFF982at 214.182 kb on + strand, within GFF982at 214.183 kb on - strand, within GFF982at 214.183 kb on - strand, within GFF982at 214.183 kb on - strand, within GFF982at 214.183 kb on - strand, within GFF982at 214.183 kb on - strand, within GFF982at 214.183 kb on - strand, within GFF982at 214.183 kb on - strand, within GFF982at 214.183 kb on - strand, within GFF982at 214.183 kb on - strand, within GFF982at 214.292 kb on + strand, within GFF982at 214.340 kb on + strandat 214.340 kb on + strandat 214.412 kb on - strandat 214.423 kb on - strandat 214.423 kb on - strandat 214.489 kb on + strand, within GFF983at 214.646 kb on + strand, within GFF983at 214.646 kb on + strand, within GFF983at 214.646 kb on + strand, within GFF983at 214.646 kb on + strand, within GFF983at 214.646 kb on + strand, within GFF983at 214.646 kb on + strand, within GFF983at 214.646 kb on + strand, within GFF983at 214.647 kb on - strand, within GFF983at 214.647 kb on - strand, within GFF983at 214.647 kb on - strand, within GFF983at 214.647 kb on - strand, within GFF983at 214.647 kb on - strand, within GFF983at 214.647 kb on - strand, within GFF983at 214.647 kb on - strand, within GFF983at 214.647 kb on - strand, within GFF983at 214.647 kb on - strand, within GFF983at 214.647 kb on - strand, within GFF983at 214.647 kb on - strand, within GFF983at 214.663 kb on - strand, within GFF983at 214.681 kb on - strand, within GFF983at 214.683 kb on + strand, within GFF983at 214.684 kb on - strand, within GFF983at 214.684 kb on - strand, within GFF983at 214.732 kb on + strand, within GFF983at 214.733 kb on - strand, within GFF983at 214.733 kb on - strand, within GFF983at 214.782 kb on + strand, within GFF983at 214.783 kb on - strand, within GFF983at 214.783 kb on - strand, within GFF983at 214.826 kb on + strand, within GFF983at 214.826 kb on + strand, within GFF983at 214.830 kb on - strand, within GFF983at 214.830 kb on - strand, within GFF983at 214.838 kb on + strand, within GFF983at 214.838 kb on + strand, within GFF983at 214.839 kb on - strand, within GFF983at 214.867 kb on + strand, within GFF983at 214.867 kb on + strand, within GFF983at 214.868 kb on - strand, within GFF983at 215.008 kb on + strandat 215.008 kb on + strandat 215.008 kb on + strandat 215.008 kb on + strandat 215.008 kb on + strandat 215.008 kb on + strandat 215.009 kb on - strandat 215.009 kb on - strandat 215.009 kb on - strandat 215.013 kb on - strandat 215.013 kb on - strandat 215.080 kb on + strandat 215.103 kb on + strandat 215.104 kb on - strandat 215.104 kb on - strandat 215.167 kb on + strandat 215.168 kb on - strandat 215.168 kb on - strandat 215.172 kb on + strandat 215.172 kb on + strandat 215.173 kb on - strandat 215.191 kb on + strandat 215.191 kb on + strandat 215.192 kb on - strandat 215.192 kb on - strandat 215.201 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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213,773 - GFF982 0.37 -2.1
213,850 - GFF982 0.45 -0.4
213,850 - GFF982 0.45 -1.7
213,863 + GFF982 0.46 -1.0
213,878 + GFF982 0.48 -2.3
213,879 - GFF982 0.48 -1.1
213,897 - GFF982 0.50 -0.7
213,900 - GFF982 0.50 +0.9
213,981 - GFF982 0.58 -1.3
213,981 - GFF982 0.58 -0.1
214,007 + GFF982 0.61 -0.4
214,112 + GFF982 0.71 -0.5
214,112 + GFF982 0.71 -1.1
214,113 - GFF982 0.71 -0.3
214,160 + GFF982 0.76 -1.1
214,161 - GFF982 0.76 -0.4
214,161 - GFF982 0.76 -0.9
214,161 - GFF982 0.76 -1.9
214,161 - GFF982 0.76 -1.1
214,161 - GFF982 0.76 +0.5
214,163 + GFF982 0.76 -1.1
214,164 - GFF982 0.76 -1.1
214,182 + GFF982 0.78 -1.1
214,182 + GFF982 0.78 -0.9
214,182 + GFF982 0.78 -1.9
214,182 + GFF982 0.78 -0.8
214,182 + GFF982 0.78 -0.7
214,182 + GFF982 0.78 -3.1
214,182 + GFF982 0.78 -0.6
214,183 - GFF982 0.78 -1.1
214,183 - GFF982 0.78 -0.4
214,183 - GFF982 0.78 -0.1
214,183 - GFF982 0.78 -0.1
214,183 - GFF982 0.78 -0.9
214,183 - GFF982 0.78 -0.9
214,183 - GFF982 0.78 +0.1
214,183 - GFF982 0.78 -1.1
214,183 - GFF982 0.78 +0.5
214,292 + GFF982 0.89 -1.1
214,340 + -1.3
214,340 + -2.1
214,412 - -2.1
214,423 - -1.0
214,423 - -0.6
214,489 + GFF983 0.12 -0.3
214,646 + GFF983 0.36 -2.1
214,646 + GFF983 0.36 +0.5
214,646 + GFF983 0.36 -2.1
214,646 + GFF983 0.36 -0.1
214,646 + GFF983 0.36 -1.7
214,646 + GFF983 0.36 -1.1
214,646 + GFF983 0.36 -1.4
214,647 - GFF983 0.36 -1.0
214,647 - GFF983 0.36 -1.9
214,647 - GFF983 0.36 -1.7
214,647 - GFF983 0.36 +0.1
214,647 - GFF983 0.36 -2.4
214,647 - GFF983 0.36 -1.8
214,647 - GFF983 0.36 -1.6
214,647 - GFF983 0.36 -0.4
214,647 - GFF983 0.36 -1.4
214,647 - GFF983 0.36 -1.1
214,647 - GFF983 0.36 -1.3
214,663 - GFF983 0.39 -1.0
214,681 - GFF983 0.41 -0.3
214,683 + GFF983 0.42 -1.1
214,684 - GFF983 0.42 -1.2
214,684 - GFF983 0.42 -1.1
214,732 + GFF983 0.49 -0.7
214,733 - GFF983 0.49 +0.5
214,733 - GFF983 0.49 -0.3
214,782 + GFF983 0.57 -1.2
214,783 - GFF983 0.57 -0.8
214,783 - GFF983 0.57 -0.9
214,826 + GFF983 0.63 -1.4
214,826 + GFF983 0.63 -0.7
214,830 - GFF983 0.64 -0.2
214,830 - GFF983 0.64 -1.7
214,838 + GFF983 0.65 -2.1
214,838 + GFF983 0.65 +0.6
214,839 - GFF983 0.65 -1.1
214,867 + GFF983 0.70 -1.6
214,867 + GFF983 0.70 +1.1
214,868 - GFF983 0.70 -0.4
215,008 + -1.3
215,008 + -0.9
215,008 + -2.7
215,008 + -0.5
215,008 + -1.4
215,008 + -1.8
215,009 - -2.1
215,009 - -1.3
215,009 - +0.1
215,013 - -1.3
215,013 - -1.4
215,080 + -1.4
215,103 + -0.9
215,104 - -0.1
215,104 - -1.0
215,167 + +0.4
215,168 - -1.4
215,168 - -1.0
215,172 + -0.5
215,172 + -2.3
215,173 - -0.1
215,191 + -0.9
215,191 + -1.1
215,192 - -1.1
215,192 - -1.4
215,201 - -1.1

Or see this region's nucleotide sequence