Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF88 and GFF89 are separated by 9 nucleotides GFF89 and GFF90 are separated by 12 nucleotides GFF90 and GFF91 are separated by 293 nucleotides
GFF88 - Response regulator UvrY, at 99,303 to 99,935
GFF88
GFF89 - hypothetical protein, at 99,945 to 100,448
GFF89
GFF90 - hypothetical protein, at 100,461 to 100,877
GFF90
GFF91 - hypothetical protein, at 101,171 to 102,601
GFF91
Position (kb) 100
101 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 99.502 kb on - strand, within GFF88 at 99.565 kb on + strand, within GFF88 at 99.634 kb on + strand, within GFF88 at 99.635 kb on - strand, within GFF88 at 99.635 kb on - strand, within GFF88 at 99.635 kb on - strand, within GFF88 at 99.771 kb on + strand, within GFF88 at 99.771 kb on + strand, within GFF88 at 99.772 kb on - strand, within GFF88 at 99.772 kb on - strand, within GFF88 at 99.772 kb on - strand, within GFF88 at 99.773 kb on + strand, within GFF88 at 99.781 kb on - strand, within GFF88 at 99.981 kb on - strand at 100.047 kb on + strand, within GFF89 at 100.048 kb on - strand, within GFF89 at 100.346 kb on - strand, within GFF89 at 100.380 kb on - strand, within GFF89 at 100.380 kb on - strand, within GFF89 at 100.408 kb on - strand at 100.408 kb on - strand at 100.440 kb on + strand at 100.441 kb on - strand at 100.448 kb on + strand at 100.448 kb on + strand at 100.459 kb on - strand at 100.463 kb on - strand at 100.524 kb on + strand, within GFF90 at 100.525 kb on - strand, within GFF90 at 100.583 kb on - strand, within GFF90 at 100.583 kb on - strand, within GFF90 at 100.583 kb on - strand, within GFF90 at 100.587 kb on - strand, within GFF90 at 100.587 kb on - strand, within GFF90 at 100.587 kb on - strand, within GFF90 at 100.689 kb on - strand, within GFF90 at 100.844 kb on + strand at 100.845 kb on - strand at 100.845 kb on - strand at 100.902 kb on - strand at 100.902 kb on - strand at 100.930 kb on + strand at 100.931 kb on - strand at 100.931 kb on - strand at 100.931 kb on - strand at 100.931 kb on - strand at 100.932 kb on + strand at 100.933 kb on - strand at 100.933 kb on - strand at 100.933 kb on - strand at 100.933 kb on - strand at 100.942 kb on - strand at 100.970 kb on + strand at 100.971 kb on - strand at 101.035 kb on + strand at 101.035 kb on + strand at 101.035 kb on + strand at 101.036 kb on - strand at 101.036 kb on - strand at 101.036 kb on - strand at 101.097 kb on + strand at 101.097 kb on + strand at 101.102 kb on + strand at 101.102 kb on + strand at 101.102 kb on + strand at 101.102 kb on + strand at 101.102 kb on + strand at 101.102 kb on + strand at 101.103 kb on - strand at 101.103 kb on - strand at 101.103 kb on - strand at 101.121 kb on + strand at 101.121 kb on + strand at 101.121 kb on + strand at 101.155 kb on + strand at 101.156 kb on - strand at 101.230 kb on + strand at 101.230 kb on + strand at 101.231 kb on - strand at 101.245 kb on + strand at 101.245 kb on + strand at 101.245 kb on + strand at 101.245 kb on + strand at 101.246 kb on - strand at 101.246 kb on - strand at 101.271 kb on + strand at 101.447 kb on + strand, within GFF91 at 101.506 kb on + strand, within GFF91 at 101.521 kb on + strand, within GFF91 at 101.522 kb on - strand, within GFF91 at 101.547 kb on + strand, within GFF91 at 101.547 kb on + strand, within GFF91 at 101.764 kb on + strand, within GFF91 at 101.764 kb on + strand, within GFF91 at 101.764 kb on + strand, within GFF91 at 101.764 kb on + strand, within GFF91 at 101.764 kb on + strand, within GFF91 at 101.764 kb on + strand, within GFF91 at 101.767 kb on + strand, within GFF91 at 101.795 kb on - strand, within GFF91
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 99,502 - GFF88 0.31 -1.6 99,565 + GFF88 0.41 -1.4 99,634 + GFF88 0.52 -0.6 99,635 - GFF88 0.52 -0.0 99,635 - GFF88 0.52 -0.4 99,635 - GFF88 0.52 -0.5 99,771 + GFF88 0.74 -0.0 99,771 + GFF88 0.74 -1.4 99,772 - GFF88 0.74 -0.0 99,772 - GFF88 0.74 -0.5 99,772 - GFF88 0.74 -0.0 99,773 + GFF88 0.74 -1.4 99,781 - GFF88 0.76 -1.4 99,981 - +0.5 100,047 + GFF89 0.20 -1.6 100,048 - GFF89 0.20 -2.8 100,346 - GFF89 0.80 +0.2 100,380 - GFF89 0.86 -1.0 100,380 - GFF89 0.86 +0.5 100,408 - -0.6 100,408 - -2.2 100,440 + -0.4 100,441 - -0.4 100,448 + -1.6 100,448 + -1.0 100,459 - -0.4 100,463 - +0.4 100,524 + GFF90 0.15 -1.4 100,525 - GFF90 0.15 +0.4 100,583 - GFF90 0.29 -0.6 100,583 - GFF90 0.29 +0.2 100,583 - GFF90 0.29 -2.0 100,587 - GFF90 0.30 -0.0 100,587 - GFF90 0.30 -1.6 100,587 - GFF90 0.30 -1.6 100,689 - GFF90 0.55 -2.0 100,844 + -1.4 100,845 - -0.2 100,845 - -1.4 100,902 - -0.8 100,902 - +0.6 100,930 + -1.4 100,931 - -0.5 100,931 - -0.6 100,931 - -1.2 100,931 - -2.0 100,932 + +0.1 100,933 - +0.4 100,933 - -1.0 100,933 - -0.0 100,933 - -1.2 100,942 - -0.8 100,970 + -0.0 100,971 - -1.0 101,035 + -1.6 101,035 + -1.4 101,035 + -0.5 101,036 - +1.0 101,036 - -0.8 101,036 - +1.0 101,097 + -0.0 101,097 + -0.8 101,102 + -1.0 101,102 + -1.6 101,102 + -0.9 101,102 + -1.2 101,102 + -0.6 101,102 + -0.2 101,103 - +0.6 101,103 - -0.0 101,103 - -1.0 101,121 + -1.0 101,121 + -0.5 101,121 + -0.4 101,155 + -0.0 101,156 - -0.6 101,230 + -0.7 101,230 + -0.2 101,231 - -0.8 101,245 + -0.0 101,245 + -0.0 101,245 + +0.2 101,245 + -1.4 101,246 - -1.0 101,246 - +0.2 101,271 + -0.2 101,447 + GFF91 0.19 +0.7 101,506 + GFF91 0.23 +0.4 101,521 + GFF91 0.24 -1.3 101,522 - GFF91 0.25 -0.3 101,547 + GFF91 0.26 -0.8 101,547 + GFF91 0.26 -1.0 101,764 + GFF91 0.41 -2.2 101,764 + GFF91 0.41 -1.4 101,764 + GFF91 0.41 -0.2 101,764 + GFF91 0.41 +0.5 101,764 + GFF91 0.41 -0.7 101,764 + GFF91 0.41 -1.0 101,767 + GFF91 0.42 +0.2 101,795 - GFF91 0.44 -0.6
Or see this region's nucleotide sequence