Strain Fitness in Methylophilus sp. DMC18 around GFF891

Experiment: D-Glucose and casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose and casaminos (C)
127,235	+		GFF890	0.48	-0.7
127,236	-		GFF890	0.48	-0.4
127,236	-		GFF890	0.48	+0.6
127,236	-		GFF890	0.48	-0.6
127,236	-		GFF890	0.48	+0.1
127,236	-		GFF890	0.48	+1.0
127,272	+		GFF890	0.52	-1.4
127,272	+		GFF890	0.52	-0.7
127,272	+		GFF890	0.52	-0.8
127,272	+		GFF890	0.52	-0.1
127,272	+		GFF890	0.52	+0.2
127,273	-		GFF890	0.52	-1.9
127,274	+		GFF890	0.52	+0.1
127,278	-		GFF890	0.53	+0.2
127,278	-		GFF890	0.53	-1.2
127,295	+		GFF890	0.55	+0.9
127,295	+		GFF890	0.55	-1.1
127,295	+		GFF890	0.55	-0.4
127,323	+		GFF890	0.58	-2.0
127,323	+		GFF890	0.58	+0.1
127,323	+		GFF890	0.58	-1.4
127,323	+		GFF890	0.58	-0.7
127,324	-		GFF890	0.58	-1.2
127,324	-		GFF890	0.58	-0.1
127,324	-		GFF890	0.58	+0.5
127,324	-		GFF890	0.58	-0.7
127,358	+		GFF890	0.62	+0.7
127,403	+		GFF890	0.67	-0.7
127,404	-		GFF890	0.67	-1.1
127,404	-		GFF890	0.67	-1.1
127,404	-		GFF890	0.67	-0.9
127,448	+		GFF890	0.72	-0.1
127,448	+		GFF890	0.72	-0.4
127,448	+		GFF890	0.72	-2.1
127,448	+		GFF890	0.72	-1.6
127,449	-		GFF890	0.72	-0.9
127,509	+		GFF890	0.79	-0.8
127,510	-		GFF890	0.79	-0.4
127,510	-		GFF890	0.79	-0.4
127,513	+		GFF890	0.80	-1.1
127,513	+		GFF890	0.80	+1.2
127,513	+		GFF890	0.80	-1.1
127,513	+		GFF890	0.80	-1.1
127,514	-		GFF890	0.80	+0.4
127,514	-		GFF890	0.80	+1.1
127,526	+		GFF890	0.81	-0.3
127,526	+		GFF890	0.81	-0.5
127,526	+		GFF890	0.81	-0.4
127,527	-		GFF890	0.81	-2.0
127,527	-		GFF890	0.81	-0.1
127,529	+		GFF890	0.82	+0.1
127,537	+		GFF890	0.82	-0.3
127,537	+		GFF890	0.82	-1.1
127,537	+		GFF890	0.82	-0.7
127,537	+		GFF890	0.82	-2.1
127,538	-		GFF890	0.83	+0.6
127,538	-		GFF890	0.83	-0.6
127,538	-		GFF890	0.83	-0.1
127,538	-		GFF890	0.83	-0.9
127,538	-		GFF890	0.83	-0.1
127,583	+		GFF890	0.88	+0.5
127,613	+				-0.5
127,613	+				+0.5
127,613	+				+0.2
127,622	+				-1.2
127,622	+				-1.7
127,633	+				-1.2
127,634	-				-1.4
127,634	-				+0.1
127,715	+				-0.1
127,715	+				-0.6
127,715	+				-0.9
127,715	+				-0.1
127,716	-				-1.2
127,716	-				+0.1
127,716	-				+0.0
127,716	-				-0.3
127,716	-				-1.7
127,716	-				+0.2
127,721	+				+0.0
127,721	+				-2.1
127,721	+				-0.3
127,722	-				-1.8
127,722	-				-1.3
127,725	+				-0.3
127,725	+				-0.9
127,726	-				-0.5
127,734	+				+0.1
127,735	-				-1.0
127,763	-				-1.1
127,766	-				-0.9
127,774	+				-2.7
127,805	+				-1.9
127,805	+				-0.1
127,805	+				-0.1
127,806	-				+0.6
127,806	-				-1.7
127,806	-				-1.4
127,806	-				+0.6
127,806	-				-0.1
127,806	-				-0.3
127,830	-				+0.6
127,836	+				-0.7
127,843	+				+0.5
127,881	+				-1.9
127,881	+				-0.7
127,882	-				-0.9
127,912	+				-0.9
127,913	-				-0.4
127,917	-				-0.5
127,939	+				-0.7
127,940	-				-2.4
127,940	-				-0.4
127,994	-				+0.0
128,020	+				-1.0
128,020	+				-1.4
128,020	+				-0.4
128,020	+				-0.7
128,021	-				-0.9
128,021	-				-1.1
128,032	+				-1.1
128,033	-				-1.1
128,033	-				-0.1
128,047	+				-0.1
128,047	+				-0.7
128,047	+				-0.9
128,047	+				-1.0
128,047	+				-1.4
128,047	+				-1.1
128,048	-				-1.1
128,048	-				-2.8
128,054	+				-1.1
128,054	+				-1.2
128,054	+				-0.1
128,055	-				-0.1
128,055	-				-1.1
128,063	+				-1.1
128,063	+				-0.7
128,064	-				+0.1
128,067	+				+0.1
128,067	+				-0.2
128,067	+				-0.7
128,068	-				-0.6
128,068	-				-0.9
128,068	-				-1.0
128,076	-				-0.7
128,076	-				-0.4
128,114	+				-0.7
128,114	+				-0.4
128,115	-				-3.0
128,120	-				-0.4
128,120	-				+0.1
128,131	-				-0.1
128,139	+				-0.4
128,154	-				-1.4
128,244	+				+0.3
128,619	+		GFF891	0.39	-1.1
128,683	+		GFF891	0.45	-0.1
128,683	+		GFF891	0.45	+0.1
128,833	+		GFF891	0.59	-1.4
128,847	+		GFF891	0.60	-1.1
129,098	+		GFF891	0.82	-1.1
129,098	+		GFF891	0.82	-1.7
129,098	+		GFF891	0.82	-0.1
129,098	+		GFF891	0.82	-2.1
129,114	+		GFF891	0.84	-1.2
129,126	+		GFF891	0.85	-1.7
129,135	+		GFF891	0.86	-0.4
129,192	+				-0.9
129,193	-				-1.4
129,193	-				+0.1
129,240	+				-0.8
129,241	-				-0.0
129,247	-				-0.1
129,290	-				-1.7
129,401	+				-0.4
129,402	-				+0.9
129,404	+				-0.5
129,404	+				-1.4
129,404	+				-0.5
129,459	+		GFF892	0.15	-1.4
129,459	+		GFF892	0.15	-0.1
129,497	+		GFF892	0.19	-1.2
129,498	-		GFF892	0.20	-1.1
129,498	-		GFF892	0.20	-0.4
129,521	+		GFF892	0.22	+0.1
129,572	+		GFF892	0.28	+0.1
129,573	-		GFF892	0.28	-1.9
129,853	+		GFF892	0.60	-0.1
129,853	+		GFF892	0.60	-0.6
129,854	-		GFF892	0.60	+0.4
129,920	+		GFF892	0.68	-1.1
129,920	+		GFF892	0.68	-0.7
129,958	+		GFF892	0.72	-1.8
129,958	+		GFF892	0.72	-0.3
129,958	+		GFF892	0.72	-0.1
129,959	-		GFF892	0.72	-0.3
129,959	-		GFF892	0.72	-0.7
129,959	-		GFF892	0.72	-0.1
129,959	-		GFF892	0.72	-0.4
129,959	-		GFF892	0.72	-0.9
130,016	+		GFF892	0.79	-0.3
130,016	+		GFF892	0.79	-1.1
130,017	-		GFF892	0.79	-1.1
130,042	-		GFF892	0.82	+0.0
130,042	-		GFF892	0.82	-0.5
130,042	-		GFF892	0.82	+0.2
130,092	+		GFF892	0.88	-0.8
130,092	+		GFF892	0.88	-0.9
130,092	+		GFF892	0.88	-0.8
130,092	+		GFF892	0.88	-0.9
130,092	+		GFF892	0.88	-0.1
130,093	-		GFF892	0.88	-0.4
130,093	-		GFF892	0.88	-0.1
130,093	-		GFF892	0.88	-0.5
130,093	-		GFF892	0.88	-0.1
130,108	+		GFF892	0.89	+0.1
130,108	+		GFF892	0.89	-1.2
130,108	+		GFF892	0.89	-0.4
130,108	+		GFF892	0.89	-1.1
130,108	+		GFF892	0.89	-1.8
130,108	+		GFF892	0.89	-0.7
130,109	-		GFF892	0.90	-1.4
130,109	-		GFF892	0.90	+0.0
130,109	-		GFF892	0.90	-0.2
130,109	-		GFF892	0.90	-0.6
130,109	-		GFF892	0.90	-1.5
130,109	-		GFF892	0.90	-1.3
130,109	-		GFF892	0.90	-0.3
130,109	-		GFF892	0.90	-0.7
130,109	-		GFF892	0.90	-0.6
130,109	-		GFF892	0.90	-0.5
130,109	-		GFF892	0.90	-0.9
130,109	-		GFF892	0.90	-1.2
130,110	+		GFF892	0.90	-1.1
130,110	+		GFF892	0.90	-0.1
130,110	+		GFF892	0.90	-0.5
130,110	+		GFF892	0.90	-0.5
130,110	+		GFF892	0.90	+0.0
130,110	+		GFF892	0.90	-0.5
130,111	-		GFF892	0.90	-1.1
130,111	-		GFF892	0.90	+0.7
130,111	-		GFF892	0.90	+0.1
130,111	-		GFF892	0.90	-0.6
130,111	-		GFF892	0.90	-1.4
130,111	-		GFF892	0.90	-0.7
130,111	-		GFF892	0.90	+0.7
130,111	-		GFF892	0.90	+0.5
130,197	+				-0.4
130,233	+				+0.1
130,234	-				-0.5
130,234	-				-0.5
130,234	-				-0.1
130,243	+				-0.5
130,243	+				-2.4
130,243	+				-0.1
130,244	-				-0.2
130,244	-				-1.2
130,244	-				+0.5
130,258	+				-1.1
130,259	-				+0.5
130,275	-				-0.6