Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF859 and GFF860 are separated by 165 nucleotides GFF860 and GFF861 are separated by 40 nucleotides GFF861 and GFF862 are separated by 71 nucleotides GFF862 and GFF863 overlap by 1 nucleotides
GFF859 - hypothetical protein, at 95,510 to 96,367
GFF859
GFF860 - dTTP/UTP pyrophosphatase, at 96,533 to 97,099
GFF860
GFF861 - Ribonuclease G, at 97,140 to 98,612
GFF861
GFF862 - hypothetical protein, at 98,684 to 99,232
GFF862
GFF863 - Pyrroline-5-carboxylate reductase, at 99,232 to 100,062
GFF863
Position (kb) 97
98
99 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 96.145 kb on + strand, within GFF859 at 96.145 kb on + strand, within GFF859 at 96.146 kb on - strand, within GFF859 at 96.148 kb on + strand, within GFF859 at 96.148 kb on + strand, within GFF859 at 96.149 kb on - strand, within GFF859 at 96.149 kb on - strand, within GFF859 at 96.149 kb on - strand, within GFF859 at 96.149 kb on - strand, within GFF859 at 96.152 kb on + strand, within GFF859 at 96.152 kb on + strand, within GFF859 at 96.153 kb on - strand, within GFF859 at 96.176 kb on + strand, within GFF859 at 96.176 kb on + strand, within GFF859 at 96.176 kb on + strand, within GFF859 at 96.177 kb on - strand, within GFF859 at 96.178 kb on + strand, within GFF859 at 96.178 kb on + strand, within GFF859 at 96.179 kb on - strand, within GFF859 at 96.179 kb on - strand, within GFF859 at 96.227 kb on + strand, within GFF859 at 96.228 kb on - strand, within GFF859 at 96.322 kb on + strand at 96.322 kb on + strand at 96.322 kb on + strand at 96.322 kb on + strand at 96.322 kb on + strand at 96.323 kb on - strand at 96.323 kb on - strand at 96.344 kb on + strand at 96.344 kb on + strand at 96.345 kb on - strand at 96.345 kb on - strand at 96.345 kb on - strand at 96.345 kb on - strand at 96.397 kb on + strand at 96.397 kb on + strand at 96.397 kb on + strand at 96.397 kb on + strand at 96.398 kb on - strand at 96.398 kb on - strand at 96.398 kb on - strand at 96.398 kb on - strand at 96.402 kb on + strand at 96.402 kb on + strand at 96.402 kb on + strand at 96.402 kb on + strand at 96.402 kb on + strand at 96.403 kb on - strand at 96.403 kb on - strand at 96.403 kb on - strand at 96.445 kb on - strand at 96.460 kb on + strand at 96.460 kb on + strand at 96.461 kb on - strand at 96.467 kb on + strand at 96.467 kb on + strand at 96.468 kb on - strand at 96.470 kb on + strand at 96.470 kb on + strand at 96.478 kb on + strand at 96.479 kb on - strand at 96.479 kb on - strand at 96.481 kb on + strand at 96.482 kb on - strand at 96.518 kb on + strand at 96.525 kb on - strand at 96.525 kb on - strand at 96.525 kb on - strand at 96.550 kb on + strand at 96.551 kb on - strand at 96.585 kb on + strand at 96.603 kb on + strand, within GFF860 at 96.603 kb on + strand, within GFF860 at 96.603 kb on + strand, within GFF860 at 96.603 kb on + strand, within GFF860 at 96.603 kb on + strand, within GFF860 at 96.603 kb on + strand, within GFF860 at 96.603 kb on + strand, within GFF860 at 96.603 kb on + strand, within GFF860 at 96.604 kb on - strand, within GFF860 at 96.604 kb on - strand, within GFF860 at 96.629 kb on - strand, within GFF860 at 96.668 kb on + strand, within GFF860 at 96.668 kb on + strand, within GFF860 at 96.669 kb on - strand, within GFF860 at 96.669 kb on - strand, within GFF860 at 96.751 kb on + strand, within GFF860 at 96.752 kb on - strand, within GFF860 at 96.828 kb on + strand, within GFF860 at 96.881 kb on - strand, within GFF860 at 96.916 kb on + strand, within GFF860 at 96.916 kb on + strand, within GFF860 at 96.916 kb on + strand, within GFF860 at 96.916 kb on + strand, within GFF860 at 96.916 kb on + strand, within GFF860 at 96.917 kb on - strand, within GFF860 at 96.917 kb on - strand, within GFF860 at 96.927 kb on + strand, within GFF860 at 96.942 kb on + strand, within GFF860 at 96.950 kb on + strand, within GFF860 at 96.950 kb on + strand, within GFF860 at 96.950 kb on + strand, within GFF860 at 96.950 kb on + strand, within GFF860 at 96.950 kb on + strand, within GFF860 at 96.950 kb on + strand, within GFF860 at 96.950 kb on + strand, within GFF860 at 96.950 kb on + strand, within GFF860 at 96.950 kb on + strand, within GFF860 at 96.950 kb on + strand, within GFF860 at 96.951 kb on - strand, within GFF860 at 96.951 kb on - strand, within GFF860 at 96.951 kb on - strand, within GFF860 at 96.951 kb on - strand, within GFF860 at 96.951 kb on - strand, within GFF860 at 96.951 kb on - strand, within GFF860 at 97.040 kb on + strand, within GFF860 at 97.040 kb on + strand, within GFF860 at 97.040 kb on + strand, within GFF860 at 97.041 kb on - strand, within GFF860 at 97.041 kb on - strand, within GFF860 at 97.041 kb on - strand, within GFF860 at 97.041 kb on - strand, within GFF860 at 97.042 kb on + strand, within GFF860 at 97.042 kb on + strand, within GFF860 at 97.097 kb on + strand at 97.097 kb on + strand at 97.097 kb on + strand at 97.097 kb on + strand at 97.132 kb on + strand at 97.139 kb on + strand at 97.140 kb on - strand at 97.140 kb on - strand at 97.140 kb on - strand at 97.159 kb on + strand at 97.159 kb on + strand at 97.159 kb on + strand at 97.166 kb on + strand at 97.266 kb on - strand at 97.266 kb on - strand at 97.270 kb on - strand at 97.457 kb on + strand, within GFF861 at 97.457 kb on + strand, within GFF861 at 97.458 kb on - strand, within GFF861 at 97.458 kb on - strand, within GFF861 at 97.527 kb on + strand, within GFF861 at 97.527 kb on + strand, within GFF861 at 97.527 kb on + strand, within GFF861 at 97.527 kb on + strand, within GFF861 at 97.527 kb on + strand, within GFF861 at 97.527 kb on + strand, within GFF861 at 97.527 kb on + strand, within GFF861 at 97.547 kb on + strand, within GFF861 at 97.641 kb on + strand, within GFF861 at 97.641 kb on + strand, within GFF861 at 97.642 kb on - strand, within GFF861 at 97.642 kb on - strand, within GFF861 at 97.642 kb on - strand, within GFF861 at 97.643 kb on + strand, within GFF861 at 97.643 kb on + strand, within GFF861 at 97.643 kb on + strand, within GFF861 at 97.643 kb on + strand, within GFF861 at 97.643 kb on + strand, within GFF861 at 97.644 kb on - strand, within GFF861 at 97.644 kb on - strand, within GFF861 at 97.644 kb on - strand, within GFF861 at 97.701 kb on + strand, within GFF861 at 97.701 kb on + strand, within GFF861 at 97.702 kb on - strand, within GFF861 at 97.702 kb on - strand, within GFF861 at 97.702 kb on - strand, within GFF861 at 97.702 kb on - strand, within GFF861 at 97.702 kb on - strand, within GFF861 at 97.884 kb on + strand, within GFF861 at 97.885 kb on - strand, within GFF861 at 97.947 kb on + strand, within GFF861 at 97.947 kb on + strand, within GFF861 at 98.057 kb on + strand, within GFF861 at 98.078 kb on + strand, within GFF861 at 98.078 kb on + strand, within GFF861 at 98.143 kb on + strand, within GFF861 at 98.143 kb on + strand, within GFF861 at 98.171 kb on + strand, within GFF861 at 98.171 kb on + strand, within GFF861 at 98.172 kb on - strand, within GFF861 at 98.189 kb on + strand, within GFF861 at 98.264 kb on + strand, within GFF861 at 98.265 kb on - strand, within GFF861 at 98.265 kb on - strand, within GFF861 at 98.339 kb on - strand, within GFF861 at 98.339 kb on - strand, within GFF861 at 98.339 kb on - strand, within GFF861 at 98.403 kb on + strand, within GFF861 at 98.492 kb on + strand at 98.492 kb on + strand at 98.493 kb on - strand at 98.493 kb on - strand at 98.578 kb on - strand at 98.598 kb on - strand at 98.645 kb on + strand at 98.645 kb on + strand at 98.645 kb on + strand at 98.646 kb on - strand at 98.646 kb on - strand at 98.676 kb on + strand at 98.676 kb on + strand at 98.685 kb on + strand at 98.686 kb on - strand at 98.686 kb on - strand at 98.795 kb on - strand, within GFF862 at 98.842 kb on - strand, within GFF862 at 98.853 kb on + strand, within GFF862 at 98.854 kb on - strand, within GFF862 at 98.871 kb on - strand, within GFF862 at 98.999 kb on + strand, within GFF862 at 99.000 kb on - strand, within GFF862 at 99.000 kb on - strand, within GFF862 at 99.011 kb on + strand, within GFF862 at 99.012 kb on - strand, within GFF862 at 99.012 kb on - strand, within GFF862 at 99.038 kb on + strand, within GFF862 at 99.038 kb on + strand, within GFF862 at 99.039 kb on - strand, within GFF862 at 99.088 kb on + strand, within GFF862 at 99.167 kb on + strand, within GFF862 at 99.168 kb on - strand, within GFF862 at 99.233 kb on + strand at 99.233 kb on + strand at 99.233 kb on + strand at 99.234 kb on - strand at 99.234 kb on - strand at 99.234 kb on - strand at 99.234 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 96,145 + GFF859 0.74 -1.1 96,145 + GFF859 0.74 -1.3 96,146 - GFF859 0.74 +0.2 96,148 + GFF859 0.74 -1.4 96,148 + GFF859 0.74 -0.1 96,149 - GFF859 0.74 -0.0 96,149 - GFF859 0.74 -0.4 96,149 - GFF859 0.74 -0.7 96,149 - GFF859 0.74 -0.5 96,152 + GFF859 0.75 -0.3 96,152 + GFF859 0.75 +0.5 96,153 - GFF859 0.75 -0.7 96,176 + GFF859 0.78 +0.5 96,176 + GFF859 0.78 -0.5 96,176 + GFF859 0.78 +0.7 96,177 - GFF859 0.78 -0.7 96,178 + GFF859 0.78 -1.1 96,178 + GFF859 0.78 -1.6 96,179 - GFF859 0.78 -1.1 96,179 - GFF859 0.78 -1.1 96,227 + GFF859 0.84 -1.7 96,228 - GFF859 0.84 -0.3 96,322 + -0.8 96,322 + -1.9 96,322 + -0.1 96,322 + -0.1 96,322 + -1.7 96,323 - -1.6 96,323 - -1.0 96,344 + -1.1 96,344 + +0.4 96,345 - -1.4 96,345 - -2.3 96,345 - -0.9 96,345 - -0.4 96,397 + -1.7 96,397 + -1.0 96,397 + -0.9 96,397 + +0.2 96,398 - +0.4 96,398 - -0.5 96,398 - -1.1 96,398 - -0.4 96,402 + -0.3 96,402 + -0.9 96,402 + -1.9 96,402 + +0.5 96,402 + -0.2 96,403 - -1.6 96,403 - +0.9 96,403 - -1.1 96,445 - -1.4 96,460 + -1.1 96,460 + -2.4 96,461 - -1.1 96,467 + -1.2 96,467 + -0.3 96,468 - -1.1 96,470 + -0.8 96,470 + -0.5 96,478 + +0.2 96,479 - +0.6 96,479 - -0.2 96,481 + +0.0 96,482 - -0.4 96,518 + -1.9 96,525 - -1.1 96,525 - -1.1 96,525 - -0.1 96,550 + -0.8 96,551 - -1.4 96,585 + -1.0 96,603 + GFF860 0.12 -0.6 96,603 + GFF860 0.12 -1.5 96,603 + GFF860 0.12 -2.0 96,603 + GFF860 0.12 -1.3 96,603 + GFF860 0.12 -0.7 96,603 + GFF860 0.12 +0.5 96,603 + GFF860 0.12 -2.0 96,603 + GFF860 0.12 -2.1 96,604 - GFF860 0.13 +0.1 96,604 - GFF860 0.13 +0.1 96,629 - GFF860 0.17 -0.3 96,668 + GFF860 0.24 +0.2 96,668 + GFF860 0.24 -0.1 96,669 - GFF860 0.24 -0.3 96,669 - GFF860 0.24 -1.3 96,751 + GFF860 0.38 -0.1 96,752 - GFF860 0.39 -0.4 96,828 + GFF860 0.52 +1.5 96,881 - GFF860 0.61 +0.9 96,916 + GFF860 0.68 -0.5 96,916 + GFF860 0.68 -1.6 96,916 + GFF860 0.68 -1.1 96,916 + GFF860 0.68 +0.0 96,916 + GFF860 0.68 -0.4 96,917 - GFF860 0.68 +0.5 96,917 - GFF860 0.68 -1.1 96,927 + GFF860 0.69 -0.6 96,942 + GFF860 0.72 -0.6 96,950 + GFF860 0.74 -0.7 96,950 + GFF860 0.74 -1.4 96,950 + GFF860 0.74 +0.5 96,950 + GFF860 0.74 -0.3 96,950 + GFF860 0.74 -0.7 96,950 + GFF860 0.74 -0.6 96,950 + GFF860 0.74 +0.5 96,950 + GFF860 0.74 -0.2 96,950 + GFF860 0.74 +0.4 96,950 + GFF860 0.74 +0.5 96,951 - GFF860 0.74 +0.5 96,951 - GFF860 0.74 -2.0 96,951 - GFF860 0.74 -0.2 96,951 - GFF860 0.74 +0.7 96,951 - GFF860 0.74 +0.2 96,951 - GFF860 0.74 -1.3 97,040 + GFF860 0.89 -0.4 97,040 + GFF860 0.89 -0.5 97,040 + GFF860 0.89 -1.4 97,041 - GFF860 0.90 -0.8 97,041 - GFF860 0.90 -1.5 97,041 - GFF860 0.90 -1.1 97,041 - GFF860 0.90 -0.4 97,042 + GFF860 0.90 -1.4 97,042 + GFF860 0.90 +0.5 97,097 + -0.1 97,097 + -1.1 97,097 + -1.1 97,097 + -1.2 97,132 + -0.1 97,139 + -1.1 97,140 - -2.1 97,140 - -0.4 97,140 - +0.3 97,159 + -0.9 97,159 + -1.0 97,159 + -1.5 97,166 + -1.4 97,266 - +0.5 97,266 - -3.2 97,270 - -0.7 97,457 + GFF861 0.22 -1.4 97,457 + GFF861 0.22 -1.6 97,458 - GFF861 0.22 +0.6 97,458 - GFF861 0.22 -1.7 97,527 + GFF861 0.26 -1.7 97,527 + GFF861 0.26 -1.1 97,527 + GFF861 0.26 -1.7 97,527 + GFF861 0.26 +0.3 97,527 + GFF861 0.26 -0.9 97,527 + GFF861 0.26 -0.7 97,527 + GFF861 0.26 -0.5 97,547 + GFF861 0.28 -3.2 97,641 + GFF861 0.34 -0.6 97,641 + GFF861 0.34 +0.2 97,642 - GFF861 0.34 -0.9 97,642 - GFF861 0.34 -1.1 97,642 - GFF861 0.34 -1.9 97,643 + GFF861 0.34 -1.1 97,643 + GFF861 0.34 -0.4 97,643 + GFF861 0.34 -2.7 97,643 + GFF861 0.34 +0.6 97,643 + GFF861 0.34 -0.7 97,644 - GFF861 0.34 -1.4 97,644 - GFF861 0.34 -0.9 97,644 - GFF861 0.34 -1.1 97,701 + GFF861 0.38 -0.7 97,701 + GFF861 0.38 -1.4 97,702 - GFF861 0.38 -0.9 97,702 - GFF861 0.38 -0.7 97,702 - GFF861 0.38 -1.2 97,702 - GFF861 0.38 -2.6 97,702 - GFF861 0.38 -0.7 97,884 + GFF861 0.51 +0.1 97,885 - GFF861 0.51 +0.6 97,947 + GFF861 0.55 -1.4 97,947 + GFF861 0.55 -2.0 98,057 + GFF861 0.62 +0.2 98,078 + GFF861 0.64 -0.4 98,078 + GFF861 0.64 -1.1 98,143 + GFF861 0.68 -0.3 98,143 + GFF861 0.68 -1.1 98,171 + GFF861 0.70 -0.3 98,171 + GFF861 0.70 +0.1 98,172 - GFF861 0.70 -0.1 98,189 + GFF861 0.71 -0.7 98,264 + GFF861 0.76 -1.2 98,265 - GFF861 0.76 -1.7 98,265 - GFF861 0.76 -1.1 98,339 - GFF861 0.81 -1.1 98,339 - GFF861 0.81 -1.1 98,339 - GFF861 0.81 -0.3 98,403 + GFF861 0.86 -1.1 98,492 + +0.1 98,492 + -1.2 98,493 - -0.7 98,493 - -1.1 98,578 - -0.5 98,598 - -0.9 98,645 + +0.6 98,645 + +0.9 98,645 + +0.4 98,646 - -0.4 98,646 - +0.6 98,676 + -1.9 98,676 + +0.9 98,685 + -0.3 98,686 - +0.1 98,686 - -1.7 98,795 - GFF862 0.20 +0.6 98,842 - GFF862 0.29 -0.1 98,853 + GFF862 0.31 -0.4 98,854 - GFF862 0.31 +0.9 98,871 - GFF862 0.34 -0.3 98,999 + GFF862 0.57 +0.2 99,000 - GFF862 0.58 -0.6 99,000 - GFF862 0.58 -0.9 99,011 + GFF862 0.60 -1.1 99,012 - GFF862 0.60 +0.4 99,012 - GFF862 0.60 -1.4 99,038 + GFF862 0.64 +0.1 99,038 + GFF862 0.64 -0.4 99,039 - GFF862 0.65 +0.5 99,088 + GFF862 0.74 -1.0 99,167 + GFF862 0.88 +0.3 99,168 - GFF862 0.88 -0.1 99,233 + -1.1 99,233 + +0.1 99,233 + -0.1 99,234 - -0.3 99,234 - -2.6 99,234 - -0.6 99,234 - -1.2
Or see this region's nucleotide sequence