Strain Fitness in Methylophilus sp. DMC18

Strain Fitness in Methylophilus sp. DMC18 around GFF858

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	D-Glucose and casaminos (C)
				remove
93,559	-	GFF857	0.11	+0.5
93,563	-	GFF857	0.11	-0.5
93,572	+	GFF857	0.13	-0.1
93,579	+	GFF857	0.14	-0.1
93,579	+	GFF857	0.14	-0.4
93,588	-	GFF857	0.15	-0.7
93,593	+	GFF857	0.16	-0.3
93,593	+	GFF857	0.16	-1.7
93,594	-	GFF857	0.16	+0.1
93,594	-	GFF857	0.16	-1.4
93,594	-	GFF857	0.16	-0.4
93,612	-	GFF857	0.19	-0.1
93,612	-	GFF857	0.19	+0.3
93,615	+	GFF857	0.20	-0.9
93,616	-	GFF857	0.20	-0.6
93,616	-	GFF857	0.20	-0.9
93,645	+	GFF857	0.25	-0.3
93,645	+	GFF857	0.25	-1.4
93,645	+	GFF857	0.25	+0.5
93,646	-	GFF857	0.25	-1.1
93,649	+	GFF857	0.26	-0.7
93,650	-	GFF857	0.26	-0.7
93,650	-	GFF857	0.26	-0.1
93,650	-	GFF857	0.26	-0.0
93,652	+	GFF857	0.26	-0.7
93,652	+	GFF857	0.26	-1.4
93,652	+	GFF857	0.26	-0.1
93,652	+	GFF857	0.26	-1.4
93,652	+	GFF857	0.26	+0.1
93,653	-	GFF857	0.26	-1.6
93,653	-	GFF857	0.26	-0.0
93,653	-	GFF857	0.26	-1.0
93,653	-	GFF857	0.26	-0.7
93,677	-	GFF857	0.30	-0.3
93,697	-	GFF857	0.33	-1.1
93,697	-	GFF857	0.33	-1.1
93,715	+	GFF857	0.36	+0.9
93,723	+	GFF857	0.38	-1.1
93,723	+	GFF857	0.38	-0.7
93,724	-	GFF857	0.38	-1.4
93,756	-	GFF857	0.43	+0.4
93,756	-	GFF857	0.43	-0.6
93,756	-	GFF857	0.43	-0.2
93,756	-	GFF857	0.43	-1.4
93,777	+	GFF857	0.47	-2.1
93,777	+	GFF857	0.47	-0.1
93,777	+	GFF857	0.47	-1.7
93,777	+	GFF857	0.47	-0.5
93,778	-	GFF857	0.47	-1.3
93,778	-	GFF857	0.47	-0.8
93,778	-	GFF857	0.47	-0.5
93,778	-	GFF857	0.47	+0.7
93,844	+	GFF857	0.58	-1.2
93,845	+	GFF857	0.58	-1.8
93,852	+	GFF857	0.59	+0.3
93,892	+	GFF857	0.66	+0.1
93,904	+	GFF857	0.68	-1.1
93,905	-	GFF857	0.68	-0.8
93,905	-	GFF857	0.68	-0.1
93,917	+	GFF857	0.70	+0.1
93,918	-	GFF857	0.70	-0.7
93,918	-	GFF857	0.70	-1.7
93,921	+	GFF857	0.71	-1.6
93,922	-	GFF857	0.71	-1.9
93,922	-	GFF857	0.71	-0.3
93,922	-	GFF857	0.71	-1.1
93,922	-	GFF857	0.71	-0.3
93,922	-	GFF857	0.71	+0.5
93,922	-	GFF857	0.71	-1.9
93,922	-	GFF857	0.71	-0.5
93,922	-	GFF857	0.71	-0.4
93,925	-	GFF857	0.71	+0.4
93,932	+	GFF857	0.72	-1.2
93,932	+	GFF857	0.72	-0.9
93,933	-	GFF857	0.73	+0.6
93,933	-	GFF857	0.73	-0.7
93,933	-	GFF857	0.73	-1.1
93,933	-	GFF857	0.73	+1.5
93,942	+	GFF857	0.74	-0.1
93,942	+	GFF857	0.74	-0.8
93,942	+	GFF857	0.74	-0.1
93,942	+	GFF857	0.74	-1.5
93,943	-	GFF857	0.74	+0.3
93,943	-	GFF857	0.74	-0.5
93,943	-	GFF857	0.74	-0.4
93,951	+	GFF857	0.76	-1.0
93,960	+	GFF857	0.77	-1.7
93,981	+	GFF857	0.81	+0.6
93,982	-	GFF857	0.81	-1.4
93,982	-	GFF857	0.81	-0.9
93,982	-	GFF857	0.81	-0.4
94,011	-	GFF857	0.86	-1.1
94,011	-	GFF857	0.86	-0.9
94,011	-	GFF857	0.86	-0.5
94,011	-	GFF857	0.86	-0.9
94,053	+			-0.9
94,053	+			-0.5
94,075	+			-0.9
94,075	+			-1.3
94,076	-			-0.2
94,076	-			-1.4
94,076	-			-0.8
94,076	-			-0.9
94,079	+			-0.9
94,079	+			-0.5
94,130	+			-1.1
94,130	+			-0.9
94,130	+			-1.3
94,130	+			+0.5
94,130	+			-0.1
94,130	+			-0.7
94,130	+			-0.1
94,131	-			-1.7
94,131	-			-1.4
94,131	-			-1.4
94,131	-			+1.1
94,131	-			-1.5
94,135	+			-0.6
94,136	-			+0.2
94,136	-			+1.1
94,136	-			-0.3
94,137	+			-1.4
94,137	+			+0.0
94,138	-			-1.1
94,138	-			-0.9
94,138	-			-1.0
94,138	-			-0.3
94,138	-			+0.3
94,153	+			-1.9
94,153	+			-0.9
94,154	-			-0.7
94,154	-			-1.1
94,154	-			-0.3
94,155	+			-0.3
94,156	-			-0.8
94,156	-			-1.3
94,156	-			+0.3
94,156	-			-0.6
94,156	-			-0.7
94,156	-			-0.7
94,190	+			-0.1
94,204	-			-0.5
94,204	-			+0.6
94,204	-			-1.0
94,211	-			+0.1
94,237	-			-0.6
94,237	-			-0.2
94,283	-			-0.7
94,283	-			-2.3
94,285	+			-0.1
94,306	+			-1.4
94,306	+			-1.4
94,306	+			+0.9
94,306	+			-1.9
94,307	-			+0.9
94,307	-			-1.0
94,307	-			+0.2
94,313	+			+0.3
94,314	-			-0.1
94,314	-			-0.1
94,325	+			-0.1
94,325	+			-1.4
94,325	+			-1.1
94,326	-			-0.1
94,326	-			-0.3
94,348	+			-1.1
94,348	+			+0.1
94,349	-			-1.7
94,503	-			-0.6
94,515	+			-0.1
94,540	+			-2.9
94,541	-			-0.9
94,541	-			+0.6
94,541	-			-0.8
94,541	-			-0.4
94,541	-			-0.6
94,541	-			-1.1
94,544	+			-1.1
94,544	+			-0.1
94,544	+			-1.1
94,544	+			+0.1
94,544	+			-0.3
94,545	-			-1.0
94,545	-			+0.9
94,545	-			-1.1
94,545	-			-0.1
94,545	-			-1.0
94,545	-			+0.1
94,545	-			+0.7
94,545	-			-1.4
94,545	-			-0.3
94,545	-			-0.8
94,545	-			-0.0
94,545	-			+0.5
94,545	-			-1.2
94,545	-			-0.7
94,548	+			-0.7
94,644	+	GFF858	0.10	-1.1
94,644	+	GFF858	0.10	-1.7
94,645	-	GFF858	0.10	-1.1
94,754	+	GFF858	0.22	-1.1
94,761	-	GFF858	0.22	-1.1
94,809	-	GFF858	0.27	-1.1
94,887	-	GFF858	0.35	-1.4
94,940	+	GFF858	0.41	-1.1
94,950	-	GFF858	0.42	-2.3
95,091	+	GFF858	0.57	-1.1
95,092	-	GFF858	0.57	+0.5
95,092	-	GFF858	0.57	-0.9
95,204	+	GFF858	0.68	-0.9
95,205	-	GFF858	0.69	-0.3
95,243	+	GFF858	0.72	-0.1
95,244	-	GFF858	0.73	-1.4
95,244	-	GFF858	0.73	+0.5
95,538	+			+0.1
95,538	+			-0.4
95,587	+			-1.6
95,588	-			-0.1
95,593	-			-1.1
95,593	-			-0.8
95,632	+	GFF859	0.14	+0.1
95,673	+	GFF859	0.19	-0.4
95,674	-	GFF859	0.19	-0.6
95,674	-	GFF859	0.19	-0.4
95,744	+	GFF859	0.27	-0.7
95,745	-	GFF859	0.27	-0.3
95,745	-	GFF859	0.27	-1.8
95,777	+	GFF859	0.31	+1.5
95,777	+	GFF859	0.31	-0.9
95,777	+	GFF859	0.31	-1.9
95,778	-	GFF859	0.31	-0.0
95,800	+	GFF859	0.34	-1.7
95,800	+	GFF859	0.34	-1.1
95,801	-	GFF859	0.34	-0.8
95,801	-	GFF859	0.34	-1.1
95,801	-	GFF859	0.34	-1.7
95,801	-	GFF859	0.34	-1.0
95,801	-	GFF859	0.34	-0.3
95,801	-	GFF859	0.34	-0.7
95,801	-	GFF859	0.34	-2.1
95,801	-	GFF859	0.34	-0.9
95,801	-	GFF859	0.34	-1.7
95,801	-	GFF859	0.34	-1.9
95,802	+	GFF859	0.34	+0.1
95,802	+	GFF859	0.34	-0.9
95,803	-	GFF859	0.34	-0.3
95,803	-	GFF859	0.34	-0.5
95,803	-	GFF859	0.34	-0.4
95,803	-	GFF859	0.34	-0.3
95,803	-	GFF859	0.34	-0.1
95,803	-	GFF859	0.34	-0.3
95,828	-	GFF859	0.37	-0.2
95,833	+	GFF859	0.38	-0.7
95,833	+	GFF859	0.38	-1.1
95,834	-	GFF859	0.38	-0.9
95,834	-	GFF859	0.38	-0.6
95,834	-	GFF859	0.38	-1.1
95,834	-	GFF859	0.38	-1.6
95,834	-	GFF859	0.38	-1.4
95,839	-	GFF859	0.38	-1.1
95,899	+	GFF859	0.45	-1.9
95,900	-	GFF859	0.45	-0.3
95,900	-	GFF859	0.45	-0.9
95,900	-	GFF859	0.45	-0.6
95,900	-	GFF859	0.45	-1.0
95,900	-	GFF859	0.45	-1.9
95,900	-	GFF859	0.45	-0.7
95,900	-	GFF859	0.45	-2.3
95,945	-	GFF859	0.51	-1.1
96,020	+	GFF859	0.59	-1.1
96,020	+	GFF859	0.59	-0.1
96,020	+	GFF859	0.59	-1.0
96,021	-	GFF859	0.60	-0.9
96,021	-	GFF859	0.60	-0.1
96,045	+	GFF859	0.62	+1.2
96,045	+	GFF859	0.62	-0.7
96,046	-	GFF859	0.62	+0.5
96,079	+	GFF859	0.66	-0.7
96,079	+	GFF859	0.66	-0.5
96,145	+	GFF859	0.74	-1.1
96,145	+	GFF859	0.74	-1.3
96,146	-	GFF859	0.74	+0.2
96,148	+	GFF859	0.74	-1.4
96,148	+	GFF859	0.74	-0.1
96,149	-	GFF859	0.74	-0.0
96,149	-	GFF859	0.74	-0.4
96,149	-	GFF859	0.74	-0.7
96,149	-	GFF859	0.74	-0.5
96,152	+	GFF859	0.75	-0.3
96,152	+	GFF859	0.75	+0.5
96,153	-	GFF859	0.75	-0.7
96,176	+	GFF859	0.78	+0.5
96,176	+	GFF859	0.78	-0.5
96,176	+	GFF859	0.78	+0.7
96,177	-	GFF859	0.78	-0.7
96,178	+	GFF859	0.78	-1.1
96,178	+	GFF859	0.78	-1.6
96,179	-	GFF859	0.78	-1.1
96,179	-	GFF859	0.78	-1.1
96,227	+	GFF859	0.84	-1.7
96,228	-	GFF859	0.84	-0.3
96,322	+			-0.8
96,322	+			-1.9
96,322	+			-0.1
96,322	+			-0.1
96,322	+			-1.7
96,323	-			-1.6
96,323	-			-1.0
96,344	+			-1.1
96,344	+			+0.4
96,345	-			-1.4
96,345	-			-2.3
96,345	-			-0.9
96,345	-			-0.4
96,397	+			-1.7
96,397	+			-1.0
96,397	+			-0.9
96,397	+			+0.2
96,398	-			+0.4
96,398	-			-0.5
96,398	-			-1.1
96,398	-			-0.4
96,402	+			-0.3
96,402	+			-0.9
96,402	+			-1.9
96,402	+			+0.5
96,402	+			-0.2
96,403	-			-1.6
96,403	-			+0.9
96,403	-			-1.1
96,445	-			-1.4
96,460	+			-1.1
96,460	+			-2.4
96,461	-			-1.1
96,467	+			-1.2
96,467	+			-0.3
96,468	-			-1.1
96,470	+			-0.8
96,470	+			-0.5
96,478	+			+0.2
96,479	-			+0.6
96,479	-			-0.2
96,481	+			+0.0
96,482	-			-0.4

Or see this region's nucleotide sequence