Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF798 and GFF799 are separated by 214 nucleotides GFF799 and GFF800 are separated by 112 nucleotides
GFF798 - Blue light- and temperature-regulated antirepressor BluF, at 37,739 to 38,500
GFF798
GFF799 - hypothetical protein, at 38,715 to 39,344
GFF799
GFF800 - Sensor histidine kinase RcsC, at 39,457 to 40,923
GFF800
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 37.740 kb on + strand at 37.740 kb on + strand at 37.741 kb on - strand at 37.741 kb on - strand at 37.741 kb on - strand at 37.741 kb on - strand at 37.741 kb on - strand at 37.769 kb on - strand at 37.822 kb on - strand, within GFF798 at 37.822 kb on - strand, within GFF798 at 37.822 kb on - strand, within GFF798 at 37.825 kb on - strand, within GFF798 at 37.860 kb on - strand, within GFF798 at 37.860 kb on - strand, within GFF798 at 37.960 kb on + strand, within GFF798 at 37.960 kb on + strand, within GFF798 at 37.961 kb on - strand, within GFF798 at 37.970 kb on + strand, within GFF798 at 37.970 kb on + strand, within GFF798 at 38.002 kb on + strand, within GFF798 at 38.003 kb on - strand, within GFF798 at 38.006 kb on - strand, within GFF798 at 38.006 kb on - strand, within GFF798 at 38.006 kb on - strand, within GFF798 at 38.028 kb on - strand, within GFF798 at 38.028 kb on - strand, within GFF798 at 38.044 kb on - strand, within GFF798 at 38.229 kb on + strand, within GFF798 at 38.229 kb on + strand, within GFF798 at 38.230 kb on - strand, within GFF798 at 38.230 kb on - strand, within GFF798 at 38.327 kb on - strand, within GFF798 at 38.327 kb on - strand, within GFF798 at 38.390 kb on + strand, within GFF798 at 38.390 kb on + strand, within GFF798 at 38.391 kb on - strand, within GFF798 at 38.391 kb on - strand, within GFF798 at 38.435 kb on - strand at 38.482 kb on + strand at 38.502 kb on + strand at 38.503 kb on - strand at 38.503 kb on - strand at 38.503 kb on - strand at 38.503 kb on - strand at 38.516 kb on - strand at 38.516 kb on - strand at 38.537 kb on + strand at 38.538 kb on - strand at 38.584 kb on + strand at 38.599 kb on - strand at 38.604 kb on + strand at 38.604 kb on + strand at 38.605 kb on - strand at 38.607 kb on + strand at 38.607 kb on + strand at 38.608 kb on - strand at 38.608 kb on - strand at 38.608 kb on - strand at 38.608 kb on - strand at 38.608 kb on - strand at 38.608 kb on - strand at 38.608 kb on - strand at 38.608 kb on - strand at 38.608 kb on - strand at 38.611 kb on - strand at 38.645 kb on + strand at 38.647 kb on + strand at 38.647 kb on + strand at 38.648 kb on - strand at 38.648 kb on - strand at 38.660 kb on + strand at 38.661 kb on - strand at 38.661 kb on - strand at 38.661 kb on - strand at 38.661 kb on - strand at 38.662 kb on + strand at 38.663 kb on - strand at 38.663 kb on - strand at 38.663 kb on - strand at 38.663 kb on - strand at 38.663 kb on - strand at 38.679 kb on + strand at 38.679 kb on + strand at 38.679 kb on + strand at 38.679 kb on + strand at 38.679 kb on + strand at 38.679 kb on + strand at 38.679 kb on + strand at 38.679 kb on + strand at 38.680 kb on - strand at 38.680 kb on - strand at 38.680 kb on - strand at 38.680 kb on - strand at 38.680 kb on - strand at 38.680 kb on - strand at 38.680 kb on - strand at 38.680 kb on - strand at 38.681 kb on + strand at 38.681 kb on + strand at 38.681 kb on + strand at 38.681 kb on + strand at 38.681 kb on + strand at 38.681 kb on + strand at 38.681 kb on + strand at 38.681 kb on + strand at 38.681 kb on + strand at 38.681 kb on + strand at 38.681 kb on + strand at 38.681 kb on + strand at 38.681 kb on + strand at 38.681 kb on + strand at 38.681 kb on + strand at 38.681 kb on + strand at 38.682 kb on - strand at 38.682 kb on - strand at 38.682 kb on - strand at 38.682 kb on - strand at 38.682 kb on - strand at 38.682 kb on - strand at 38.682 kb on - strand at 38.682 kb on - strand at 38.682 kb on - strand at 38.682 kb on - strand at 38.682 kb on - strand at 38.682 kb on - strand at 38.685 kb on + strand at 38.685 kb on + strand at 38.685 kb on + strand at 38.685 kb on + strand at 38.685 kb on + strand at 38.685 kb on + strand at 38.685 kb on + strand at 38.685 kb on + strand at 38.685 kb on + strand at 38.685 kb on + strand at 38.685 kb on + strand at 38.685 kb on + strand at 38.686 kb on - strand at 38.686 kb on - strand at 38.686 kb on - strand at 38.686 kb on - strand at 38.686 kb on - strand at 38.686 kb on - strand at 38.686 kb on - strand at 38.686 kb on - strand at 38.686 kb on - strand at 38.686 kb on - strand at 38.686 kb on - strand at 38.686 kb on - strand at 38.686 kb on - strand at 38.686 kb on - strand at 38.686 kb on - strand at 38.686 kb on - strand at 38.686 kb on - strand at 38.686 kb on - strand at 38.686 kb on - strand at 38.740 kb on + strand at 38.741 kb on - strand at 38.818 kb on + strand, within GFF799 at 38.818 kb on + strand, within GFF799 at 38.818 kb on + strand, within GFF799 at 38.819 kb on - strand, within GFF799 at 38.819 kb on - strand, within GFF799 at 38.829 kb on + strand, within GFF799 at 38.843 kb on + strand, within GFF799 at 38.844 kb on - strand, within GFF799 at 38.878 kb on + strand, within GFF799 at 38.879 kb on - strand, within GFF799 at 38.930 kb on + strand, within GFF799 at 38.934 kb on - strand, within GFF799 at 38.934 kb on - strand, within GFF799 at 39.160 kb on + strand, within GFF799 at 39.161 kb on - strand, within GFF799 at 39.257 kb on + strand, within GFF799 at 39.258 kb on - strand, within GFF799 at 39.375 kb on - strand at 39.484 kb on - strand at 39.530 kb on + strand at 39.815 kb on + strand, within GFF800 at 39.815 kb on + strand, within GFF800 at 39.816 kb on - strand, within GFF800 at 39.816 kb on - strand, within GFF800 at 39.816 kb on - strand, within GFF800 at 39.916 kb on + strand, within GFF800 at 39.917 kb on - strand, within GFF800 at 40.046 kb on - strand, within GFF800 at 40.083 kb on - strand, within GFF800 at 40.083 kb on - strand, within GFF800 at 40.083 kb on - strand, within GFF800 at 40.083 kb on - strand, within GFF800 at 40.083 kb on - strand, within GFF800 at 40.083 kb on - strand, within GFF800 at 40.192 kb on - strand, within GFF800 at 40.311 kb on - strand, within GFF800
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 37,740 + -0.4 37,740 + -0.1 37,741 - -1.1 37,741 - +0.2 37,741 - -0.4 37,741 - +0.3 37,741 - -0.9 37,769 - +0.5 37,822 - GFF798 0.11 -1.0 37,822 - GFF798 0.11 +0.7 37,822 - GFF798 0.11 -0.7 37,825 - GFF798 0.11 -1.8 37,860 - GFF798 0.16 +0.5 37,860 - GFF798 0.16 +0.1 37,960 + GFF798 0.29 +0.1 37,960 + GFF798 0.29 -0.4 37,961 - GFF798 0.29 -0.1 37,970 + GFF798 0.30 +1.5 37,970 + GFF798 0.30 -0.1 38,002 + GFF798 0.35 +1.6 38,003 - GFF798 0.35 -0.7 38,006 - GFF798 0.35 -1.1 38,006 - GFF798 0.35 -0.9 38,006 - GFF798 0.35 -1.1 38,028 - GFF798 0.38 -1.0 38,028 - GFF798 0.38 -1.3 38,044 - GFF798 0.40 +0.5 38,229 + GFF798 0.64 -0.1 38,229 + GFF798 0.64 -0.1 38,230 - GFF798 0.64 -0.1 38,230 - GFF798 0.64 -2.4 38,327 - GFF798 0.77 -1.7 38,327 - GFF798 0.77 -0.2 38,390 + GFF798 0.85 +2.1 38,390 + GFF798 0.85 -0.4 38,391 - GFF798 0.86 -1.1 38,391 - GFF798 0.86 -1.2 38,435 - -1.7 38,482 + -0.1 38,502 + +0.5 38,503 - -0.7 38,503 - -0.8 38,503 - -2.4 38,503 - -1.2 38,516 - -1.4 38,516 - -1.1 38,537 + +0.1 38,538 - -1.3 38,584 + -0.6 38,599 - -0.3 38,604 + -1.1 38,604 + +0.1 38,605 - +0.0 38,607 + -0.9 38,607 + -0.7 38,608 - -0.3 38,608 - +0.1 38,608 - -1.4 38,608 - -1.4 38,608 - -1.4 38,608 - -0.6 38,608 - -0.6 38,608 - +0.5 38,608 - -1.1 38,611 - -1.4 38,645 + -1.1 38,647 + -0.6 38,647 + -0.7 38,648 - -1.0 38,648 - -0.9 38,660 + -0.1 38,661 - -0.1 38,661 - -0.1 38,661 - +0.6 38,661 - -0.1 38,662 + +0.2 38,663 - -0.4 38,663 - -0.4 38,663 - -0.1 38,663 - -1.4 38,663 - -0.6 38,679 + +1.5 38,679 + -1.0 38,679 + -0.1 38,679 + +0.4 38,679 + -1.4 38,679 + -0.4 38,679 + -0.3 38,679 + -1.9 38,680 - -1.9 38,680 - -1.6 38,680 - +0.4 38,680 - -1.6 38,680 - +0.1 38,680 - +0.5 38,680 - -1.1 38,680 - -0.5 38,681 + +1.5 38,681 + -1.9 38,681 + -0.9 38,681 + +0.5 38,681 + -0.1 38,681 + +0.1 38,681 + -1.5 38,681 + -0.5 38,681 + -0.9 38,681 + +0.1 38,681 + -0.3 38,681 + -1.1 38,681 + -0.6 38,681 + -0.1 38,681 + -0.1 38,681 + -0.8 38,682 - -1.4 38,682 - -1.1 38,682 - +0.1 38,682 - -1.3 38,682 - -0.6 38,682 - -0.8 38,682 - +1.1 38,682 - -0.1 38,682 - -1.1 38,682 - -0.9 38,682 - +0.1 38,682 - +0.5 38,685 + +0.5 38,685 + -1.9 38,685 + -0.3 38,685 + -0.7 38,685 + -1.2 38,685 + -0.5 38,685 + -0.4 38,685 + -0.1 38,685 + -0.4 38,685 + -0.5 38,685 + -0.4 38,685 + -0.0 38,686 - -0.9 38,686 - +0.9 38,686 - -0.3 38,686 - -0.5 38,686 - -0.1 38,686 - -0.1 38,686 - -0.3 38,686 - -1.1 38,686 - -1.5 38,686 - -1.2 38,686 - -1.7 38,686 - -0.1 38,686 - -0.8 38,686 - -1.1 38,686 - +0.2 38,686 - +0.3 38,686 - +0.9 38,686 - -0.5 38,686 - +0.6 38,740 + -0.3 38,741 - +1.5 38,818 + GFF799 0.16 +0.9 38,818 + GFF799 0.16 -1.1 38,818 + GFF799 0.16 -0.7 38,819 - GFF799 0.17 -0.9 38,819 - GFF799 0.17 -2.2 38,829 + GFF799 0.18 -0.1 38,843 + GFF799 0.20 -0.3 38,844 - GFF799 0.20 -1.6 38,878 + GFF799 0.26 -0.1 38,879 - GFF799 0.26 +0.9 38,930 + GFF799 0.34 -1.1 38,934 - GFF799 0.35 -2.0 38,934 - GFF799 0.35 -1.4 39,160 + GFF799 0.71 -1.4 39,161 - GFF799 0.71 -1.2 39,257 + GFF799 0.86 -2.4 39,258 - GFF799 0.86 +0.3 39,375 - -2.3 39,484 - -0.2 39,530 + -0.4 39,815 + GFF800 0.24 -0.3 39,815 + GFF800 0.24 -2.6 39,816 - GFF800 0.24 -0.7 39,816 - GFF800 0.24 -1.0 39,816 - GFF800 0.24 -0.7 39,916 + GFF800 0.31 -0.7 39,917 - GFF800 0.31 -0.6 40,046 - GFF800 0.40 -2.1 40,083 - GFF800 0.43 -1.4 40,083 - GFF800 0.43 -1.3 40,083 - GFF800 0.43 -2.1 40,083 - GFF800 0.43 -0.4 40,083 - GFF800 0.43 -1.6 40,083 - GFF800 0.43 -2.8 40,192 - GFF800 0.50 -1.8 40,311 - GFF800 0.58 -1.5
Or see this region's nucleotide sequence