Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF716 and GFF717 are separated by 16 nucleotides GFF717 and GFF718 overlap by 4 nucleotides GFF718 and GFF719 overlap by 1 nucleotides
GFF716 - Tuberculostearic acid methyltransferase UfaA1, at 797,059 to 798,348
GFF716
GFF717 - hypothetical protein, at 798,365 to 799,138
GFF717
GFF718 - hypothetical protein, at 799,135 to 800,388
GFF718
GFF719 - hypothetical protein, at 800,388 to 801,332
GFF719
Position (kb) 799
800
801 Strain fitness (log2 ratio) -2
-1
0
1
2 at 798.136 kb on - strand, within GFF716 at 798.190 kb on - strand, within GFF716 at 798.205 kb on - strand, within GFF716 at 798.205 kb on - strand, within GFF716 at 798.205 kb on - strand, within GFF716 at 798.205 kb on - strand, within GFF716 at 798.348 kb on + strand at 798.348 kb on + strand at 798.349 kb on - strand at 798.349 kb on - strand at 798.349 kb on - strand at 798.349 kb on - strand at 798.349 kb on - strand at 798.351 kb on + strand at 798.370 kb on + strand at 798.371 kb on - strand at 798.371 kb on - strand at 798.371 kb on - strand at 798.371 kb on - strand at 798.391 kb on - strand at 798.391 kb on - strand at 798.391 kb on - strand at 798.433 kb on - strand at 798.433 kb on - strand at 798.433 kb on - strand at 798.477 kb on - strand, within GFF717 at 798.477 kb on - strand, within GFF717 at 798.515 kb on - strand, within GFF717 at 798.515 kb on - strand, within GFF717 at 798.515 kb on - strand, within GFF717 at 798.568 kb on + strand, within GFF717 at 798.568 kb on + strand, within GFF717 at 798.569 kb on - strand, within GFF717 at 798.569 kb on - strand, within GFF717 at 798.569 kb on - strand, within GFF717 at 798.569 kb on - strand, within GFF717 at 798.569 kb on - strand, within GFF717 at 798.572 kb on + strand, within GFF717 at 798.572 kb on + strand, within GFF717 at 798.573 kb on - strand, within GFF717 at 798.573 kb on - strand, within GFF717 at 798.573 kb on - strand, within GFF717 at 798.573 kb on - strand, within GFF717 at 798.573 kb on - strand, within GFF717 at 798.573 kb on - strand, within GFF717 at 798.573 kb on - strand, within GFF717 at 798.573 kb on - strand, within GFF717 at 798.573 kb on - strand, within GFF717 at 798.573 kb on - strand, within GFF717 at 798.573 kb on - strand, within GFF717 at 798.631 kb on + strand, within GFF717 at 798.632 kb on - strand, within GFF717 at 798.632 kb on - strand, within GFF717 at 798.632 kb on - strand, within GFF717 at 798.632 kb on - strand, within GFF717 at 798.632 kb on - strand, within GFF717 at 798.632 kb on - strand, within GFF717 at 798.632 kb on - strand, within GFF717 at 798.632 kb on - strand, within GFF717 at 798.632 kb on - strand, within GFF717 at 798.632 kb on - strand, within GFF717 at 798.632 kb on - strand, within GFF717 at 798.632 kb on - strand, within GFF717 at 798.632 kb on - strand, within GFF717 at 798.665 kb on - strand, within GFF717 at 798.669 kb on - strand, within GFF717 at 798.698 kb on + strand, within GFF717 at 798.698 kb on + strand, within GFF717 at 798.698 kb on + strand, within GFF717 at 798.698 kb on + strand, within GFF717 at 798.698 kb on + strand, within GFF717 at 798.699 kb on - strand, within GFF717 at 798.699 kb on - strand, within GFF717 at 798.699 kb on - strand, within GFF717 at 798.699 kb on - strand, within GFF717 at 798.699 kb on - strand, within GFF717 at 798.699 kb on - strand, within GFF717 at 798.699 kb on - strand, within GFF717 at 798.699 kb on - strand, within GFF717 at 798.699 kb on - strand, within GFF717 at 798.699 kb on - strand, within GFF717 at 798.699 kb on - strand, within GFF717 at 798.699 kb on - strand, within GFF717 at 798.702 kb on + strand, within GFF717 at 798.703 kb on - strand, within GFF717 at 798.703 kb on - strand, within GFF717 at 798.703 kb on - strand, within GFF717 at 798.728 kb on - strand, within GFF717 at 798.756 kb on - strand, within GFF717 at 798.756 kb on - strand, within GFF717 at 798.756 kb on - strand, within GFF717 at 798.781 kb on - strand, within GFF717 at 798.925 kb on - strand, within GFF717 at 798.943 kb on - strand, within GFF717 at 798.964 kb on - strand, within GFF717 at 799.017 kb on + strand, within GFF717 at 799.024 kb on + strand, within GFF717 at 799.024 kb on + strand, within GFF717 at 799.088 kb on - strand at 799.089 kb on + strand at 799.089 kb on + strand at 799.090 kb on - strand at 799.090 kb on - strand at 799.090 kb on - strand at 799.109 kb on - strand at 799.109 kb on - strand at 799.139 kb on - strand at 799.139 kb on - strand at 799.139 kb on - strand at 799.139 kb on - strand at 799.139 kb on - strand at 799.163 kb on - strand at 799.163 kb on - strand at 799.293 kb on - strand, within GFF718 at 799.293 kb on - strand, within GFF718 at 799.352 kb on + strand, within GFF718 at 799.352 kb on + strand, within GFF718 at 799.353 kb on - strand, within GFF718 at 799.353 kb on - strand, within GFF718 at 799.370 kb on - strand, within GFF718 at 799.411 kb on - strand, within GFF718 at 799.411 kb on - strand, within GFF718 at 799.411 kb on - strand, within GFF718 at 799.412 kb on + strand, within GFF718 at 799.412 kb on + strand, within GFF718 at 799.412 kb on + strand, within GFF718 at 799.412 kb on + strand, within GFF718 at 799.412 kb on + strand, within GFF718 at 799.412 kb on + strand, within GFF718 at 799.412 kb on + strand, within GFF718 at 799.412 kb on + strand, within GFF718 at 799.413 kb on - strand, within GFF718 at 799.413 kb on - strand, within GFF718 at 799.413 kb on - strand, within GFF718 at 799.413 kb on - strand, within GFF718 at 799.413 kb on - strand, within GFF718 at 799.413 kb on - strand, within GFF718 at 799.413 kb on - strand, within GFF718 at 799.413 kb on - strand, within GFF718 at 799.455 kb on - strand, within GFF718 at 799.475 kb on - strand, within GFF718 at 799.514 kb on + strand, within GFF718 at 799.515 kb on - strand, within GFF718 at 799.515 kb on - strand, within GFF718 at 799.515 kb on - strand, within GFF718 at 799.546 kb on + strand, within GFF718 at 799.707 kb on + strand, within GFF718 at 799.708 kb on - strand, within GFF718 at 799.799 kb on - strand, within GFF718 at 799.897 kb on - strand, within GFF718 at 799.907 kb on + strand, within GFF718 at 799.907 kb on + strand, within GFF718 at 799.908 kb on - strand, within GFF718 at 799.908 kb on - strand, within GFF718 at 799.946 kb on - strand, within GFF718 at 799.949 kb on + strand, within GFF718 at 799.949 kb on + strand, within GFF718 at 799.950 kb on - strand, within GFF718 at 800.017 kb on - strand, within GFF718 at 800.034 kb on - strand, within GFF718 at 800.050 kb on + strand, within GFF718 at 800.051 kb on - strand, within GFF718 at 800.051 kb on - strand, within GFF718 at 800.051 kb on - strand, within GFF718 at 800.051 kb on - strand, within GFF718 at 800.094 kb on + strand, within GFF718 at 800.094 kb on + strand, within GFF718 at 800.095 kb on - strand, within GFF718 at 800.095 kb on - strand, within GFF718 at 800.096 kb on + strand, within GFF718 at 800.096 kb on + strand, within GFF718 at 800.096 kb on + strand, within GFF718 at 800.097 kb on - strand, within GFF718 at 800.097 kb on - strand, within GFF718 at 800.097 kb on - strand, within GFF718 at 800.193 kb on - strand, within GFF718 at 800.205 kb on + strand, within GFF718 at 800.205 kb on + strand, within GFF718 at 800.206 kb on - strand, within GFF718 at 800.209 kb on + strand, within GFF718 at 800.215 kb on - strand, within GFF718 at 800.224 kb on - strand, within GFF718 at 800.224 kb on - strand, within GFF718 at 800.224 kb on - strand, within GFF718 at 800.228 kb on - strand, within GFF718 at 800.228 kb on - strand, within GFF718 at 800.272 kb on - strand at 800.286 kb on - strand at 800.293 kb on - strand at 800.330 kb on + strand at 800.331 kb on - strand at 800.331 kb on - strand at 800.333 kb on + strand at 800.334 kb on - strand at 800.343 kb on + strand at 800.343 kb on + strand at 800.344 kb on - strand at 800.344 kb on - strand at 800.347 kb on - strand at 800.390 kb on - strand at 800.434 kb on - strand at 800.442 kb on + strand at 800.443 kb on - strand at 800.443 kb on - strand at 800.486 kb on - strand, within GFF719 at 800.488 kb on + strand, within GFF719 at 800.489 kb on - strand, within GFF719 at 800.489 kb on - strand, within GFF719 at 800.597 kb on + strand, within GFF719 at 800.597 kb on + strand, within GFF719 at 800.598 kb on - strand, within GFF719 at 800.716 kb on - strand, within GFF719 at 800.737 kb on - strand, within GFF719 at 800.749 kb on + strand, within GFF719 at 800.750 kb on - strand, within GFF719 at 800.750 kb on - strand, within GFF719 at 800.750 kb on - strand, within GFF719 at 800.750 kb on - strand, within GFF719 at 800.762 kb on + strand, within GFF719 at 800.763 kb on - strand, within GFF719 at 800.763 kb on - strand, within GFF719 at 800.763 kb on - strand, within GFF719 at 800.763 kb on - strand, within GFF719 at 800.869 kb on - strand, within GFF719 at 800.869 kb on - strand, within GFF719 at 800.908 kb on - strand, within GFF719 at 800.948 kb on + strand, within GFF719 at 800.949 kb on - strand, within GFF719 at 801.018 kb on + strand, within GFF719 at 801.045 kb on + strand, within GFF719 at 801.046 kb on - strand, within GFF719 at 801.046 kb on - strand, within GFF719 at 801.046 kb on - strand, within GFF719 at 801.046 kb on - strand, within GFF719 at 801.046 kb on - strand, within GFF719 at 801.101 kb on - strand, within GFF719 at 801.111 kb on - strand, within GFF719 at 801.133 kb on + strand, within GFF719 at 801.133 kb on + strand, within GFF719 at 801.134 kb on - strand, within GFF719 at 801.181 kb on + strand, within GFF719 at 801.182 kb on - strand, within GFF719 at 801.184 kb on - strand, within GFF719 at 801.184 kb on - strand, within GFF719 at 801.237 kb on + strand, within GFF719 at 801.237 kb on + strand, within GFF719 at 801.237 kb on + strand, within GFF719 at 801.238 kb on - strand at 801.307 kb on - strand at 801.351 kb on + strand at 801.351 kb on + strand at 801.371 kb on + strand at 801.371 kb on + strand at 801.372 kb on - strand at 801.372 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 798,136 - GFF716 0.83 +0.6 798,190 - GFF716 0.88 -1.7 798,205 - GFF716 0.89 -0.3 798,205 - GFF716 0.89 -0.4 798,205 - GFF716 0.89 -0.9 798,205 - GFF716 0.89 -1.5 798,348 + -0.6 798,348 + -0.1 798,349 - -1.8 798,349 - +0.9 798,349 - -0.9 798,349 - -0.7 798,349 - -0.4 798,351 + -0.6 798,370 + -0.8 798,371 - -0.5 798,371 - +0.6 798,371 - +0.2 798,371 - -1.0 798,391 - +0.2 798,391 - -0.5 798,391 - +0.6 798,433 - -0.1 798,433 - -0.4 798,433 - -0.3 798,477 - GFF717 0.14 -1.4 798,477 - GFF717 0.14 -1.0 798,515 - GFF717 0.19 +0.2 798,515 - GFF717 0.19 -0.6 798,515 - GFF717 0.19 -1.9 798,568 + GFF717 0.26 +0.9 798,568 + GFF717 0.26 +0.6 798,569 - GFF717 0.26 +0.4 798,569 - GFF717 0.26 -1.6 798,569 - GFF717 0.26 -0.1 798,569 - GFF717 0.26 +0.4 798,569 - GFF717 0.26 -0.8 798,572 + GFF717 0.27 +0.1 798,572 + GFF717 0.27 -1.0 798,573 - GFF717 0.27 -0.1 798,573 - GFF717 0.27 +0.9 798,573 - GFF717 0.27 -1.3 798,573 - GFF717 0.27 +0.5 798,573 - GFF717 0.27 +0.0 798,573 - GFF717 0.27 +0.1 798,573 - GFF717 0.27 -0.6 798,573 - GFF717 0.27 -0.4 798,573 - GFF717 0.27 +0.5 798,573 - GFF717 0.27 -0.1 798,573 - GFF717 0.27 +0.1 798,631 + GFF717 0.34 -1.7 798,632 - GFF717 0.34 -1.5 798,632 - GFF717 0.34 -1.5 798,632 - GFF717 0.34 -1.5 798,632 - GFF717 0.34 -0.5 798,632 - GFF717 0.34 -0.1 798,632 - GFF717 0.34 -1.7 798,632 - GFF717 0.34 -0.0 798,632 - GFF717 0.34 -0.1 798,632 - GFF717 0.34 -0.5 798,632 - GFF717 0.34 -1.0 798,632 - GFF717 0.34 -1.1 798,632 - GFF717 0.34 +0.4 798,632 - GFF717 0.34 +0.0 798,665 - GFF717 0.39 -0.5 798,669 - GFF717 0.39 -0.4 798,698 + GFF717 0.43 -0.7 798,698 + GFF717 0.43 -0.5 798,698 + GFF717 0.43 +1.1 798,698 + GFF717 0.43 -0.8 798,698 + GFF717 0.43 +0.9 798,699 - GFF717 0.43 -0.1 798,699 - GFF717 0.43 -0.2 798,699 - GFF717 0.43 -0.1 798,699 - GFF717 0.43 -0.7 798,699 - GFF717 0.43 +0.5 798,699 - GFF717 0.43 +0.1 798,699 - GFF717 0.43 -1.3 798,699 - GFF717 0.43 -0.3 798,699 - GFF717 0.43 -0.1 798,699 - GFF717 0.43 +0.9 798,699 - GFF717 0.43 -0.4 798,699 - GFF717 0.43 -0.1 798,702 + GFF717 0.44 -0.5 798,703 - GFF717 0.44 +1.5 798,703 - GFF717 0.44 -0.5 798,703 - GFF717 0.44 -0.6 798,728 - GFF717 0.47 -1.1 798,756 - GFF717 0.51 -0.0 798,756 - GFF717 0.51 +0.4 798,756 - GFF717 0.51 +0.1 798,781 - GFF717 0.54 -1.5 798,925 - GFF717 0.72 +0.1 798,943 - GFF717 0.75 -1.1 798,964 - GFF717 0.77 -1.4 799,017 + GFF717 0.84 +1.0 799,024 + GFF717 0.85 -0.1 799,024 + GFF717 0.85 -2.5 799,088 - -1.8 799,089 + -1.2 799,089 + +0.1 799,090 - -1.3 799,090 - -0.4 799,090 - -1.7 799,109 - -0.1 799,109 - +0.2 799,139 - +0.1 799,139 - -1.0 799,139 - -0.9 799,139 - -0.1 799,139 - -0.0 799,163 - +0.9 799,163 - -0.0 799,293 - GFF718 0.13 -1.9 799,293 - GFF718 0.13 +0.5 799,352 + GFF718 0.17 +0.1 799,352 + GFF718 0.17 +0.3 799,353 - GFF718 0.17 -0.4 799,353 - GFF718 0.17 +0.5 799,370 - GFF718 0.19 -0.5 799,411 - GFF718 0.22 -0.0 799,411 - GFF718 0.22 +0.5 799,411 - GFF718 0.22 -1.5 799,412 + GFF718 0.22 -1.0 799,412 + GFF718 0.22 +0.4 799,412 + GFF718 0.22 -1.1 799,412 + GFF718 0.22 -1.5 799,412 + GFF718 0.22 -0.1 799,412 + GFF718 0.22 -0.8 799,412 + GFF718 0.22 -0.5 799,412 + GFF718 0.22 -0.2 799,413 - GFF718 0.22 +0.1 799,413 - GFF718 0.22 -0.4 799,413 - GFF718 0.22 -1.5 799,413 - GFF718 0.22 -0.4 799,413 - GFF718 0.22 -1.7 799,413 - GFF718 0.22 +0.1 799,413 - GFF718 0.22 -0.5 799,413 - GFF718 0.22 -0.6 799,455 - GFF718 0.26 -1.7 799,475 - GFF718 0.27 -0.8 799,514 + GFF718 0.30 +0.5 799,515 - GFF718 0.30 -0.0 799,515 - GFF718 0.30 -0.0 799,515 - GFF718 0.30 -0.9 799,546 + GFF718 0.33 -0.3 799,707 + GFF718 0.46 -0.7 799,708 - GFF718 0.46 -0.4 799,799 - GFF718 0.53 -1.9 799,897 - GFF718 0.61 -0.6 799,907 + GFF718 0.62 +1.0 799,907 + GFF718 0.62 -1.1 799,908 - GFF718 0.62 -0.9 799,908 - GFF718 0.62 -0.7 799,946 - GFF718 0.65 -0.5 799,949 + GFF718 0.65 -2.5 799,949 + GFF718 0.65 +0.7 799,950 - GFF718 0.65 -1.1 800,017 - GFF718 0.70 +0.2 800,034 - GFF718 0.72 -1.1 800,050 + GFF718 0.73 +0.5 800,051 - GFF718 0.73 -0.9 800,051 - GFF718 0.73 -0.7 800,051 - GFF718 0.73 -0.1 800,051 - GFF718 0.73 -0.1 800,094 + GFF718 0.76 -0.5 800,094 + GFF718 0.76 +0.3 800,095 - GFF718 0.77 -2.1 800,095 - GFF718 0.77 +0.4 800,096 + GFF718 0.77 -0.4 800,096 + GFF718 0.77 +0.6 800,096 + GFF718 0.77 -0.3 800,097 - GFF718 0.77 -0.6 800,097 - GFF718 0.77 -0.9 800,097 - GFF718 0.77 +0.0 800,193 - GFF718 0.84 -0.1 800,205 + GFF718 0.85 +0.5 800,205 + GFF718 0.85 -1.1 800,206 - GFF718 0.85 -0.2 800,209 + GFF718 0.86 -1.1 800,215 - GFF718 0.86 +1.2 800,224 - GFF718 0.87 -0.8 800,224 - GFF718 0.87 +0.1 800,224 - GFF718 0.87 -1.9 800,228 - GFF718 0.87 -1.7 800,228 - GFF718 0.87 -0.3 800,272 - -0.5 800,286 - +0.9 800,293 - -0.6 800,330 + +0.1 800,331 - -0.5 800,331 - -0.8 800,333 + -1.1 800,334 - -1.5 800,343 + -0.1 800,343 + -0.8 800,344 - -0.2 800,344 - -1.5 800,347 - +0.4 800,390 - +0.1 800,434 - -1.1 800,442 + -0.5 800,443 - +0.5 800,443 - -1.2 800,486 - GFF719 0.10 -1.1 800,488 + GFF719 0.11 +0.5 800,489 - GFF719 0.11 -2.0 800,489 - GFF719 0.11 -0.2 800,597 + GFF719 0.22 -0.6 800,597 + GFF719 0.22 +0.1 800,598 - GFF719 0.22 -1.6 800,716 - GFF719 0.35 +0.3 800,737 - GFF719 0.37 +1.4 800,749 + GFF719 0.38 -0.2 800,750 - GFF719 0.38 -0.5 800,750 - GFF719 0.38 -0.6 800,750 - GFF719 0.38 +1.5 800,750 - GFF719 0.38 -0.5 800,762 + GFF719 0.40 +0.5 800,763 - GFF719 0.40 -0.7 800,763 - GFF719 0.40 +0.2 800,763 - GFF719 0.40 -1.0 800,763 - GFF719 0.40 -1.1 800,869 - GFF719 0.51 +0.1 800,869 - GFF719 0.51 -1.5 800,908 - GFF719 0.55 +0.1 800,948 + GFF719 0.59 -0.1 800,949 - GFF719 0.59 -0.5 801,018 + GFF719 0.67 -0.1 801,045 + GFF719 0.70 -1.1 801,046 - GFF719 0.70 -0.2 801,046 - GFF719 0.70 -1.1 801,046 - GFF719 0.70 +1.1 801,046 - GFF719 0.70 -0.5 801,046 - GFF719 0.70 -0.1 801,101 - GFF719 0.75 +1.9 801,111 - GFF719 0.77 -0.7 801,133 + GFF719 0.79 -0.2 801,133 + GFF719 0.79 -0.4 801,134 - GFF719 0.79 +0.4 801,181 + GFF719 0.84 -0.4 801,182 - GFF719 0.84 -1.1 801,184 - GFF719 0.84 +0.9 801,184 - GFF719 0.84 -0.8 801,237 + GFF719 0.90 -0.7 801,237 + GFF719 0.90 -1.5 801,237 + GFF719 0.90 -1.7 801,238 - -1.5 801,307 - -0.1 801,351 + -0.5 801,351 + -1.0 801,371 + -0.4 801,371 + -1.0 801,372 - -1.9 801,372 - -0.7
Or see this region's nucleotide sequence