Strain Fitness in Methylophilus sp. DMC18 around GFF691

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF689 and GFF690 are separated by 7 nucleotidesGFF690 and GFF691 overlap by 8 nucleotidesGFF691 and GFF692 are separated by 19 nucleotides GFF689 - hypothetical protein, at 767,291 to 768,163 GFF689 GFF690 - hypothetical protein, at 768,171 to 769,058 GFF690 GFF691 - hypothetical protein, at 769,051 to 769,740 GFF691 GFF692 - hypothetical protein, at 769,760 to 770,824 GFF692 Position (kb) 769 770Strain fitness (log2 ratio) -3 -2 -1 0 1at 768.192 kb on - strandat 768.197 kb on + strandat 768.197 kb on + strandat 768.252 kb on + strandat 768.252 kb on + strandat 768.252 kb on + strandat 768.252 kb on + strandat 768.252 kb on + strandat 768.252 kb on + strandat 768.252 kb on + strandat 768.252 kb on + strandat 768.254 kb on + strandat 768.254 kb on + strandat 768.268 kb on + strand, within GFF690at 768.323 kb on + strand, within GFF690at 768.431 kb on - strand, within GFF690at 768.435 kb on + strand, within GFF690at 768.470 kb on - strand, within GFF690at 768.613 kb on + strand, within GFF690at 768.640 kb on + strand, within GFF690at 768.641 kb on - strand, within GFF690at 768.721 kb on + strand, within GFF690at 768.749 kb on + strand, within GFF690at 768.749 kb on + strand, within GFF690at 768.750 kb on - strand, within GFF690at 768.788 kb on + strand, within GFF690at 768.886 kb on + strand, within GFF690at 768.886 kb on + strand, within GFF690at 768.900 kb on + strand, within GFF690at 768.900 kb on + strand, within GFF690at 768.900 kb on + strand, within GFF690at 768.901 kb on - strand, within GFF690at 768.904 kb on - strand, within GFF690at 769.019 kb on + strandat 769.050 kb on + strandat 769.050 kb on + strandat 769.050 kb on + strandat 769.050 kb on + strandat 769.066 kb on + strandat 769.082 kb on + strandat 769.098 kb on + strandat 769.181 kb on + strand, within GFF691at 769.181 kb on + strand, within GFF691at 769.212 kb on + strand, within GFF691at 769.213 kb on - strand, within GFF691at 769.314 kb on - strand, within GFF691at 769.384 kb on + strand, within GFF691at 769.447 kb on - strand, within GFF691at 769.567 kb on + strand, within GFF691at 769.622 kb on + strand, within GFF691at 769.722 kb on + strandat 769.722 kb on + strandat 769.728 kb on - strandat 769.733 kb on + strandat 769.733 kb on + strandat 769.733 kb on + strandat 769.733 kb on + strandat 769.733 kb on + strandat 769.734 kb on - strandat 769.738 kb on + strandat 769.738 kb on + strandat 769.738 kb on + strandat 769.738 kb on + strandat 769.777 kb on + strandat 769.829 kb on + strandat 769.962 kb on + strand, within GFF692at 770.038 kb on + strand, within GFF692at 770.044 kb on + strand, within GFF692at 770.080 kb on + strand, within GFF692at 770.080 kb on + strand, within GFF692at 770.080 kb on + strand, within GFF692at 770.080 kb on + strand, within GFF692at 770.082 kb on + strand, within GFF692at 770.125 kb on + strand, within GFF692at 770.125 kb on + strand, within GFF692at 770.125 kb on + strand, within GFF692at 770.125 kb on + strand, within GFF692at 770.125 kb on + strand, within GFF692at 770.125 kb on + strand, within GFF692at 770.134 kb on + strand, within GFF692at 770.134 kb on + strand, within GFF692at 770.201 kb on + strand, within GFF692at 770.204 kb on + strand, within GFF692at 770.245 kb on + strand, within GFF692at 770.259 kb on + strand, within GFF692at 770.267 kb on + strand, within GFF692at 770.267 kb on + strand, within GFF692at 770.267 kb on + strand, within GFF692at 770.280 kb on + strand, within GFF692at 770.291 kb on + strand, within GFF692at 770.291 kb on + strand, within GFF692at 770.302 kb on + strand, within GFF692at 770.310 kb on + strand, within GFF692at 770.310 kb on + strand, within GFF692at 770.328 kb on + strand, within GFF692at 770.328 kb on + strand, within GFF692at 770.344 kb on + strand, within GFF692at 770.389 kb on + strand, within GFF692at 770.435 kb on + strand, within GFF692at 770.435 kb on + strand, within GFF692at 770.435 kb on + strand, within GFF692at 770.435 kb on + strand, within GFF692at 770.435 kb on + strand, within GFF692at 770.435 kb on + strand, within GFF692at 770.441 kb on + strand, within GFF692at 770.441 kb on + strand, within GFF692at 770.445 kb on + strand, within GFF692at 770.445 kb on + strand, within GFF692at 770.468 kb on + strand, within GFF692at 770.468 kb on + strand, within GFF692at 770.482 kb on + strand, within GFF692at 770.523 kb on + strand, within GFF692at 770.539 kb on + strand, within GFF692at 770.539 kb on + strand, within GFF692at 770.539 kb on + strand, within GFF692at 770.539 kb on + strand, within GFF692at 770.544 kb on + strand, within GFF692at 770.550 kb on + strand, within GFF692at 770.577 kb on + strand, within GFF692at 770.577 kb on + strand, within GFF692at 770.579 kb on + strand, within GFF692at 770.579 kb on + strand, within GFF692at 770.579 kb on + strand, within GFF692at 770.579 kb on + strand, within GFF692at 770.579 kb on + strand, within GFF692at 770.579 kb on + strand, within GFF692at 770.579 kb on + strand, within GFF692at 770.579 kb on + strand, within GFF692at 770.579 kb on + strand, within GFF692at 770.581 kb on + strand, within GFF692at 770.581 kb on + strand, within GFF692at 770.581 kb on + strand, within GFF692at 770.581 kb on + strand, within GFF692at 770.581 kb on + strand, within GFF692at 770.581 kb on + strand, within GFF692at 770.581 kb on + strand, within GFF692at 770.581 kb on + strand, within GFF692at 770.581 kb on + strand, within GFF692at 770.651 kb on + strand, within GFF692at 770.689 kb on + strand, within GFF692at 770.689 kb on + strand, within GFF692at 770.689 kb on + strand, within GFF692at 770.689 kb on + strand, within GFF692at 770.689 kb on + strand, within GFF692at 770.691 kb on + strand, within GFF692at 770.691 kb on + strand, within GFF692at 770.691 kb on + strand, within GFF692at 770.700 kb on + strand, within GFF692at 770.715 kb on + strand, within GFF692

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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768,192 - +0.5
768,197 + -2.3
768,197 + -1.1
768,252 + +0.1
768,252 + -0.1
768,252 + -0.1
768,252 + -0.1
768,252 + -2.1
768,252 + -0.7
768,252 + -1.1
768,252 + -1.1
768,254 + +0.1
768,254 + -0.9
768,268 + GFF690 0.11 -1.5
768,323 + GFF690 0.17 -1.7
768,431 - GFF690 0.29 -1.0
768,435 + GFF690 0.30 -1.7
768,470 - GFF690 0.34 -2.1
768,613 + GFF690 0.50 -1.1
768,640 + GFF690 0.53 -1.1
768,641 - GFF690 0.53 -1.1
768,721 + GFF690 0.62 -0.1
768,749 + GFF690 0.65 -0.5
768,749 + GFF690 0.65 -1.6
768,750 - GFF690 0.65 -2.3
768,788 + GFF690 0.69 -1.3
768,886 + GFF690 0.81 -1.9
768,886 + GFF690 0.81 -1.7
768,900 + GFF690 0.82 +0.1
768,900 + GFF690 0.82 -1.5
768,900 + GFF690 0.82 -1.1
768,901 - GFF690 0.82 -1.5
768,904 - GFF690 0.83 -0.1
769,019 + -1.5
769,050 + -1.5
769,050 + -1.0
769,050 + +0.1
769,050 + -0.9
769,066 + -2.6
769,082 + -1.9
769,098 + -1.5
769,181 + GFF691 0.19 -1.8
769,181 + GFF691 0.19 -1.7
769,212 + GFF691 0.23 -1.5
769,213 - GFF691 0.23 -0.5
769,314 - GFF691 0.38 -1.5
769,384 + GFF691 0.48 -1.1
769,447 - GFF691 0.57 -0.4
769,567 + GFF691 0.75 -2.3
769,622 + GFF691 0.83 -0.6
769,722 + -1.5
769,722 + -1.8
769,728 - -0.5
769,733 + +0.1
769,733 + -2.1
769,733 + -1.5
769,733 + +1.3
769,733 + -0.7
769,734 - -2.3
769,738 + -0.2
769,738 + -0.1
769,738 + -0.0
769,738 + -0.4
769,777 + -1.4
769,829 + -1.1
769,962 + GFF692 0.19 -0.7
770,038 + GFF692 0.26 -0.1
770,044 + GFF692 0.27 -0.1
770,080 + GFF692 0.30 +0.5
770,080 + GFF692 0.30 -0.9
770,080 + GFF692 0.30 -2.8
770,080 + GFF692 0.30 -1.1
770,082 + GFF692 0.30 +0.1
770,125 + GFF692 0.34 -1.1
770,125 + GFF692 0.34 +0.2
770,125 + GFF692 0.34 -1.8
770,125 + GFF692 0.34 -0.6
770,125 + GFF692 0.34 +0.7
770,125 + GFF692 0.34 -0.8
770,134 + GFF692 0.35 +0.1
770,134 + GFF692 0.35 -1.7
770,201 + GFF692 0.41 +0.2
770,204 + GFF692 0.42 -0.1
770,245 + GFF692 0.46 -0.1
770,259 + GFF692 0.47 -1.1
770,267 + GFF692 0.48 -0.6
770,267 + GFF692 0.48 +0.1
770,267 + GFF692 0.48 +0.1
770,280 + GFF692 0.49 -0.9
770,291 + GFF692 0.50 -0.5
770,291 + GFF692 0.50 -1.7
770,302 + GFF692 0.51 +0.2
770,310 + GFF692 0.52 +0.5
770,310 + GFF692 0.52 -0.1
770,328 + GFF692 0.53 -1.8
770,328 + GFF692 0.53 -0.7
770,344 + GFF692 0.55 -0.7
770,389 + GFF692 0.59 -1.9
770,435 + GFF692 0.63 +0.5
770,435 + GFF692 0.63 -1.7
770,435 + GFF692 0.63 -0.1
770,435 + GFF692 0.63 -2.4
770,435 + GFF692 0.63 -0.7
770,435 + GFF692 0.63 +0.9
770,441 + GFF692 0.64 -0.9
770,441 + GFF692 0.64 -0.7
770,445 + GFF692 0.64 -0.5
770,445 + GFF692 0.64 -0.5
770,468 + GFF692 0.66 -1.1
770,468 + GFF692 0.66 +0.9
770,482 + GFF692 0.68 -0.9
770,523 + GFF692 0.72 +0.4
770,539 + GFF692 0.73 -0.5
770,539 + GFF692 0.73 -0.1
770,539 + GFF692 0.73 -0.7
770,539 + GFF692 0.73 -2.6
770,544 + GFF692 0.74 -1.9
770,550 + GFF692 0.74 -1.5
770,577 + GFF692 0.77 -0.1
770,577 + GFF692 0.77 +0.5
770,579 + GFF692 0.77 -0.1
770,579 + GFF692 0.77 -0.9
770,579 + GFF692 0.77 -0.7
770,579 + GFF692 0.77 -1.6
770,579 + GFF692 0.77 +0.5
770,579 + GFF692 0.77 -1.3
770,579 + GFF692 0.77 -1.1
770,579 + GFF692 0.77 -1.1
770,579 + GFF692 0.77 -1.9
770,581 + GFF692 0.77 -0.7
770,581 + GFF692 0.77 -1.1
770,581 + GFF692 0.77 -1.7
770,581 + GFF692 0.77 -0.4
770,581 + GFF692 0.77 -0.5
770,581 + GFF692 0.77 -0.4
770,581 + GFF692 0.77 -1.0
770,581 + GFF692 0.77 -0.3
770,581 + GFF692 0.77 +0.0
770,651 + GFF692 0.84 -0.9
770,689 + GFF692 0.87 -0.1
770,689 + GFF692 0.87 -0.1
770,689 + GFF692 0.87 -1.3
770,689 + GFF692 0.87 +0.1
770,689 + GFF692 0.87 +0.5
770,691 + GFF692 0.87 +0.5
770,691 + GFF692 0.87 +0.0
770,691 + GFF692 0.87 -1.7
770,700 + GFF692 0.88 -0.5
770,715 + GFF692 0.90 -0.3

Or see this region's nucleotide sequence