Strain Fitness in Methylophilus sp. DMC18 around GFF680

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF679 and GFF680 are separated by 76 nucleotidesGFF680 and GFF681 are separated by 0 nucleotidesGFF681 and GFF682 are separated by 61 nucleotides GFF679 - Methenyltetrahydromethanopterin cyclohydrolase, at 756,395 to 757,390 GFF679 GFF680 - hypothetical protein, at 757,467 to 758,363 GFF680 GFF681 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase, at 758,364 to 759,233 GFF681 GFF682 - Putative pterin-4-alpha-carbinolamine dehydratase, at 759,295 to 759,669 GFF682 Position (kb) 757 758 759Strain fitness (log2 ratio) -3 -2 -1 0 1at 756.669 kb on + strand, within GFF679at 756.669 kb on + strand, within GFF679at 756.669 kb on + strand, within GFF679at 756.669 kb on + strand, within GFF679at 756.670 kb on - strand, within GFF679at 756.670 kb on - strand, within GFF679at 756.722 kb on + strand, within GFF679at 756.723 kb on - strand, within GFF679at 756.808 kb on + strand, within GFF679at 756.809 kb on - strand, within GFF679at 756.925 kb on + strand, within GFF679at 756.937 kb on + strand, within GFF679at 756.938 kb on - strand, within GFF679at 756.972 kb on + strand, within GFF679at 756.972 kb on + strand, within GFF679at 756.972 kb on + strand, within GFF679at 757.009 kb on + strand, within GFF679at 757.009 kb on + strand, within GFF679at 757.009 kb on + strand, within GFF679at 757.009 kb on + strand, within GFF679at 757.009 kb on + strand, within GFF679at 757.009 kb on + strand, within GFF679at 757.009 kb on + strand, within GFF679at 757.035 kb on + strand, within GFF679at 757.035 kb on + strand, within GFF679at 757.035 kb on + strand, within GFF679at 757.093 kb on + strand, within GFF679at 757.160 kb on - strand, within GFF679at 757.197 kb on + strand, within GFF679at 757.197 kb on + strand, within GFF679at 757.198 kb on - strand, within GFF679at 757.220 kb on + strand, within GFF679at 757.220 kb on + strand, within GFF679at 757.221 kb on - strand, within GFF679at 757.246 kb on + strand, within GFF679at 757.247 kb on - strand, within GFF679at 757.268 kb on + strand, within GFF679at 757.404 kb on + strandat 757.407 kb on + strandat 757.457 kb on + strandat 757.457 kb on + strandat 757.457 kb on + strandat 757.458 kb on - strandat 757.481 kb on + strandat 757.625 kb on + strand, within GFF680at 757.701 kb on - strand, within GFF680at 757.721 kb on + strand, within GFF680at 757.721 kb on + strand, within GFF680at 757.749 kb on + strand, within GFF680at 757.749 kb on + strand, within GFF680at 757.835 kb on + strand, within GFF680at 757.868 kb on + strand, within GFF680at 757.868 kb on + strand, within GFF680at 757.868 kb on + strand, within GFF680at 757.868 kb on + strand, within GFF680at 757.869 kb on - strand, within GFF680at 757.892 kb on + strand, within GFF680at 758.007 kb on + strand, within GFF680at 758.007 kb on + strand, within GFF680at 758.010 kb on + strand, within GFF680at 758.010 kb on + strand, within GFF680at 758.010 kb on + strand, within GFF680at 758.011 kb on - strand, within GFF680at 758.053 kb on - strand, within GFF680at 758.053 kb on - strand, within GFF680at 758.120 kb on + strand, within GFF680at 758.120 kb on + strand, within GFF680at 758.273 kb on + strand, within GFF680at 758.300 kb on + strandat 758.301 kb on - strandat 758.301 kb on - strandat 758.301 kb on - strandat 758.301 kb on - strandat 758.304 kb on - strandat 758.357 kb on + strandat 758.357 kb on + strandat 758.361 kb on + strandat 758.361 kb on + strandat 758.361 kb on + strandat 758.361 kb on + strandat 758.397 kb on + strandat 758.397 kb on + strandat 758.450 kb on + strandat 758.564 kb on + strand, within GFF681at 758.564 kb on + strand, within GFF681at 758.564 kb on + strand, within GFF681at 758.565 kb on - strand, within GFF681at 758.565 kb on - strand, within GFF681at 758.589 kb on + strand, within GFF681at 758.589 kb on + strand, within GFF681at 758.589 kb on + strand, within GFF681at 758.589 kb on + strand, within GFF681at 758.610 kb on - strand, within GFF681at 758.664 kb on + strand, within GFF681at 758.665 kb on - strand, within GFF681at 758.739 kb on + strand, within GFF681at 758.739 kb on + strand, within GFF681at 758.740 kb on - strand, within GFF681at 758.816 kb on + strand, within GFF681at 758.816 kb on + strand, within GFF681at 758.817 kb on - strand, within GFF681at 758.817 kb on - strand, within GFF681at 758.871 kb on + strand, within GFF681at 758.871 kb on + strand, within GFF681at 758.871 kb on + strand, within GFF681at 758.871 kb on + strand, within GFF681at 758.871 kb on + strand, within GFF681at 758.872 kb on - strand, within GFF681at 758.872 kb on - strand, within GFF681at 758.872 kb on - strand, within GFF681at 758.883 kb on + strand, within GFF681at 758.883 kb on + strand, within GFF681at 758.884 kb on - strand, within GFF681at 758.884 kb on - strand, within GFF681at 758.916 kb on + strand, within GFF681at 758.916 kb on + strand, within GFF681at 758.971 kb on - strand, within GFF681at 758.971 kb on - strand, within GFF681at 759.005 kb on + strand, within GFF681at 759.005 kb on + strand, within GFF681at 759.005 kb on + strand, within GFF681at 759.005 kb on + strand, within GFF681at 759.005 kb on + strand, within GFF681at 759.005 kb on + strand, within GFF681at 759.005 kb on + strand, within GFF681at 759.005 kb on + strand, within GFF681at 759.006 kb on - strand, within GFF681at 759.006 kb on - strand, within GFF681at 759.006 kb on - strand, within GFF681at 759.010 kb on + strand, within GFF681at 759.066 kb on + strand, within GFF681at 759.066 kb on + strand, within GFF681at 759.067 kb on - strand, within GFF681at 759.085 kb on + strand, within GFF681at 759.085 kb on + strand, within GFF681at 759.085 kb on + strand, within GFF681at 759.086 kb on - strand, within GFF681at 759.089 kb on + strand, within GFF681at 759.089 kb on + strand, within GFF681at 759.095 kb on + strand, within GFF681at 759.102 kb on + strand, within GFF681at 759.151 kb on + strandat 759.152 kb on - strandat 759.229 kb on + strandat 759.229 kb on + strandat 759.229 kb on + strandat 759.229 kb on + strandat 759.229 kb on + strandat 759.229 kb on + strandat 759.230 kb on - strandat 759.231 kb on + strandat 759.231 kb on + strandat 759.232 kb on - strandat 759.232 kb on - strandat 759.254 kb on - strandat 759.254 kb on - strandat 759.255 kb on + strandat 759.255 kb on + strandat 759.255 kb on + strandat 759.255 kb on + strandat 759.256 kb on - strandat 759.256 kb on - strandat 759.294 kb on + strandat 759.308 kb on + strandat 759.308 kb on + strandat 759.308 kb on + strandat 759.309 kb on - strandat 759.309 kb on - strandat 759.309 kb on - strandat 759.342 kb on + strand, within GFF682at 759.361 kb on + strand, within GFF682

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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756,669 + GFF679 0.28 -0.7
756,669 + GFF679 0.28 -0.5
756,669 + GFF679 0.28 -1.1
756,669 + GFF679 0.28 -1.5
756,670 - GFF679 0.28 -0.1
756,670 - GFF679 0.28 -0.5
756,722 + GFF679 0.33 +0.1
756,723 - GFF679 0.33 -1.1
756,808 + GFF679 0.41 -0.4
756,809 - GFF679 0.42 -1.5
756,925 + GFF679 0.53 +0.1
756,937 + GFF679 0.54 -0.7
756,938 - GFF679 0.55 -1.0
756,972 + GFF679 0.58 -0.7
756,972 + GFF679 0.58 +1.1
756,972 + GFF679 0.58 +0.1
757,009 + GFF679 0.62 -2.5
757,009 + GFF679 0.62 -1.1
757,009 + GFF679 0.62 -1.3
757,009 + GFF679 0.62 -0.1
757,009 + GFF679 0.62 -0.4
757,009 + GFF679 0.62 -1.1
757,009 + GFF679 0.62 -1.9
757,035 + GFF679 0.64 -1.5
757,035 + GFF679 0.64 -1.5
757,035 + GFF679 0.64 -0.4
757,093 + GFF679 0.70 +0.2
757,160 - GFF679 0.77 +0.1
757,197 + GFF679 0.81 -1.5
757,197 + GFF679 0.81 -0.9
757,198 - GFF679 0.81 -1.6
757,220 + GFF679 0.83 +0.5
757,220 + GFF679 0.83 -1.3
757,221 - GFF679 0.83 -0.3
757,246 + GFF679 0.85 -0.9
757,247 - GFF679 0.86 -0.9
757,268 + GFF679 0.88 +0.5
757,404 + -0.3
757,407 + +0.6
757,457 + -0.2
757,457 + -0.3
757,457 + +0.2
757,458 - +0.1
757,481 + -0.1
757,625 + GFF680 0.18 -1.1
757,701 - GFF680 0.26 -0.7
757,721 + GFF680 0.28 -1.5
757,721 + GFF680 0.28 -0.7
757,749 + GFF680 0.31 -2.1
757,749 + GFF680 0.31 -2.3
757,835 + GFF680 0.41 -0.9
757,868 + GFF680 0.45 -0.7
757,868 + GFF680 0.45 +0.5
757,868 + GFF680 0.45 -1.1
757,868 + GFF680 0.45 -2.1
757,869 - GFF680 0.45 -2.1
757,892 + GFF680 0.47 -2.5
758,007 + GFF680 0.60 -3.2
758,007 + GFF680 0.60 -1.1
758,010 + GFF680 0.61 -1.7
758,010 + GFF680 0.61 -1.7
758,010 + GFF680 0.61 -2.3
758,011 - GFF680 0.61 -1.7
758,053 - GFF680 0.65 -1.5
758,053 - GFF680 0.65 -1.9
758,120 + GFF680 0.73 -1.7
758,120 + GFF680 0.73 -1.5
758,273 + GFF680 0.90 -1.7
758,300 + -1.1
758,301 - -1.5
758,301 - -2.5
758,301 - -0.1
758,301 - -3.0
758,304 - -0.4
758,357 + -1.4
758,357 + -0.9
758,361 + -0.7
758,361 + +0.9
758,361 + -1.7
758,361 + -0.5
758,397 + +0.3
758,397 + -0.7
758,450 + -0.5
758,564 + GFF681 0.23 -1.6
758,564 + GFF681 0.23 -0.4
758,564 + GFF681 0.23 -0.5
758,565 - GFF681 0.23 -0.1
758,565 - GFF681 0.23 -2.1
758,589 + GFF681 0.26 -0.5
758,589 + GFF681 0.26 -0.3
758,589 + GFF681 0.26 -2.2
758,589 + GFF681 0.26 -1.0
758,610 - GFF681 0.28 -0.9
758,664 + GFF681 0.34 +0.8
758,665 - GFF681 0.35 -2.9
758,739 + GFF681 0.43 -0.3
758,739 + GFF681 0.43 -1.0
758,740 - GFF681 0.43 -1.0
758,816 + GFF681 0.52 +0.7
758,816 + GFF681 0.52 -0.9
758,817 - GFF681 0.52 -1.5
758,817 - GFF681 0.52 -0.5
758,871 + GFF681 0.58 -0.9
758,871 + GFF681 0.58 -0.5
758,871 + GFF681 0.58 +0.1
758,871 + GFF681 0.58 +0.9
758,871 + GFF681 0.58 -1.6
758,872 - GFF681 0.58 +0.6
758,872 - GFF681 0.58 -1.7
758,872 - GFF681 0.58 +0.7
758,883 + GFF681 0.60 -0.8
758,883 + GFF681 0.60 +0.1
758,884 - GFF681 0.60 -0.5
758,884 - GFF681 0.60 -0.6
758,916 + GFF681 0.63 -1.9
758,916 + GFF681 0.63 -0.8
758,971 - GFF681 0.70 +0.4
758,971 - GFF681 0.70 -0.1
759,005 + GFF681 0.74 +1.4
759,005 + GFF681 0.74 -0.3
759,005 + GFF681 0.74 +0.5
759,005 + GFF681 0.74 -0.5
759,005 + GFF681 0.74 +1.1
759,005 + GFF681 0.74 -0.8
759,005 + GFF681 0.74 +0.3
759,005 + GFF681 0.74 +0.2
759,006 - GFF681 0.74 -0.2
759,006 - GFF681 0.74 -1.1
759,006 - GFF681 0.74 -1.0
759,010 + GFF681 0.74 -0.4
759,066 + GFF681 0.81 -0.6
759,066 + GFF681 0.81 -0.8
759,067 - GFF681 0.81 -0.1
759,085 + GFF681 0.83 -0.3
759,085 + GFF681 0.83 +0.1
759,085 + GFF681 0.83 +0.5
759,086 - GFF681 0.83 -0.4
759,089 + GFF681 0.83 -0.8
759,089 + GFF681 0.83 -1.1
759,095 + GFF681 0.84 -0.1
759,102 + GFF681 0.85 -2.6
759,151 + -0.5
759,152 - +1.0
759,229 + -1.1
759,229 + -1.0
759,229 + -2.3
759,229 + -0.9
759,229 + -0.5
759,229 + -1.2
759,230 - -1.0
759,231 + -0.7
759,231 + -0.9
759,232 - -0.1
759,232 - -0.9
759,254 - -0.1
759,254 - -0.9
759,255 + +1.1
759,255 + -0.4
759,255 + -0.8
759,255 + +0.5
759,256 - +0.1
759,256 - -0.6
759,294 + -0.5
759,308 + -1.1
759,308 + +0.1
759,308 + -0.9
759,309 - -1.7
759,309 - -0.0
759,309 - -0.3
759,342 + GFF682 0.13 -2.3
759,361 + GFF682 0.18 +0.2

Or see this region's nucleotide sequence