Strain Fitness in Methylophilus sp. DMC18 around GFF674

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF672 and GFF673 are separated by 177 nucleotidesGFF673 and GFF674 are separated by 67 nucleotidesGFF674 and GFF675 are separated by 44 nucleotides GFF672 - Bicyclomycin resistance protein, at 747,805 to 748,962 GFF672 GFF673 - hypothetical protein, at 749,140 to 749,832 GFF673 GFF674 - Phosphoenolpyruvate synthase regulatory protein, at 749,900 to 750,703 GFF674 GFF675 - Phosphoenolpyruvate synthase, at 750,748 to 753,120 GFF675 Position (kb) 749 750 751Strain fitness (log2 ratio) -3 -2 -1 0 1at 748.941 kb on + strandat 748.992 kb on + strandat 748.992 kb on + strandat 748.992 kb on + strandat 748.993 kb on - strandat 749.014 kb on + strandat 749.024 kb on + strandat 749.027 kb on - strandat 749.058 kb on + strandat 749.080 kb on + strandat 749.080 kb on + strandat 749.080 kb on + strandat 749.080 kb on + strandat 749.101 kb on + strandat 749.102 kb on - strandat 749.116 kb on - strandat 749.125 kb on + strandat 749.125 kb on + strandat 749.125 kb on + strandat 749.139 kb on + strandat 749.139 kb on + strandat 749.176 kb on + strandat 749.177 kb on - strandat 749.177 kb on - strandat 749.268 kb on + strand, within GFF673at 749.283 kb on + strand, within GFF673at 749.303 kb on + strand, within GFF673at 749.486 kb on - strand, within GFF673at 749.531 kb on + strand, within GFF673at 749.531 kb on + strand, within GFF673at 749.531 kb on + strand, within GFF673at 749.531 kb on + strand, within GFF673at 749.531 kb on + strand, within GFF673at 749.532 kb on - strand, within GFF673at 749.532 kb on - strand, within GFF673at 749.532 kb on - strand, within GFF673at 749.532 kb on - strand, within GFF673at 749.552 kb on + strand, within GFF673at 749.553 kb on - strand, within GFF673at 749.615 kb on + strand, within GFF673at 749.638 kb on + strand, within GFF673at 749.638 kb on + strand, within GFF673at 749.639 kb on - strand, within GFF673at 749.639 kb on - strand, within GFF673at 749.639 kb on - strand, within GFF673at 749.656 kb on + strand, within GFF673at 749.657 kb on - strand, within GFF673at 749.712 kb on + strand, within GFF673at 749.712 kb on + strand, within GFF673at 749.713 kb on - strand, within GFF673at 749.713 kb on - strand, within GFF673at 749.760 kb on + strand, within GFF673at 749.760 kb on + strand, within GFF673at 749.761 kb on - strand, within GFF673at 749.761 kb on - strand, within GFF673at 749.796 kb on + strandat 749.796 kb on + strandat 749.796 kb on + strandat 749.796 kb on + strandat 749.830 kb on + strandat 749.830 kb on + strandat 749.830 kb on + strandat 749.830 kb on + strandat 749.831 kb on - strandat 749.846 kb on + strandat 749.847 kb on - strandat 749.868 kb on + strandat 749.881 kb on + strandat 749.901 kb on + strandat 749.902 kb on - strandat 749.987 kb on - strand, within GFF674at 750.043 kb on - strand, within GFF674at 750.043 kb on - strand, within GFF674at 750.197 kb on - strand, within GFF674at 750.217 kb on - strand, within GFF674at 750.289 kb on + strand, within GFF674at 750.290 kb on - strand, within GFF674at 750.365 kb on - strand, within GFF674at 750.365 kb on - strand, within GFF674at 750.365 kb on - strand, within GFF674at 750.365 kb on - strand, within GFF674at 750.367 kb on - strand, within GFF674at 750.367 kb on - strand, within GFF674at 750.367 kb on - strand, within GFF674at 750.367 kb on - strand, within GFF674at 750.367 kb on - strand, within GFF674at 750.367 kb on - strand, within GFF674at 750.401 kb on - strand, within GFF674at 750.446 kb on - strand, within GFF674at 750.468 kb on - strand, within GFF674at 750.475 kb on + strand, within GFF674at 750.476 kb on - strand, within GFF674at 750.503 kb on - strand, within GFF674at 750.503 kb on - strand, within GFF674at 750.512 kb on - strand, within GFF674at 750.567 kb on - strand, within GFF674at 750.567 kb on - strand, within GFF674at 750.567 kb on - strand, within GFF674at 750.680 kb on - strandat 750.683 kb on - strandat 750.687 kb on - strandat 750.687 kb on - strandat 750.736 kb on - strandat 750.736 kb on - strandat 750.750 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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748,941 + -1.1
748,992 + +0.5
748,992 + -0.9
748,992 + -1.7
748,993 - -0.1
749,014 + -0.1
749,024 + -0.9
749,027 - +0.2
749,058 + -0.0
749,080 + +0.9
749,080 + -0.3
749,080 + -0.7
749,080 + -1.4
749,101 + -0.1
749,102 - +0.1
749,116 - -0.1
749,125 + +0.1
749,125 + +0.2
749,125 + -0.4
749,139 + -0.4
749,139 + -0.7
749,176 + +0.3
749,177 - +0.0
749,177 - -2.3
749,268 + GFF673 0.18 -0.5
749,283 + GFF673 0.21 -0.1
749,303 + GFF673 0.24 -1.2
749,486 - GFF673 0.50 +1.2
749,531 + GFF673 0.56 -1.5
749,531 + GFF673 0.56 -0.9
749,531 + GFF673 0.56 -1.1
749,531 + GFF673 0.56 -0.5
749,531 + GFF673 0.56 -1.5
749,532 - GFF673 0.57 -1.9
749,532 - GFF673 0.57 -0.6
749,532 - GFF673 0.57 -1.5
749,532 - GFF673 0.57 -0.7
749,552 + GFF673 0.59 -0.1
749,553 - GFF673 0.60 +0.6
749,615 + GFF673 0.69 -0.7
749,638 + GFF673 0.72 -0.9
749,638 + GFF673 0.72 -0.1
749,639 - GFF673 0.72 -0.1
749,639 - GFF673 0.72 +0.5
749,639 - GFF673 0.72 -1.1
749,656 + GFF673 0.74 -1.0
749,657 - GFF673 0.75 +0.3
749,712 + GFF673 0.83 -0.7
749,712 + GFF673 0.83 -0.5
749,713 - GFF673 0.83 -0.5
749,713 - GFF673 0.83 -0.7
749,760 + GFF673 0.89 -1.1
749,760 + GFF673 0.89 -1.1
749,761 - GFF673 0.90 -1.2
749,761 - GFF673 0.90 -0.1
749,796 + -0.4
749,796 + -0.8
749,796 + -0.5
749,796 + -1.5
749,830 + -0.5
749,830 + +0.5
749,830 + -1.1
749,830 + -1.1
749,831 - +0.1
749,846 + -0.7
749,847 - -0.5
749,868 + -0.6
749,881 + -1.6
749,901 + -1.5
749,902 - -1.1
749,987 - GFF674 0.11 -1.1
750,043 - GFF674 0.18 -1.5
750,043 - GFF674 0.18 -0.1
750,197 - GFF674 0.37 -1.5
750,217 - GFF674 0.39 -2.5
750,289 + GFF674 0.48 -0.9
750,290 - GFF674 0.49 -1.9
750,365 - GFF674 0.58 -0.1
750,365 - GFF674 0.58 -0.1
750,365 - GFF674 0.58 -2.3
750,365 - GFF674 0.58 -1.1
750,367 - GFF674 0.58 -2.1
750,367 - GFF674 0.58 -0.7
750,367 - GFF674 0.58 -1.2
750,367 - GFF674 0.58 -1.7
750,367 - GFF674 0.58 -1.0
750,367 - GFF674 0.58 -2.3
750,401 - GFF674 0.62 -0.1
750,446 - GFF674 0.68 +0.5
750,468 - GFF674 0.71 -0.9
750,475 + GFF674 0.72 -1.7
750,476 - GFF674 0.72 -1.7
750,503 - GFF674 0.75 +0.5
750,503 - GFF674 0.75 -1.5
750,512 - GFF674 0.76 -2.2
750,567 - GFF674 0.83 -2.1
750,567 - GFF674 0.83 -0.9
750,567 - GFF674 0.83 -0.9
750,680 - -0.1
750,683 - -1.5
750,687 - -0.6
750,687 - -1.7
750,736 - -2.9
750,736 - -0.7
750,750 - -1.1

Or see this region's nucleotide sequence