Strain Fitness in Methylophilus sp. DMC18 around GFF671

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF669 and GFF670 are separated by 14 nucleotidesGFF670 and GFF671 are separated by 14 nucleotidesGFF671 and GFF672 are separated by 107 nucleotides GFF669 - Pyrroloquinoline-quinone synthase, at 745,441 to 746,202 GFF669 GFF670 - PqqA binding protein, at 746,217 to 746,501 GFF670 GFF671 - PqqA peptide cyclase, at 746,516 to 747,697 GFF671 GFF672 - Bicyclomycin resistance protein, at 747,805 to 748,962 GFF672 Position (kb) 746 747 748Strain fitness (log2 ratio) -2 -1 0 1at 745.524 kb on + strand, within GFF669at 745.524 kb on + strand, within GFF669at 745.524 kb on + strand, within GFF669at 745.524 kb on + strand, within GFF669at 745.524 kb on + strand, within GFF669at 745.524 kb on + strand, within GFF669at 745.524 kb on + strand, within GFF669at 745.524 kb on + strand, within GFF669at 745.525 kb on - strand, within GFF669at 745.528 kb on + strand, within GFF669at 745.528 kb on + strand, within GFF669at 745.528 kb on + strand, within GFF669at 745.528 kb on + strand, within GFF669at 745.528 kb on + strand, within GFF669at 745.542 kb on + strand, within GFF669at 745.542 kb on + strand, within GFF669at 745.552 kb on + strand, within GFF669at 745.552 kb on + strand, within GFF669at 745.606 kb on + strand, within GFF669at 745.606 kb on + strand, within GFF669at 745.650 kb on + strand, within GFF669at 745.826 kb on + strand, within GFF669at 745.834 kb on + strand, within GFF669at 745.834 kb on + strand, within GFF669at 745.834 kb on + strand, within GFF669at 745.945 kb on + strand, within GFF669at 745.971 kb on + strand, within GFF669at 746.031 kb on + strand, within GFF669at 746.142 kb on + strandat 746.142 kb on + strandat 746.142 kb on + strandat 746.170 kb on + strandat 746.170 kb on + strandat 746.170 kb on + strandat 746.172 kb on + strandat 746.190 kb on + strandat 746.247 kb on + strand, within GFF670at 746.247 kb on + strand, within GFF670at 746.247 kb on + strand, within GFF670at 746.248 kb on - strand, within GFF670at 746.298 kb on + strand, within GFF670at 746.509 kb on + strandat 746.568 kb on + strandat 746.591 kb on + strandat 746.647 kb on + strand, within GFF671at 746.758 kb on + strand, within GFF671at 746.798 kb on + strand, within GFF671at 746.812 kb on + strand, within GFF671at 746.875 kb on + strand, within GFF671at 747.213 kb on + strand, within GFF671at 747.233 kb on + strand, within GFF671at 747.309 kb on + strand, within GFF671at 747.600 kb on + strandat 747.647 kb on + strandat 747.648 kb on - strandat 747.651 kb on + strandat 747.651 kb on + strandat 747.652 kb on - strandat 747.652 kb on - strandat 747.670 kb on + strandat 747.670 kb on + strandat 747.670 kb on + strandat 747.670 kb on + strandat 747.715 kb on + strandat 747.715 kb on + strandat 747.715 kb on + strandat 747.715 kb on + strandat 747.715 kb on + strandat 747.715 kb on + strandat 747.716 kb on - strandat 747.762 kb on + strandat 747.762 kb on + strandat 747.762 kb on + strandat 747.841 kb on + strandat 747.841 kb on + strandat 747.841 kb on + strandat 747.914 kb on + strandat 747.914 kb on + strandat 747.914 kb on + strandat 747.914 kb on + strandat 747.914 kb on + strandat 747.914 kb on + strandat 747.914 kb on + strandat 747.914 kb on + strandat 747.915 kb on - strandat 747.915 kb on - strandat 747.915 kb on - strandat 747.916 kb on + strandat 747.916 kb on + strandat 747.916 kb on + strandat 747.916 kb on + strandat 747.916 kb on + strandat 747.916 kb on + strandat 747.916 kb on + strandat 747.917 kb on - strandat 747.917 kb on - strandat 747.917 kb on - strandat 747.928 kb on + strand, within GFF672at 747.928 kb on + strand, within GFF672at 747.928 kb on + strand, within GFF672at 747.929 kb on - strand, within GFF672at 747.929 kb on - strand, within GFF672at 747.944 kb on + strand, within GFF672at 747.944 kb on + strand, within GFF672at 747.944 kb on + strand, within GFF672at 747.944 kb on + strand, within GFF672at 747.945 kb on - strand, within GFF672at 747.981 kb on + strand, within GFF672at 748.173 kb on - strand, within GFF672at 748.223 kb on + strand, within GFF672at 748.268 kb on + strand, within GFF672at 748.268 kb on + strand, within GFF672at 748.268 kb on + strand, within GFF672at 748.269 kb on - strand, within GFF672at 748.270 kb on + strand, within GFF672at 748.270 kb on + strand, within GFF672at 748.270 kb on + strand, within GFF672at 748.270 kb on + strand, within GFF672at 748.270 kb on + strand, within GFF672at 748.369 kb on + strand, within GFF672at 748.383 kb on + strand, within GFF672at 748.384 kb on - strand, within GFF672at 748.384 kb on - strand, within GFF672at 748.447 kb on + strand, within GFF672at 748.447 kb on + strand, within GFF672at 748.447 kb on + strand, within GFF672at 748.447 kb on + strand, within GFF672at 748.448 kb on - strand, within GFF672at 748.494 kb on + strand, within GFF672at 748.566 kb on + strand, within GFF672at 748.566 kb on + strand, within GFF672at 748.567 kb on - strand, within GFF672at 748.567 kb on - strand, within GFF672at 748.634 kb on + strand, within GFF672at 748.634 kb on + strand, within GFF672at 748.634 kb on + strand, within GFF672at 748.691 kb on + strand, within GFF672

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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745,524 + GFF669 0.11 -0.1
745,524 + GFF669 0.11 -1.1
745,524 + GFF669 0.11 +0.5
745,524 + GFF669 0.11 +0.9
745,524 + GFF669 0.11 +0.9
745,524 + GFF669 0.11 -0.7
745,524 + GFF669 0.11 -1.5
745,524 + GFF669 0.11 -1.1
745,525 - GFF669 0.11 +0.5
745,528 + GFF669 0.11 -0.1
745,528 + GFF669 0.11 -1.7
745,528 + GFF669 0.11 -0.1
745,528 + GFF669 0.11 -0.6
745,528 + GFF669 0.11 -0.7
745,542 + GFF669 0.13 -1.5
745,542 + GFF669 0.13 -0.5
745,552 + GFF669 0.15 +0.1
745,552 + GFF669 0.15 +0.4
745,606 + GFF669 0.22 -1.5
745,606 + GFF669 0.22 -1.9
745,650 + GFF669 0.27 -1.9
745,826 + GFF669 0.51 -0.1
745,834 + GFF669 0.52 -0.3
745,834 + GFF669 0.52 -1.9
745,834 + GFF669 0.52 -2.1
745,945 + GFF669 0.66 -0.1
745,971 + GFF669 0.70 -1.1
746,031 + GFF669 0.77 +0.6
746,142 + -1.6
746,142 + -0.5
746,142 + +0.0
746,170 + -0.4
746,170 + -1.5
746,170 + -0.1
746,172 + -0.5
746,190 + -0.5
746,247 + GFF670 0.11 +0.1
746,247 + GFF670 0.11 -1.9
746,247 + GFF670 0.11 -1.1
746,248 - GFF670 0.11 -1.1
746,298 + GFF670 0.28 -0.5
746,509 + -1.1
746,568 + -1.1
746,591 + +0.1
746,647 + GFF671 0.11 +0.9
746,758 + GFF671 0.20 -0.9
746,798 + GFF671 0.24 -0.1
746,812 + GFF671 0.25 -1.1
746,875 + GFF671 0.30 -1.9
747,213 + GFF671 0.59 +0.5
747,233 + GFF671 0.61 -1.9
747,309 + GFF671 0.67 -0.7
747,600 + -0.7
747,647 + -1.3
747,648 - +0.3
747,651 + -0.5
747,651 + -1.9
747,652 - -1.1
747,652 - -1.7
747,670 + -0.7
747,670 + +0.1
747,670 + -0.7
747,670 + -2.3
747,715 + -0.8
747,715 + -0.6
747,715 + -0.7
747,715 + +0.9
747,715 + -0.5
747,715 + -0.3
747,716 - -1.5
747,762 + -1.0
747,762 + +1.2
747,762 + -0.4
747,841 + -0.4
747,841 + -1.1
747,841 + -0.9
747,914 + -1.1
747,914 + -0.5
747,914 + -1.3
747,914 + -2.1
747,914 + -1.5
747,914 + -1.0
747,914 + -0.1
747,914 + -1.1
747,915 - -1.1
747,915 - -1.5
747,915 - -0.5
747,916 + -1.9
747,916 + -0.4
747,916 + +0.1
747,916 + -0.4
747,916 + +1.5
747,916 + +0.2
747,916 + -1.0
747,917 - +0.2
747,917 - -0.9
747,917 - +0.1
747,928 + GFF672 0.11 -0.1
747,928 + GFF672 0.11 +0.5
747,928 + GFF672 0.11 -1.9
747,929 - GFF672 0.11 -1.5
747,929 - GFF672 0.11 -2.6
747,944 + GFF672 0.12 -0.5
747,944 + GFF672 0.12 -1.7
747,944 + GFF672 0.12 -2.4
747,944 + GFF672 0.12 +0.4
747,945 - GFF672 0.12 +0.5
747,981 + GFF672 0.15 -0.4
748,173 - GFF672 0.32 -1.3
748,223 + GFF672 0.36 -0.5
748,268 + GFF672 0.40 -0.6
748,268 + GFF672 0.40 -1.5
748,268 + GFF672 0.40 +0.1
748,269 - GFF672 0.40 -0.1
748,270 + GFF672 0.40 +0.0
748,270 + GFF672 0.40 +0.5
748,270 + GFF672 0.40 -1.2
748,270 + GFF672 0.40 -1.5
748,270 + GFF672 0.40 -0.4
748,369 + GFF672 0.49 -0.5
748,383 + GFF672 0.50 -1.5
748,384 - GFF672 0.50 -0.5
748,384 - GFF672 0.50 -1.1
748,447 + GFF672 0.55 -1.1
748,447 + GFF672 0.55 -0.8
748,447 + GFF672 0.55 -0.7
748,447 + GFF672 0.55 +0.5
748,448 - GFF672 0.56 -1.1
748,494 + GFF672 0.59 -1.6
748,566 + GFF672 0.66 -0.7
748,566 + GFF672 0.66 -0.1
748,567 - GFF672 0.66 -1.1
748,567 - GFF672 0.66 -0.9
748,634 + GFF672 0.72 -0.7
748,634 + GFF672 0.72 -0.3
748,634 + GFF672 0.72 -0.7
748,691 + GFF672 0.77 -0.5

Or see this region's nucleotide sequence