Strain Fitness in Methylophilus sp. DMC18 around GFF651

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF649 and GFF650 are separated by 103 nucleotidesGFF650 and GFF651 are separated by 34 nucleotidesGFF651 and GFF652 are separated by 63 nucleotides GFF649 - Pyrimidine/purine nucleoside phosphorylase, at 721,379 to 721,690 GFF649 GFF650 - hypothetical protein, at 721,794 to 722,288 GFF650 GFF651 - hypothetical protein, at 722,323 to 722,445 GFF651 GFF652 - Aspartate-semialdehyde dehydrogenase, at 722,509 to 723,621 GFF652 Position (kb) 722 723Strain fitness (log2 ratio) -2 -1 0 1at 721.327 kb on + strandat 721.327 kb on + strandat 721.327 kb on + strandat 721.328 kb on - strandat 721.329 kb on + strandat 721.329 kb on + strandat 721.329 kb on + strandat 721.329 kb on + strandat 721.329 kb on + strandat 721.329 kb on + strandat 721.329 kb on + strandat 721.329 kb on + strandat 721.353 kb on + strandat 721.353 kb on + strandat 721.353 kb on + strandat 721.362 kb on + strandat 721.404 kb on + strandat 721.417 kb on + strand, within GFF649at 721.417 kb on + strand, within GFF649at 721.417 kb on + strand, within GFF649at 721.417 kb on + strand, within GFF649at 721.417 kb on + strand, within GFF649at 721.417 kb on + strand, within GFF649at 721.417 kb on + strand, within GFF649at 721.417 kb on + strand, within GFF649at 721.417 kb on + strand, within GFF649at 721.424 kb on + strand, within GFF649at 721.424 kb on + strand, within GFF649at 721.424 kb on + strand, within GFF649at 721.480 kb on + strand, within GFF649at 721.480 kb on + strand, within GFF649at 721.491 kb on + strand, within GFF649at 721.504 kb on + strand, within GFF649at 721.504 kb on + strand, within GFF649at 721.516 kb on + strand, within GFF649at 721.516 kb on + strand, within GFF649at 721.519 kb on + strand, within GFF649at 721.594 kb on + strand, within GFF649at 721.598 kb on + strand, within GFF649at 721.598 kb on + strand, within GFF649at 721.598 kb on + strand, within GFF649at 721.598 kb on + strand, within GFF649at 721.598 kb on + strand, within GFF649at 721.598 kb on + strand, within GFF649at 721.598 kb on + strand, within GFF649at 721.656 kb on + strand, within GFF649at 721.656 kb on + strand, within GFF649at 721.665 kb on + strandat 721.670 kb on + strandat 721.670 kb on + strandat 721.670 kb on + strandat 721.670 kb on + strandat 721.670 kb on + strandat 721.670 kb on + strandat 721.688 kb on + strandat 721.731 kb on + strandat 721.734 kb on + strandat 721.734 kb on + strandat 721.740 kb on + strandat 721.740 kb on + strandat 721.741 kb on - strandat 721.799 kb on + strandat 721.808 kb on + strandat 721.811 kb on + strandat 721.811 kb on + strandat 721.811 kb on + strandat 721.811 kb on + strandat 721.811 kb on + strandat 721.832 kb on + strandat 721.832 kb on + strandat 721.889 kb on + strand, within GFF650at 721.889 kb on + strand, within GFF650at 721.916 kb on + strand, within GFF650at 721.997 kb on + strand, within GFF650at 721.997 kb on + strand, within GFF650at 722.138 kb on + strand, within GFF650at 722.138 kb on + strand, within GFF650at 722.246 kb on + strandat 722.246 kb on + strandat 722.246 kb on + strandat 722.249 kb on + strandat 722.295 kb on + strandat 722.348 kb on + strand, within GFF651at 722.348 kb on + strand, within GFF651at 722.376 kb on + strand, within GFF651at 722.379 kb on + strand, within GFF651at 722.379 kb on + strand, within GFF651at 722.443 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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721,327 + -0.1
721,327 + -0.6
721,327 + -0.2
721,328 - -1.1
721,329 + -1.2
721,329 + +0.2
721,329 + -0.5
721,329 + -0.9
721,329 + +0.1
721,329 + -1.0
721,329 + -0.7
721,329 + +0.6
721,353 + -0.2
721,353 + -1.1
721,353 + -0.9
721,362 + -0.6
721,404 + -0.7
721,417 + GFF649 0.12 -0.4
721,417 + GFF649 0.12 -1.8
721,417 + GFF649 0.12 -1.3
721,417 + GFF649 0.12 -1.8
721,417 + GFF649 0.12 -1.5
721,417 + GFF649 0.12 -0.2
721,417 + GFF649 0.12 -1.3
721,417 + GFF649 0.12 -0.8
721,417 + GFF649 0.12 -1.1
721,424 + GFF649 0.14 -1.5
721,424 + GFF649 0.14 -0.9
721,424 + GFF649 0.14 -0.7
721,480 + GFF649 0.32 -0.6
721,480 + GFF649 0.32 -1.1
721,491 + GFF649 0.36 -1.2
721,504 + GFF649 0.40 -0.8
721,504 + GFF649 0.40 -1.6
721,516 + GFF649 0.44 +0.2
721,516 + GFF649 0.44 -0.4
721,519 + GFF649 0.45 -0.2
721,594 + GFF649 0.69 -1.6
721,598 + GFF649 0.70 -0.9
721,598 + GFF649 0.70 +0.1
721,598 + GFF649 0.70 -0.7
721,598 + GFF649 0.70 -0.9
721,598 + GFF649 0.70 -0.3
721,598 + GFF649 0.70 -0.5
721,598 + GFF649 0.70 -0.2
721,656 + GFF649 0.89 -0.7
721,656 + GFF649 0.89 +0.1
721,665 + -0.6
721,670 + -0.8
721,670 + -0.5
721,670 + -0.5
721,670 + -1.1
721,670 + +0.5
721,670 + -1.9
721,688 + -1.1
721,731 + -0.1
721,734 + -0.1
721,734 + +0.3
721,740 + -0.3
721,740 + -1.2
721,741 - -1.1
721,799 + -0.3
721,808 + +0.4
721,811 + -0.8
721,811 + -1.6
721,811 + -0.5
721,811 + -0.8
721,811 + -0.6
721,832 + -0.6
721,832 + -1.9
721,889 + GFF650 0.19 +0.7
721,889 + GFF650 0.19 -0.0
721,916 + GFF650 0.25 -0.5
721,997 + GFF650 0.41 -1.0
721,997 + GFF650 0.41 +0.5
722,138 + GFF650 0.69 -1.1
722,138 + GFF650 0.69 -0.4
722,246 + -0.2
722,246 + -0.9
722,246 + -0.9
722,249 + -1.1
722,295 + -2.1
722,348 + GFF651 0.20 -0.5
722,348 + GFF651 0.20 -1.1
722,376 + GFF651 0.43 +0.1
722,379 + GFF651 0.46 -1.1
722,379 + GFF651 0.46 -1.9
722,443 + -0.3

Or see this region's nucleotide sequence