Strain Fitness in Methylophilus sp. DMC18 around GFF580

Experiment: D-Glucose and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF579 and GFF580 overlap by 4 nucleotidesGFF580 and GFF581 are separated by 55 nucleotides GFF579 - Acetolactate synthase isozyme 3 large subunit, at 637,364 to 639,166 GFF579 GFF580 - dTDP-glucose 4,6-dehydratase, at 639,163 to 640,212 GFF580 GFF581 - 3-dehydroquinate synthase, at 640,268 to 641,380 GFF581 Position (kb) 639 640 641Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 638.189 kb on - strand, within GFF579at 638.284 kb on - strand, within GFF579at 638.304 kb on - strand, within GFF579at 638.322 kb on - strand, within GFF579at 638.328 kb on - strand, within GFF579at 638.328 kb on - strand, within GFF579at 638.328 kb on - strand, within GFF579at 638.328 kb on - strand, within GFF579at 638.363 kb on - strand, within GFF579at 638.370 kb on - strand, within GFF579at 638.370 kb on - strand, within GFF579at 638.370 kb on - strand, within GFF579at 638.370 kb on - strand, within GFF579at 638.375 kb on - strand, within GFF579at 638.391 kb on + strand, within GFF579at 638.392 kb on - strand, within GFF579at 638.392 kb on - strand, within GFF579at 638.392 kb on - strand, within GFF579at 638.394 kb on - strand, within GFF579at 638.414 kb on - strand, within GFF579at 638.450 kb on - strand, within GFF579at 638.480 kb on - strand, within GFF579at 638.480 kb on - strand, within GFF579at 638.567 kb on - strand, within GFF579at 638.577 kb on - strand, within GFF579at 638.713 kb on - strand, within GFF579at 638.713 kb on - strand, within GFF579at 638.713 kb on - strand, within GFF579at 638.744 kb on - strand, within GFF579at 638.763 kb on - strand, within GFF579at 638.801 kb on - strand, within GFF579at 638.958 kb on - strand, within GFF579at 638.958 kb on - strand, within GFF579at 638.958 kb on - strand, within GFF579at 638.958 kb on - strand, within GFF579at 638.958 kb on - strand, within GFF579at 638.992 kb on - strandat 639.078 kb on - strandat 639.151 kb on - strandat 639.209 kb on - strandat 639.268 kb on - strand, within GFF580at 639.279 kb on - strand, within GFF580at 639.279 kb on - strand, within GFF580at 639.395 kb on - strand, within GFF580at 639.465 kb on - strand, within GFF580at 639.465 kb on - strand, within GFF580at 639.465 kb on - strand, within GFF580at 639.465 kb on - strand, within GFF580at 639.467 kb on - strand, within GFF580at 639.467 kb on - strand, within GFF580at 639.467 kb on - strand, within GFF580at 639.467 kb on - strand, within GFF580at 639.467 kb on - strand, within GFF580at 639.467 kb on - strand, within GFF580at 639.471 kb on - strand, within GFF580at 639.485 kb on - strand, within GFF580at 639.493 kb on - strand, within GFF580at 639.604 kb on - strand, within GFF580at 639.607 kb on - strand, within GFF580at 639.675 kb on - strand, within GFF580at 639.818 kb on - strand, within GFF580at 639.829 kb on - strand, within GFF580at 639.835 kb on - strand, within GFF580at 639.852 kb on + strand, within GFF580at 639.852 kb on + strand, within GFF580at 639.852 kb on + strand, within GFF580at 639.853 kb on - strand, within GFF580at 639.853 kb on - strand, within GFF580at 639.853 kb on - strand, within GFF580at 639.853 kb on - strand, within GFF580at 639.966 kb on + strand, within GFF580at 639.967 kb on - strand, within GFF580at 640.028 kb on - strand, within GFF580at 640.028 kb on - strand, within GFF580at 640.028 kb on - strand, within GFF580at 640.172 kb on - strandat 640.172 kb on - strandat 640.172 kb on - strandat 640.175 kb on - strandat 640.175 kb on - strandat 640.175 kb on - strandat 640.177 kb on - strandat 640.183 kb on - strandat 640.183 kb on - strandat 640.237 kb on + strandat 640.237 kb on + strandat 640.237 kb on + strandat 640.238 kb on - strandat 640.238 kb on - strandat 640.238 kb on - strandat 640.238 kb on - strandat 640.269 kb on + strandat 640.269 kb on + strandat 640.269 kb on + strandat 640.269 kb on + strandat 640.269 kb on + strandat 640.270 kb on - strandat 640.270 kb on - strandat 640.270 kb on - strandat 640.270 kb on - strandat 640.270 kb on - strandat 640.270 kb on - strandat 640.270 kb on - strandat 640.270 kb on - strandat 640.270 kb on - strandat 640.270 kb on - strandat 640.270 kb on - strandat 640.270 kb on - strandat 640.270 kb on - strandat 640.270 kb on - strandat 640.277 kb on - strandat 640.277 kb on - strandat 640.277 kb on - strandat 640.277 kb on - strandat 640.305 kb on - strandat 640.305 kb on - strandat 640.305 kb on - strandat 640.305 kb on - strandat 640.305 kb on - strandat 640.305 kb on - strandat 640.312 kb on + strandat 640.313 kb on - strandat 640.317 kb on - strandat 640.327 kb on - strandat 640.334 kb on + strandat 640.334 kb on + strandat 640.335 kb on - strandat 640.335 kb on - strandat 640.335 kb on - strandat 640.335 kb on - strandat 640.335 kb on - strandat 640.377 kb on - strandat 640.404 kb on - strand, within GFF581at 640.407 kb on - strand, within GFF581at 640.428 kb on - strand, within GFF581at 640.428 kb on - strand, within GFF581at 640.428 kb on - strand, within GFF581at 640.428 kb on - strand, within GFF581at 640.430 kb on - strand, within GFF581at 640.430 kb on - strand, within GFF581at 640.470 kb on - strand, within GFF581at 640.481 kb on - strand, within GFF581at 640.481 kb on - strand, within GFF581at 640.481 kb on - strand, within GFF581at 640.485 kb on - strand, within GFF581at 640.497 kb on - strand, within GFF581at 640.528 kb on + strand, within GFF581at 640.528 kb on + strand, within GFF581at 640.529 kb on - strand, within GFF581at 640.529 kb on - strand, within GFF581at 640.574 kb on + strand, within GFF581at 640.575 kb on - strand, within GFF581at 640.604 kb on - strand, within GFF581at 640.611 kb on - strand, within GFF581at 640.611 kb on - strand, within GFF581at 640.616 kb on - strand, within GFF581at 640.644 kb on - strand, within GFF581at 640.684 kb on + strand, within GFF581at 640.685 kb on - strand, within GFF581at 640.685 kb on - strand, within GFF581at 640.685 kb on - strand, within GFF581at 640.692 kb on + strand, within GFF581at 640.693 kb on - strand, within GFF581at 640.693 kb on - strand, within GFF581at 640.693 kb on - strand, within GFF581at 640.693 kb on - strand, within GFF581at 640.693 kb on - strand, within GFF581at 640.693 kb on - strand, within GFF581at 640.693 kb on - strand, within GFF581at 640.693 kb on - strand, within GFF581at 640.701 kb on - strand, within GFF581at 640.704 kb on - strand, within GFF581at 640.704 kb on - strand, within GFF581at 640.817 kb on - strand, within GFF581at 640.817 kb on - strand, within GFF581at 640.820 kb on + strand, within GFF581at 640.821 kb on - strand, within GFF581at 640.821 kb on - strand, within GFF581at 640.821 kb on - strand, within GFF581at 640.825 kb on - strand, within GFF581at 640.825 kb on - strand, within GFF581at 640.842 kb on + strand, within GFF581at 640.843 kb on - strand, within GFF581at 640.843 kb on - strand, within GFF581at 640.843 kb on - strand, within GFF581at 640.843 kb on - strand, within GFF581at 640.843 kb on - strand, within GFF581at 640.843 kb on - strand, within GFF581at 640.875 kb on + strand, within GFF581at 640.875 kb on + strand, within GFF581at 640.876 kb on - strand, within GFF581at 640.876 kb on - strand, within GFF581at 640.876 kb on - strand, within GFF581at 640.876 kb on - strand, within GFF581at 640.878 kb on - strand, within GFF581at 640.878 kb on - strand, within GFF581at 640.878 kb on - strand, within GFF581at 640.878 kb on - strand, within GFF581at 640.878 kb on - strand, within GFF581at 640.878 kb on - strand, within GFF581at 640.887 kb on - strand, within GFF581at 640.904 kb on + strand, within GFF581at 640.905 kb on - strand, within GFF581at 640.935 kb on - strand, within GFF581at 640.935 kb on - strand, within GFF581at 640.935 kb on - strand, within GFF581at 640.935 kb on - strand, within GFF581at 640.935 kb on - strand, within GFF581at 640.935 kb on - strand, within GFF581at 640.962 kb on - strand, within GFF581at 640.962 kb on - strand, within GFF581at 640.962 kb on - strand, within GFF581at 640.962 kb on - strand, within GFF581at 640.965 kb on - strand, within GFF581at 640.965 kb on - strand, within GFF581at 641.007 kb on - strand, within GFF581at 641.007 kb on - strand, within GFF581at 641.007 kb on - strand, within GFF581at 641.007 kb on - strand, within GFF581at 641.007 kb on - strand, within GFF581at 641.007 kb on - strand, within GFF581at 641.007 kb on - strand, within GFF581at 641.044 kb on + strand, within GFF581at 641.045 kb on - strand, within GFF581at 641.045 kb on - strand, within GFF581at 641.046 kb on + strand, within GFF581at 641.047 kb on - strand, within GFF581at 641.047 kb on - strand, within GFF581at 641.047 kb on - strand, within GFF581at 641.047 kb on - strand, within GFF581at 641.047 kb on - strand, within GFF581at 641.090 kb on - strand, within GFF581at 641.090 kb on - strand, within GFF581at 641.105 kb on + strand, within GFF581at 641.105 kb on + strand, within GFF581at 641.105 kb on + strand, within GFF581at 641.105 kb on + strand, within GFF581at 641.105 kb on + strand, within GFF581at 641.106 kb on - strand, within GFF581at 641.106 kb on - strand, within GFF581at 641.106 kb on - strand, within GFF581at 641.106 kb on - strand, within GFF581at 641.151 kb on - strand, within GFF581at 641.198 kb on - strand, within GFF581at 641.198 kb on - strand, within GFF581at 641.198 kb on - strand, within GFF581

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
remove
638,189 - GFF579 0.46 -1.1
638,284 - GFF579 0.51 -1.1
638,304 - GFF579 0.52 -0.1
638,322 - GFF579 0.53 +0.4
638,328 - GFF579 0.53 -0.1
638,328 - GFF579 0.53 -0.5
638,328 - GFF579 0.53 -1.5
638,328 - GFF579 0.53 -0.4
638,363 - GFF579 0.55 -2.6
638,370 - GFF579 0.56 +0.1
638,370 - GFF579 0.56 +0.1
638,370 - GFF579 0.56 +0.1
638,370 - GFF579 0.56 +0.1
638,375 - GFF579 0.56 -1.7
638,391 + GFF579 0.57 -0.7
638,392 - GFF579 0.57 -0.3
638,392 - GFF579 0.57 -0.9
638,392 - GFF579 0.57 -0.1
638,394 - GFF579 0.57 -0.1
638,414 - GFF579 0.58 -1.1
638,450 - GFF579 0.60 -0.1
638,480 - GFF579 0.62 -0.4
638,480 - GFF579 0.62 -1.0
638,567 - GFF579 0.67 -0.5
638,577 - GFF579 0.67 +0.1
638,713 - GFF579 0.75 -1.4
638,713 - GFF579 0.75 +0.0
638,713 - GFF579 0.75 -1.1
638,744 - GFF579 0.77 -0.1
638,763 - GFF579 0.78 -0.1
638,801 - GFF579 0.80 +0.4
638,958 - GFF579 0.88 +0.9
638,958 - GFF579 0.88 -1.4
638,958 - GFF579 0.88 -0.7
638,958 - GFF579 0.88 -0.4
638,958 - GFF579 0.88 +0.6
638,992 - -1.8
639,078 - -0.4
639,151 - -0.1
639,209 - +0.1
639,268 - GFF580 0.10 -1.1
639,279 - GFF580 0.11 +0.6
639,279 - GFF580 0.11 -1.4
639,395 - GFF580 0.22 -0.1
639,465 - GFF580 0.29 -1.4
639,465 - GFF580 0.29 -4.4
639,465 - GFF580 0.29 -0.9
639,465 - GFF580 0.29 +0.6
639,467 - GFF580 0.29 -0.5
639,467 - GFF580 0.29 -0.1
639,467 - GFF580 0.29 +0.6
639,467 - GFF580 0.29 -1.7
639,467 - GFF580 0.29 -0.1
639,467 - GFF580 0.29 -1.3
639,471 - GFF580 0.29 -0.5
639,485 - GFF580 0.31 -1.1
639,493 - GFF580 0.31 -1.1
639,604 - GFF580 0.42 -1.4
639,607 - GFF580 0.42 -1.4
639,675 - GFF580 0.49 -1.1
639,818 - GFF580 0.62 +0.5
639,829 - GFF580 0.63 +0.1
639,835 - GFF580 0.64 -0.9
639,852 + GFF580 0.66 -0.1
639,852 + GFF580 0.66 +0.1
639,852 + GFF580 0.66 -1.1
639,853 - GFF580 0.66 +0.5
639,853 - GFF580 0.66 -0.9
639,853 - GFF580 0.66 -1.9
639,853 - GFF580 0.66 +0.1
639,966 + GFF580 0.76 -1.1
639,967 - GFF580 0.77 -1.3
640,028 - GFF580 0.82 +0.1
640,028 - GFF580 0.82 -1.1
640,028 - GFF580 0.82 -1.1
640,172 - +1.1
640,172 - -0.4
640,172 - -0.1
640,175 - -1.4
640,175 - -0.5
640,175 - -0.1
640,177 - -0.5
640,183 - -1.9
640,183 - -1.1
640,237 + -1.1
640,237 + -0.1
640,237 + +0.5
640,238 - -0.4
640,238 - -0.4
640,238 - -3.1
640,238 - -0.4
640,269 + +0.2
640,269 + -0.8
640,269 + -0.2
640,269 + -0.6
640,269 + -0.7
640,270 - +0.1
640,270 - -0.6
640,270 - -0.6
640,270 - -0.8
640,270 - -2.7
640,270 - -0.1
640,270 - -2.7
640,270 - -0.3
640,270 - -0.5
640,270 - -0.5
640,270 - -1.5
640,270 - +0.4
640,270 - -0.3
640,270 - -1.2
640,277 - -0.4
640,277 - -0.6
640,277 - +0.2
640,277 - -1.1
640,305 - +0.9
640,305 - -0.8
640,305 - -0.7
640,305 - -1.5
640,305 - -0.5
640,305 - +0.3
640,312 + -2.7
640,313 - -0.8
640,317 - -0.5
640,327 - +1.2
640,334 + -0.1
640,334 + -1.5
640,335 - -0.1
640,335 - -0.1
640,335 - -1.1
640,335 - -0.7
640,335 - +0.3
640,377 - -0.1
640,404 - GFF581 0.12 -0.9
640,407 - GFF581 0.12 +0.9
640,428 - GFF581 0.14 -0.1
640,428 - GFF581 0.14 -2.1
640,428 - GFF581 0.14 -0.1
640,428 - GFF581 0.14 -0.7
640,430 - GFF581 0.15 -0.4
640,430 - GFF581 0.15 -0.4
640,470 - GFF581 0.18 -1.1
640,481 - GFF581 0.19 -0.2
640,481 - GFF581 0.19 -1.5
640,481 - GFF581 0.19 +0.3
640,485 - GFF581 0.19 -0.1
640,497 - GFF581 0.21 -1.7
640,528 + GFF581 0.23 -1.5
640,528 + GFF581 0.23 +1.5
640,529 - GFF581 0.23 +0.9
640,529 - GFF581 0.23 +0.5
640,574 + GFF581 0.27 +1.7
640,575 - GFF581 0.28 -0.9
640,604 - GFF581 0.30 -0.7
640,611 - GFF581 0.31 -0.9
640,611 - GFF581 0.31 -1.2
640,616 - GFF581 0.31 +0.2
640,644 - GFF581 0.34 +0.3
640,684 + GFF581 0.37 -1.1
640,685 - GFF581 0.37 -0.8
640,685 - GFF581 0.37 -0.0
640,685 - GFF581 0.37 +0.0
640,692 + GFF581 0.38 -0.5
640,693 - GFF581 0.38 +0.5
640,693 - GFF581 0.38 -0.1
640,693 - GFF581 0.38 -0.4
640,693 - GFF581 0.38 +0.5
640,693 - GFF581 0.38 -1.5
640,693 - GFF581 0.38 +0.6
640,693 - GFF581 0.38 -0.9
640,693 - GFF581 0.38 -0.5
640,701 - GFF581 0.39 -0.1
640,704 - GFF581 0.39 -0.5
640,704 - GFF581 0.39 -1.1
640,817 - GFF581 0.49 -1.2
640,817 - GFF581 0.49 -0.1
640,820 + GFF581 0.50 +0.1
640,821 - GFF581 0.50 -0.1
640,821 - GFF581 0.50 +0.1
640,821 - GFF581 0.50 +0.9
640,825 - GFF581 0.50 +0.1
640,825 - GFF581 0.50 -1.1
640,842 + GFF581 0.52 -1.1
640,843 - GFF581 0.52 -1.5
640,843 - GFF581 0.52 -1.0
640,843 - GFF581 0.52 -0.6
640,843 - GFF581 0.52 +0.1
640,843 - GFF581 0.52 +0.3
640,843 - GFF581 0.52 +1.4
640,875 + GFF581 0.55 -0.3
640,875 + GFF581 0.55 -1.5
640,876 - GFF581 0.55 -0.1
640,876 - GFF581 0.55 +0.5
640,876 - GFF581 0.55 -0.5
640,876 - GFF581 0.55 -1.1
640,878 - GFF581 0.55 -1.5
640,878 - GFF581 0.55 +0.1
640,878 - GFF581 0.55 -0.4
640,878 - GFF581 0.55 -1.1
640,878 - GFF581 0.55 -0.1
640,878 - GFF581 0.55 +0.5
640,887 - GFF581 0.56 +0.0
640,904 + GFF581 0.57 -0.1
640,905 - GFF581 0.57 -0.7
640,935 - GFF581 0.60 +0.2
640,935 - GFF581 0.60 +0.0
640,935 - GFF581 0.60 +0.5
640,935 - GFF581 0.60 +0.1
640,935 - GFF581 0.60 +0.5
640,935 - GFF581 0.60 -0.7
640,962 - GFF581 0.62 +0.2
640,962 - GFF581 0.62 -0.2
640,962 - GFF581 0.62 -1.1
640,962 - GFF581 0.62 -1.5
640,965 - GFF581 0.63 -0.1
640,965 - GFF581 0.63 -0.1
641,007 - GFF581 0.66 -0.5
641,007 - GFF581 0.66 -1.0
641,007 - GFF581 0.66 -0.7
641,007 - GFF581 0.66 -0.9
641,007 - GFF581 0.66 -0.9
641,007 - GFF581 0.66 -2.5
641,007 - GFF581 0.66 +0.1
641,044 + GFF581 0.70 -0.7
641,045 - GFF581 0.70 -0.5
641,045 - GFF581 0.70 -0.8
641,046 + GFF581 0.70 -1.1
641,047 - GFF581 0.70 -0.2
641,047 - GFF581 0.70 -0.7
641,047 - GFF581 0.70 -0.7
641,047 - GFF581 0.70 +0.0
641,047 - GFF581 0.70 +0.5
641,090 - GFF581 0.74 -0.0
641,090 - GFF581 0.74 -0.4
641,105 + GFF581 0.75 +0.5
641,105 + GFF581 0.75 +0.9
641,105 + GFF581 0.75 -0.1
641,105 + GFF581 0.75 -0.7
641,105 + GFF581 0.75 -1.9
641,106 - GFF581 0.75 -0.7
641,106 - GFF581 0.75 -0.0
641,106 - GFF581 0.75 -0.9
641,106 - GFF581 0.75 -1.5
641,151 - GFF581 0.79 -0.6
641,198 - GFF581 0.84 +0.2
641,198 - GFF581 0.84 -0.7
641,198 - GFF581 0.84 +0.2

Or see this region's nucleotide sequence