Strain Fitness in Methylophilus sp. DMC18 around GFF535

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF533 and GFF534 are separated by 27 nucleotidesGFF534 and GFF535 are separated by 1 nucleotidesGFF535 and GFF536 are separated by 0 nucleotides GFF533 - hypothetical protein, at 590,624 to 592,312 GFF533 GFF534 - hypothetical protein, at 592,340 to 592,825 GFF534 GFF535 - hypothetical protein, at 592,827 to 593,159 GFF535 GFF536 - hypothetical protein, at 593,160 to 594,296 GFF536 Position (kb) 592 593 594Strain fitness (log2 ratio) -2 -1 0 1at 591.875 kb on + strand, within GFF533at 591.875 kb on + strand, within GFF533at 591.875 kb on + strand, within GFF533at 591.875 kb on + strand, within GFF533at 591.875 kb on + strand, within GFF533at 591.886 kb on + strand, within GFF533at 591.958 kb on + strand, within GFF533at 591.958 kb on + strand, within GFF533at 591.958 kb on + strand, within GFF533at 591.958 kb on + strand, within GFF533at 591.958 kb on + strand, within GFF533at 591.959 kb on - strand, within GFF533at 591.959 kb on - strand, within GFF533at 591.961 kb on + strand, within GFF533at 592.075 kb on + strand, within GFF533at 592.076 kb on - strand, within GFF533at 592.076 kb on - strand, within GFF533at 592.078 kb on + strand, within GFF533at 592.078 kb on + strand, within GFF533at 592.079 kb on - strand, within GFF533at 592.090 kb on + strand, within GFF533at 592.150 kb on + strandat 592.151 kb on - strandat 592.151 kb on - strandat 592.211 kb on + strandat 592.242 kb on + strandat 592.243 kb on - strandat 592.310 kb on + strandat 592.311 kb on - strandat 592.366 kb on + strandat 592.383 kb on + strandat 592.439 kb on + strand, within GFF534at 592.452 kb on + strand, within GFF534at 592.452 kb on + strand, within GFF534at 592.453 kb on - strand, within GFF534at 592.495 kb on + strand, within GFF534at 592.514 kb on + strand, within GFF534at 592.516 kb on + strand, within GFF534at 592.516 kb on + strand, within GFF534at 592.517 kb on - strand, within GFF534at 592.610 kb on + strand, within GFF534at 592.610 kb on + strand, within GFF534at 592.611 kb on - strand, within GFF534at 592.611 kb on - strand, within GFF534at 592.616 kb on + strand, within GFF534at 592.616 kb on + strand, within GFF534at 592.617 kb on - strand, within GFF534at 592.617 kb on - strand, within GFF534at 592.617 kb on - strand, within GFF534at 592.657 kb on + strand, within GFF534at 592.658 kb on - strand, within GFF534at 592.658 kb on - strand, within GFF534at 592.658 kb on - strand, within GFF534at 592.660 kb on + strand, within GFF534at 592.660 kb on + strand, within GFF534at 592.663 kb on + strand, within GFF534at 592.663 kb on + strand, within GFF534at 592.796 kb on + strandat 592.826 kb on + strandat 592.826 kb on + strandat 592.826 kb on + strandat 592.827 kb on - strandat 592.827 kb on - strandat 592.845 kb on - strandat 592.847 kb on + strandat 592.847 kb on + strandat 592.847 kb on + strandat 592.848 kb on - strandat 592.848 kb on - strandat 592.851 kb on + strandat 592.851 kb on + strandat 592.852 kb on - strandat 592.852 kb on - strandat 592.852 kb on - strandat 592.938 kb on + strand, within GFF535at 592.938 kb on + strand, within GFF535at 592.938 kb on + strand, within GFF535at 592.938 kb on + strand, within GFF535at 592.938 kb on + strand, within GFF535at 592.938 kb on + strand, within GFF535at 592.938 kb on + strand, within GFF535at 592.938 kb on + strand, within GFF535at 592.939 kb on - strand, within GFF535at 592.939 kb on - strand, within GFF535at 592.939 kb on - strand, within GFF535at 592.939 kb on - strand, within GFF535at 593.072 kb on + strand, within GFF535at 593.072 kb on + strand, within GFF535at 593.082 kb on + strand, within GFF535at 593.128 kb on + strandat 593.128 kb on + strandat 593.128 kb on + strandat 593.157 kb on + strandat 593.158 kb on - strandat 593.158 kb on - strandat 593.158 kb on - strandat 593.198 kb on + strandat 593.369 kb on + strand, within GFF536at 593.369 kb on + strand, within GFF536at 593.386 kb on + strand, within GFF536at 593.422 kb on + strand, within GFF536at 593.423 kb on - strand, within GFF536at 593.430 kb on + strand, within GFF536at 593.431 kb on - strand, within GFF536at 593.431 kb on - strand, within GFF536at 593.606 kb on + strand, within GFF536at 593.609 kb on + strand, within GFF536at 593.609 kb on + strand, within GFF536at 593.610 kb on - strand, within GFF536at 593.659 kb on + strand, within GFF536at 593.659 kb on + strand, within GFF536at 593.660 kb on - strand, within GFF536at 593.660 kb on - strand, within GFF536at 593.820 kb on + strand, within GFF536at 593.821 kb on - strand, within GFF536at 593.821 kb on - strand, within GFF536at 593.872 kb on + strand, within GFF536at 593.932 kb on + strand, within GFF536at 593.932 kb on + strand, within GFF536at 593.933 kb on - strand, within GFF536at 594.049 kb on + strand, within GFF536at 594.106 kb on + strand, within GFF536

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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591,875 + GFF533 0.74 -0.2
591,875 + GFF533 0.74 +0.3
591,875 + GFF533 0.74 -0.4
591,875 + GFF533 0.74 -0.1
591,875 + GFF533 0.74 +0.3
591,886 + GFF533 0.75 -0.5
591,958 + GFF533 0.79 +1.4
591,958 + GFF533 0.79 -0.7
591,958 + GFF533 0.79 +0.9
591,958 + GFF533 0.79 -0.9
591,958 + GFF533 0.79 -0.8
591,959 - GFF533 0.79 -1.1
591,959 - GFF533 0.79 -1.7
591,961 + GFF533 0.79 -1.3
592,075 + GFF533 0.86 -0.6
592,076 - GFF533 0.86 -1.4
592,076 - GFF533 0.86 +1.1
592,078 + GFF533 0.86 +0.9
592,078 + GFF533 0.86 +0.2
592,079 - GFF533 0.86 +0.9
592,090 + GFF533 0.87 -1.4
592,150 + -0.4
592,151 - -0.7
592,151 - +0.5
592,211 + +0.9
592,242 + -0.1
592,243 - -0.6
592,310 + +0.5
592,311 - +0.2
592,366 + +1.5
592,383 + +0.6
592,439 + GFF534 0.20 +0.5
592,452 + GFF534 0.23 -0.1
592,452 + GFF534 0.23 -0.9
592,453 - GFF534 0.23 +1.2
592,495 + GFF534 0.32 -0.3
592,514 + GFF534 0.36 +0.1
592,516 + GFF534 0.36 -1.8
592,516 + GFF534 0.36 -1.4
592,517 - GFF534 0.36 -1.2
592,610 + GFF534 0.56 -1.9
592,610 + GFF534 0.56 -2.6
592,611 - GFF534 0.56 -1.3
592,611 - GFF534 0.56 -0.4
592,616 + GFF534 0.57 +0.3
592,616 + GFF534 0.57 -0.7
592,617 - GFF534 0.57 -1.1
592,617 - GFF534 0.57 -0.7
592,617 - GFF534 0.57 -1.0
592,657 + GFF534 0.65 -0.6
592,658 - GFF534 0.65 -0.2
592,658 - GFF534 0.65 -1.1
592,658 - GFF534 0.65 -0.1
592,660 + GFF534 0.66 -2.4
592,660 + GFF534 0.66 +0.6
592,663 + GFF534 0.66 -0.9
592,663 + GFF534 0.66 -0.9
592,796 + -0.1
592,826 + -0.7
592,826 + -1.3
592,826 + -0.8
592,827 - -0.3
592,827 - -0.1
592,845 - -0.7
592,847 + -0.3
592,847 + -1.0
592,847 + +0.6
592,848 - -1.1
592,848 - +0.9
592,851 + -0.1
592,851 + -0.3
592,852 - -0.9
592,852 - +0.2
592,852 - -0.5
592,938 + GFF535 0.33 +0.2
592,938 + GFF535 0.33 -1.4
592,938 + GFF535 0.33 -1.8
592,938 + GFF535 0.33 +1.1
592,938 + GFF535 0.33 -1.1
592,938 + GFF535 0.33 -1.0
592,938 + GFF535 0.33 -1.1
592,938 + GFF535 0.33 -0.7
592,939 - GFF535 0.34 -0.1
592,939 - GFF535 0.34 -0.4
592,939 - GFF535 0.34 -0.9
592,939 - GFF535 0.34 -1.8
593,072 + GFF535 0.74 -1.9
593,072 + GFF535 0.74 +0.5
593,082 + GFF535 0.77 -0.9
593,128 + -1.1
593,128 + +0.0
593,128 + -1.0
593,157 + -0.5
593,158 - -1.8
593,158 - -1.7
593,158 - -0.8
593,198 + +0.9
593,369 + GFF536 0.18 -1.4
593,369 + GFF536 0.18 -0.8
593,386 + GFF536 0.20 -0.2
593,422 + GFF536 0.23 -0.5
593,423 - GFF536 0.23 -0.1
593,430 + GFF536 0.24 -0.4
593,431 - GFF536 0.24 -1.1
593,431 - GFF536 0.24 -1.7
593,606 + GFF536 0.39 -0.4
593,609 + GFF536 0.39 -0.1
593,609 + GFF536 0.39 -0.5
593,610 - GFF536 0.40 -0.1
593,659 + GFF536 0.44 -0.6
593,659 + GFF536 0.44 -0.4
593,660 - GFF536 0.44 -0.4
593,660 - GFF536 0.44 +0.7
593,820 + GFF536 0.58 -0.7
593,821 - GFF536 0.58 -1.4
593,821 - GFF536 0.58 +0.7
593,872 + GFF536 0.63 -0.7
593,932 + GFF536 0.68 -0.5
593,932 + GFF536 0.68 -1.4
593,933 - GFF536 0.68 -0.9
594,049 + GFF536 0.78 -1.4
594,106 + GFF536 0.83 -2.4

Or see this region's nucleotide sequence