Strain Fitness in Methylophilus sp. DMC18 around GFF480

Experiment: D-Glucose and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF478 and GFF479 are separated by 9 nucleotidesGFF479 and GFF480 overlap by 4 nucleotidesGFF480 and GFF481 are separated by 225 nucleotides GFF478 - Succinate dehydrogenase iron-sulfur subunit, at 528,397 to 529,143 GFF478 GFF479 - FAD assembly factor SdhE, at 529,153 to 529,443 GFF479 GFF480 - hypothetical protein, at 529,440 to 530,570 GFF480 GFF481 - 3-hydroxybenzoate--CoA/4-hydroxybenzoate--CoA ligase, at 530,796 to 532,445 GFF481 Position (kb) 529 530 531Strain fitness (log2 ratio) -3 -2 -1 0 1at 528.445 kb on + strandat 528.446 kb on - strandat 528.446 kb on - strandat 528.447 kb on + strandat 528.447 kb on + strandat 528.448 kb on - strandat 528.457 kb on + strandat 528.491 kb on + strand, within GFF478at 528.537 kb on + strand, within GFF478at 528.585 kb on + strand, within GFF478at 528.648 kb on - strand, within GFF478at 528.696 kb on + strand, within GFF478at 528.697 kb on - strand, within GFF478at 528.714 kb on + strand, within GFF478at 528.714 kb on + strand, within GFF478at 528.718 kb on + strand, within GFF478at 528.718 kb on + strand, within GFF478at 528.718 kb on + strand, within GFF478at 528.718 kb on + strand, within GFF478at 528.718 kb on + strand, within GFF478at 528.718 kb on + strand, within GFF478at 528.719 kb on - strand, within GFF478at 528.719 kb on - strand, within GFF478at 528.719 kb on - strand, within GFF478at 528.719 kb on - strand, within GFF478at 528.719 kb on - strand, within GFF478at 528.737 kb on - strand, within GFF478at 528.814 kb on + strand, within GFF478at 528.814 kb on + strand, within GFF478at 528.814 kb on + strand, within GFF478at 528.814 kb on + strand, within GFF478at 528.814 kb on + strand, within GFF478at 528.815 kb on - strand, within GFF478at 528.815 kb on - strand, within GFF478at 528.815 kb on - strand, within GFF478at 528.815 kb on - strand, within GFF478at 528.815 kb on - strand, within GFF478at 528.815 kb on - strand, within GFF478at 528.840 kb on + strand, within GFF478at 528.840 kb on + strand, within GFF478at 528.841 kb on - strand, within GFF478at 528.841 kb on - strand, within GFF478at 528.841 kb on - strand, within GFF478at 528.841 kb on - strand, within GFF478at 528.911 kb on - strand, within GFF478at 528.985 kb on + strand, within GFF478at 528.985 kb on + strand, within GFF478at 529.012 kb on - strand, within GFF478at 529.062 kb on + strand, within GFF478at 529.129 kb on - strandat 529.139 kb on + strandat 529.139 kb on + strandat 529.139 kb on + strandat 529.140 kb on - strandat 529.152 kb on + strandat 529.172 kb on + strandat 529.239 kb on - strand, within GFF479at 529.353 kb on - strand, within GFF479at 529.510 kb on + strandat 529.510 kb on + strandat 529.510 kb on + strandat 529.510 kb on + strandat 529.510 kb on + strandat 529.511 kb on - strandat 529.518 kb on + strandat 529.518 kb on + strandat 529.518 kb on + strandat 529.536 kb on + strandat 529.536 kb on + strandat 529.537 kb on - strandat 529.557 kb on + strand, within GFF480at 529.619 kb on + strand, within GFF480at 529.762 kb on - strand, within GFF480at 529.762 kb on - strand, within GFF480at 529.802 kb on + strand, within GFF480at 529.802 kb on + strand, within GFF480at 529.884 kb on - strand, within GFF480at 529.884 kb on - strand, within GFF480at 529.884 kb on - strand, within GFF480at 529.884 kb on - strand, within GFF480at 529.904 kb on - strand, within GFF480at 529.904 kb on - strand, within GFF480at 529.926 kb on - strand, within GFF480at 529.959 kb on + strand, within GFF480at 529.959 kb on + strand, within GFF480at 529.959 kb on + strand, within GFF480at 529.960 kb on - strand, within GFF480at 529.960 kb on - strand, within GFF480at 530.004 kb on - strand, within GFF480at 530.041 kb on + strand, within GFF480at 530.041 kb on + strand, within GFF480at 530.042 kb on - strand, within GFF480at 530.055 kb on + strand, within GFF480at 530.056 kb on - strand, within GFF480at 530.056 kb on - strand, within GFF480at 530.096 kb on + strand, within GFF480at 530.220 kb on + strand, within GFF480at 530.285 kb on + strand, within GFF480at 530.285 kb on + strand, within GFF480at 530.297 kb on + strand, within GFF480at 530.533 kb on + strandat 530.533 kb on + strandat 530.533 kb on + strandat 530.536 kb on + strandat 530.625 kb on + strandat 530.625 kb on + strandat 530.742 kb on + strandat 530.742 kb on + strandat 530.742 kb on + strandat 530.742 kb on + strandat 530.744 kb on + strandat 530.772 kb on + strandat 530.772 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
remove
528,445 + -1.4
528,446 - -2.0
528,446 - -0.1
528,447 + -2.9
528,447 + -0.7
528,448 - +0.0
528,457 + -1.1
528,491 + GFF478 0.13 -1.4
528,537 + GFF478 0.19 +1.2
528,585 + GFF478 0.25 -1.9
528,648 - GFF478 0.34 -2.6
528,696 + GFF478 0.40 -1.4
528,697 - GFF478 0.40 -0.9
528,714 + GFF478 0.42 -1.8
528,714 + GFF478 0.42 -1.3
528,718 + GFF478 0.43 -1.9
528,718 + GFF478 0.43 -2.3
528,718 + GFF478 0.43 -1.0
528,718 + GFF478 0.43 -0.4
528,718 + GFF478 0.43 -1.1
528,718 + GFF478 0.43 -3.0
528,719 - GFF478 0.43 -0.4
528,719 - GFF478 0.43 -1.4
528,719 - GFF478 0.43 -1.4
528,719 - GFF478 0.43 -1.1
528,719 - GFF478 0.43 -0.8
528,737 - GFF478 0.46 -0.7
528,814 + GFF478 0.56 -2.1
528,814 + GFF478 0.56 -1.9
528,814 + GFF478 0.56 -0.7
528,814 + GFF478 0.56 -2.9
528,814 + GFF478 0.56 -2.1
528,815 - GFF478 0.56 -1.7
528,815 - GFF478 0.56 -0.5
528,815 - GFF478 0.56 -1.0
528,815 - GFF478 0.56 -2.1
528,815 - GFF478 0.56 -0.3
528,815 - GFF478 0.56 -0.1
528,840 + GFF478 0.59 -0.7
528,840 + GFF478 0.59 -0.4
528,841 - GFF478 0.59 -2.0
528,841 - GFF478 0.59 -0.1
528,841 - GFF478 0.59 -1.7
528,841 - GFF478 0.59 -2.0
528,911 - GFF478 0.69 -0.1
528,985 + GFF478 0.79 -0.9
528,985 + GFF478 0.79 -1.4
529,012 - GFF478 0.82 -0.1
529,062 + GFF478 0.89 -1.9
529,129 - +0.3
529,139 + +0.5
529,139 + -0.5
529,139 + -0.4
529,140 - -1.4
529,152 + -0.5
529,172 + -0.4
529,239 - GFF479 0.30 -0.1
529,353 - GFF479 0.69 -1.1
529,510 + -1.7
529,510 + -0.4
529,510 + -1.8
529,510 + -2.8
529,510 + +0.9
529,511 - -1.3
529,518 + -0.7
529,518 + -3.2
529,518 + +0.1
529,536 + +0.3
529,536 + -1.1
529,537 - -2.1
529,557 + GFF480 0.10 -1.9
529,619 + GFF480 0.16 -2.0
529,762 - GFF480 0.28 +0.2
529,762 - GFF480 0.28 -2.2
529,802 + GFF480 0.32 -1.9
529,802 + GFF480 0.32 -0.5
529,884 - GFF480 0.39 -0.1
529,884 - GFF480 0.39 -1.9
529,884 - GFF480 0.39 -1.9
529,884 - GFF480 0.39 -1.8
529,904 - GFF480 0.41 -1.7
529,904 - GFF480 0.41 -1.7
529,926 - GFF480 0.43 -1.1
529,959 + GFF480 0.46 -1.7
529,959 + GFF480 0.46 -2.1
529,959 + GFF480 0.46 +0.5
529,960 - GFF480 0.46 -1.1
529,960 - GFF480 0.46 -2.0
530,004 - GFF480 0.50 -1.7
530,041 + GFF480 0.53 -1.0
530,041 + GFF480 0.53 -1.1
530,042 - GFF480 0.53 -1.1
530,055 + GFF480 0.54 -0.7
530,056 - GFF480 0.54 -1.6
530,056 - GFF480 0.54 -1.2
530,096 + GFF480 0.58 -1.3
530,220 + GFF480 0.69 -1.7
530,285 + GFF480 0.75 -1.9
530,285 + GFF480 0.75 -0.1
530,297 + GFF480 0.76 -1.1
530,533 + -1.0
530,533 + -0.1
530,533 + -0.1
530,536 + -2.0
530,625 + +0.3
530,625 + -0.9
530,742 + +0.1
530,742 + +0.5
530,742 + -0.2
530,742 + -1.1
530,744 + -0.6
530,772 + +0.6
530,772 + +0.5

Or see this region's nucleotide sequence