Strain Fitness in Methylophilus sp. DMC18 around GFF478

Experiment: D-Glucose and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF477 and GFF478 are separated by 1 nucleotidesGFF478 and GFF479 are separated by 9 nucleotidesGFF479 and GFF480 overlap by 4 nucleotides GFF477 - Succinate dehydrogenase flavoprotein subunit, at 526,608 to 528,395 GFF477 GFF478 - Succinate dehydrogenase iron-sulfur subunit, at 528,397 to 529,143 GFF478 GFF479 - FAD assembly factor SdhE, at 529,153 to 529,443 GFF479 GFF480 - hypothetical protein, at 529,440 to 530,570 GFF480 Position (kb) 528 529 530Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 527.463 kb on + strand, within GFF477at 527.556 kb on - strand, within GFF477at 527.568 kb on + strand, within GFF477at 527.578 kb on + strand, within GFF477at 527.578 kb on + strand, within GFF477at 527.578 kb on + strand, within GFF477at 527.579 kb on - strand, within GFF477at 527.579 kb on - strand, within GFF477at 527.587 kb on + strand, within GFF477at 527.588 kb on - strand, within GFF477at 527.653 kb on + strand, within GFF477at 527.653 kb on + strand, within GFF477at 527.697 kb on + strand, within GFF477at 527.697 kb on + strand, within GFF477at 527.697 kb on + strand, within GFF477at 527.697 kb on + strand, within GFF477at 527.698 kb on - strand, within GFF477at 527.698 kb on - strand, within GFF477at 527.698 kb on - strand, within GFF477at 527.698 kb on - strand, within GFF477at 527.743 kb on + strand, within GFF477at 527.743 kb on + strand, within GFF477at 527.743 kb on + strand, within GFF477at 527.743 kb on + strand, within GFF477at 527.744 kb on - strand, within GFF477at 527.781 kb on + strand, within GFF477at 527.781 kb on + strand, within GFF477at 527.781 kb on + strand, within GFF477at 527.837 kb on + strand, within GFF477at 527.838 kb on - strand, within GFF477at 527.838 kb on - strand, within GFF477at 528.046 kb on + strand, within GFF477at 528.047 kb on - strand, within GFF477at 528.064 kb on + strand, within GFF477at 528.065 kb on - strand, within GFF477at 528.079 kb on + strand, within GFF477at 528.119 kb on - strand, within GFF477at 528.132 kb on - strand, within GFF477at 528.132 kb on - strand, within GFF477at 528.278 kb on + strandat 528.303 kb on + strandat 528.304 kb on - strandat 528.330 kb on + strandat 528.361 kb on + strandat 528.362 kb on - strandat 528.362 kb on - strandat 528.390 kb on + strandat 528.390 kb on + strandat 528.390 kb on + strandat 528.391 kb on - strandat 528.391 kb on - strandat 528.408 kb on + strandat 528.408 kb on + strandat 528.409 kb on - strandat 528.412 kb on + strandat 528.445 kb on + strandat 528.446 kb on - strandat 528.446 kb on - strandat 528.447 kb on + strandat 528.447 kb on + strandat 528.448 kb on - strandat 528.457 kb on + strandat 528.491 kb on + strand, within GFF478at 528.537 kb on + strand, within GFF478at 528.585 kb on + strand, within GFF478at 528.648 kb on - strand, within GFF478at 528.696 kb on + strand, within GFF478at 528.697 kb on - strand, within GFF478at 528.714 kb on + strand, within GFF478at 528.714 kb on + strand, within GFF478at 528.718 kb on + strand, within GFF478at 528.718 kb on + strand, within GFF478at 528.718 kb on + strand, within GFF478at 528.718 kb on + strand, within GFF478at 528.718 kb on + strand, within GFF478at 528.718 kb on + strand, within GFF478at 528.719 kb on - strand, within GFF478at 528.719 kb on - strand, within GFF478at 528.719 kb on - strand, within GFF478at 528.719 kb on - strand, within GFF478at 528.719 kb on - strand, within GFF478at 528.737 kb on - strand, within GFF478at 528.814 kb on + strand, within GFF478at 528.814 kb on + strand, within GFF478at 528.814 kb on + strand, within GFF478at 528.814 kb on + strand, within GFF478at 528.814 kb on + strand, within GFF478at 528.815 kb on - strand, within GFF478at 528.815 kb on - strand, within GFF478at 528.815 kb on - strand, within GFF478at 528.815 kb on - strand, within GFF478at 528.815 kb on - strand, within GFF478at 528.815 kb on - strand, within GFF478at 528.840 kb on + strand, within GFF478at 528.840 kb on + strand, within GFF478at 528.841 kb on - strand, within GFF478at 528.841 kb on - strand, within GFF478at 528.841 kb on - strand, within GFF478at 528.841 kb on - strand, within GFF478at 528.911 kb on - strand, within GFF478at 528.985 kb on + strand, within GFF478at 528.985 kb on + strand, within GFF478at 529.012 kb on - strand, within GFF478at 529.062 kb on + strand, within GFF478at 529.129 kb on - strandat 529.139 kb on + strandat 529.139 kb on + strandat 529.139 kb on + strandat 529.140 kb on - strandat 529.152 kb on + strandat 529.172 kb on + strandat 529.239 kb on - strand, within GFF479at 529.353 kb on - strand, within GFF479at 529.510 kb on + strandat 529.510 kb on + strandat 529.510 kb on + strandat 529.510 kb on + strandat 529.510 kb on + strandat 529.511 kb on - strandat 529.518 kb on + strandat 529.518 kb on + strandat 529.518 kb on + strandat 529.536 kb on + strandat 529.536 kb on + strandat 529.537 kb on - strandat 529.557 kb on + strand, within GFF480at 529.619 kb on + strand, within GFF480at 529.762 kb on - strand, within GFF480at 529.762 kb on - strand, within GFF480at 529.802 kb on + strand, within GFF480at 529.802 kb on + strand, within GFF480at 529.884 kb on - strand, within GFF480at 529.884 kb on - strand, within GFF480at 529.884 kb on - strand, within GFF480at 529.884 kb on - strand, within GFF480at 529.904 kb on - strand, within GFF480at 529.904 kb on - strand, within GFF480at 529.926 kb on - strand, within GFF480at 529.959 kb on + strand, within GFF480at 529.959 kb on + strand, within GFF480at 529.959 kb on + strand, within GFF480at 529.960 kb on - strand, within GFF480at 529.960 kb on - strand, within GFF480at 530.004 kb on - strand, within GFF480at 530.041 kb on + strand, within GFF480at 530.041 kb on + strand, within GFF480at 530.042 kb on - strand, within GFF480at 530.055 kb on + strand, within GFF480at 530.056 kb on - strand, within GFF480at 530.056 kb on - strand, within GFF480at 530.096 kb on + strand, within GFF480

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
remove
527,463 + GFF477 0.48 +0.5
527,556 - GFF477 0.53 -1.1
527,568 + GFF477 0.54 -0.4
527,578 + GFF477 0.54 -1.1
527,578 + GFF477 0.54 -1.1
527,578 + GFF477 0.54 -1.3
527,579 - GFF477 0.54 -0.1
527,579 - GFF477 0.54 -2.3
527,587 + GFF477 0.55 -3.0
527,588 - GFF477 0.55 -1.9
527,653 + GFF477 0.58 -0.4
527,653 + GFF477 0.58 -2.1
527,697 + GFF477 0.61 -2.1
527,697 + GFF477 0.61 -1.9
527,697 + GFF477 0.61 -1.5
527,697 + GFF477 0.61 -1.5
527,698 - GFF477 0.61 -1.1
527,698 - GFF477 0.61 -0.3
527,698 - GFF477 0.61 -1.1
527,698 - GFF477 0.61 -1.9
527,743 + GFF477 0.63 -1.1
527,743 + GFF477 0.63 +0.5
527,743 + GFF477 0.63 -1.1
527,743 + GFF477 0.63 -1.4
527,744 - GFF477 0.64 -1.4
527,781 + GFF477 0.66 -0.9
527,781 + GFF477 0.66 -0.5
527,781 + GFF477 0.66 -1.1
527,837 + GFF477 0.69 -2.4
527,838 - GFF477 0.69 -1.1
527,838 - GFF477 0.69 -1.6
528,046 + GFF477 0.80 -0.1
528,047 - GFF477 0.80 -1.7
528,064 + GFF477 0.81 -0.6
528,065 - GFF477 0.81 -1.7
528,079 + GFF477 0.82 -0.3
528,119 - GFF477 0.85 -1.3
528,132 - GFF477 0.85 -1.1
528,132 - GFF477 0.85 -1.0
528,278 + -1.8
528,303 + -0.7
528,304 - -0.7
528,330 + -1.3
528,361 + -1.4
528,362 - -2.6
528,362 - -1.8
528,390 + -0.1
528,390 + -1.3
528,390 + -3.9
528,391 - +0.6
528,391 - -0.8
528,408 + +0.1
528,408 + -1.3
528,409 - -0.6
528,412 + -0.3
528,445 + -1.4
528,446 - -2.0
528,446 - -0.1
528,447 + -2.9
528,447 + -0.7
528,448 - +0.0
528,457 + -1.1
528,491 + GFF478 0.13 -1.4
528,537 + GFF478 0.19 +1.2
528,585 + GFF478 0.25 -1.9
528,648 - GFF478 0.34 -2.6
528,696 + GFF478 0.40 -1.4
528,697 - GFF478 0.40 -0.9
528,714 + GFF478 0.42 -1.8
528,714 + GFF478 0.42 -1.3
528,718 + GFF478 0.43 -1.9
528,718 + GFF478 0.43 -2.3
528,718 + GFF478 0.43 -1.0
528,718 + GFF478 0.43 -0.4
528,718 + GFF478 0.43 -1.1
528,718 + GFF478 0.43 -3.0
528,719 - GFF478 0.43 -0.4
528,719 - GFF478 0.43 -1.4
528,719 - GFF478 0.43 -1.4
528,719 - GFF478 0.43 -1.1
528,719 - GFF478 0.43 -0.8
528,737 - GFF478 0.46 -0.7
528,814 + GFF478 0.56 -2.1
528,814 + GFF478 0.56 -1.9
528,814 + GFF478 0.56 -0.7
528,814 + GFF478 0.56 -2.9
528,814 + GFF478 0.56 -2.1
528,815 - GFF478 0.56 -1.7
528,815 - GFF478 0.56 -0.5
528,815 - GFF478 0.56 -1.0
528,815 - GFF478 0.56 -2.1
528,815 - GFF478 0.56 -0.3
528,815 - GFF478 0.56 -0.1
528,840 + GFF478 0.59 -0.7
528,840 + GFF478 0.59 -0.4
528,841 - GFF478 0.59 -2.0
528,841 - GFF478 0.59 -0.1
528,841 - GFF478 0.59 -1.7
528,841 - GFF478 0.59 -2.0
528,911 - GFF478 0.69 -0.1
528,985 + GFF478 0.79 -0.9
528,985 + GFF478 0.79 -1.4
529,012 - GFF478 0.82 -0.1
529,062 + GFF478 0.89 -1.9
529,129 - +0.3
529,139 + +0.5
529,139 + -0.5
529,139 + -0.4
529,140 - -1.4
529,152 + -0.5
529,172 + -0.4
529,239 - GFF479 0.30 -0.1
529,353 - GFF479 0.69 -1.1
529,510 + -1.7
529,510 + -0.4
529,510 + -1.8
529,510 + -2.8
529,510 + +0.9
529,511 - -1.3
529,518 + -0.7
529,518 + -3.2
529,518 + +0.1
529,536 + +0.3
529,536 + -1.1
529,537 - -2.1
529,557 + GFF480 0.10 -1.9
529,619 + GFF480 0.16 -2.0
529,762 - GFF480 0.28 +0.2
529,762 - GFF480 0.28 -2.2
529,802 + GFF480 0.32 -1.9
529,802 + GFF480 0.32 -0.5
529,884 - GFF480 0.39 -0.1
529,884 - GFF480 0.39 -1.9
529,884 - GFF480 0.39 -1.9
529,884 - GFF480 0.39 -1.8
529,904 - GFF480 0.41 -1.7
529,904 - GFF480 0.41 -1.7
529,926 - GFF480 0.43 -1.1
529,959 + GFF480 0.46 -1.7
529,959 + GFF480 0.46 -2.1
529,959 + GFF480 0.46 +0.5
529,960 - GFF480 0.46 -1.1
529,960 - GFF480 0.46 -2.0
530,004 - GFF480 0.50 -1.7
530,041 + GFF480 0.53 -1.0
530,041 + GFF480 0.53 -1.1
530,042 - GFF480 0.53 -1.1
530,055 + GFF480 0.54 -0.7
530,056 - GFF480 0.54 -1.6
530,056 - GFF480 0.54 -1.2
530,096 + GFF480 0.58 -1.3

Or see this region's nucleotide sequence