Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF474 and GFF475 are separated by 4 nucleotides GFF475 and GFF476 are separated by 6 nucleotides GFF476 and GFF477 are separated by 10 nucleotides GFF477 and GFF478 are separated by 1 nucleotides GFF478 and GFF479 are separated by 9 nucleotides
GFF474 - NADP-dependent malic enzyme, at 524,638 to 525,840
GFF474
GFF475 - Succinate dehydrogenase cytochrome b556 subunit, at 525,845 to 526,237
GFF475
GFF476 - hypothetical protein, at 526,244 to 526,597
GFF476
GFF477 - Succinate dehydrogenase flavoprotein subunit, at 526,608 to 528,395
GFF477
GFF478 - Succinate dehydrogenase iron-sulfur subunit, at 528,397 to 529,143
GFF478
GFF479 - FAD assembly factor SdhE, at 529,153 to 529,443
GFF479
Position (kb) 526
527
528
529 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 525.757 kb on + strand at 525.758 kb on - strand at 525.758 kb on - strand at 525.763 kb on - strand at 525.796 kb on + strand at 525.796 kb on + strand at 525.797 kb on - strand at 525.797 kb on - strand at 525.797 kb on - strand at 525.797 kb on - strand at 525.838 kb on + strand at 525.853 kb on + strand at 525.854 kb on - strand at 525.891 kb on + strand, within GFF475 at 525.892 kb on - strand, within GFF475 at 525.895 kb on + strand, within GFF475 at 525.897 kb on - strand, within GFF475 at 525.928 kb on + strand, within GFF475 at 525.929 kb on - strand, within GFF475 at 525.982 kb on - strand, within GFF475 at 525.992 kb on + strand, within GFF475 at 525.992 kb on + strand, within GFF475 at 525.992 kb on + strand, within GFF475 at 525.992 kb on + strand, within GFF475 at 525.992 kb on + strand, within GFF475 at 525.993 kb on - strand, within GFF475 at 525.993 kb on - strand, within GFF475 at 525.993 kb on - strand, within GFF475 at 525.993 kb on - strand, within GFF475 at 525.993 kb on - strand, within GFF475 at 526.111 kb on + strand, within GFF475 at 526.111 kb on + strand, within GFF475 at 526.111 kb on + strand, within GFF475 at 526.112 kb on - strand, within GFF475 at 526.112 kb on - strand, within GFF475 at 526.112 kb on - strand, within GFF475 at 526.248 kb on + strand at 526.248 kb on + strand at 526.249 kb on - strand at 526.249 kb on - strand at 526.249 kb on - strand at 526.249 kb on - strand at 526.249 kb on - strand at 526.272 kb on - strand at 526.449 kb on + strand, within GFF476 at 526.450 kb on - strand, within GFF476 at 526.450 kb on - strand, within GFF476 at 526.490 kb on + strand, within GFF476 at 526.491 kb on - strand, within GFF476 at 526.533 kb on + strand, within GFF476 at 526.533 kb on + strand, within GFF476 at 526.533 kb on + strand, within GFF476 at 526.534 kb on - strand, within GFF476 at 526.537 kb on + strand, within GFF476 at 526.537 kb on + strand, within GFF476 at 526.538 kb on - strand, within GFF476 at 526.566 kb on + strand at 526.567 kb on - strand at 526.595 kb on + strand at 526.596 kb on - strand at 526.596 kb on - strand at 526.645 kb on + strand at 526.645 kb on + strand at 526.645 kb on + strand at 526.646 kb on - strand at 526.660 kb on + strand at 526.660 kb on + strand at 526.772 kb on + strand at 526.772 kb on + strand at 526.772 kb on + strand at 526.772 kb on + strand at 526.772 kb on + strand at 526.773 kb on - strand at 526.841 kb on + strand, within GFF477 at 526.841 kb on + strand, within GFF477 at 526.841 kb on + strand, within GFF477 at 526.841 kb on + strand, within GFF477 at 526.841 kb on + strand, within GFF477 at 526.841 kb on + strand, within GFF477 at 526.841 kb on + strand, within GFF477 at 526.841 kb on + strand, within GFF477 at 526.842 kb on - strand, within GFF477 at 526.842 kb on - strand, within GFF477 at 526.842 kb on - strand, within GFF477 at 526.842 kb on - strand, within GFF477 at 526.845 kb on + strand, within GFF477 at 526.845 kb on + strand, within GFF477 at 526.845 kb on + strand, within GFF477 at 526.845 kb on + strand, within GFF477 at 526.845 kb on + strand, within GFF477 at 526.845 kb on + strand, within GFF477 at 526.845 kb on + strand, within GFF477 at 526.845 kb on + strand, within GFF477 at 526.845 kb on + strand, within GFF477 at 526.845 kb on + strand, within GFF477 at 526.845 kb on + strand, within GFF477 at 526.845 kb on + strand, within GFF477 at 526.846 kb on - strand, within GFF477 at 526.846 kb on - strand, within GFF477 at 526.846 kb on - strand, within GFF477 at 526.846 kb on - strand, within GFF477 at 526.846 kb on - strand, within GFF477 at 526.898 kb on + strand, within GFF477 at 526.898 kb on + strand, within GFF477 at 526.899 kb on - strand, within GFF477 at 526.899 kb on - strand, within GFF477 at 526.899 kb on - strand, within GFF477 at 526.899 kb on - strand, within GFF477 at 526.899 kb on - strand, within GFF477 at 526.899 kb on - strand, within GFF477 at 526.925 kb on + strand, within GFF477 at 527.078 kb on + strand, within GFF477 at 527.078 kb on + strand, within GFF477 at 527.079 kb on - strand, within GFF477 at 527.079 kb on - strand, within GFF477 at 527.079 kb on - strand, within GFF477 at 527.165 kb on + strand, within GFF477 at 527.273 kb on + strand, within GFF477 at 527.273 kb on + strand, within GFF477 at 527.283 kb on + strand, within GFF477 at 527.283 kb on + strand, within GFF477 at 527.283 kb on + strand, within GFF477 at 527.283 kb on + strand, within GFF477 at 527.284 kb on - strand, within GFF477 at 527.284 kb on - strand, within GFF477 at 527.285 kb on + strand, within GFF477 at 527.285 kb on + strand, within GFF477 at 527.285 kb on + strand, within GFF477 at 527.375 kb on - strand, within GFF477 at 527.463 kb on + strand, within GFF477 at 527.556 kb on - strand, within GFF477 at 527.568 kb on + strand, within GFF477 at 527.578 kb on + strand, within GFF477 at 527.578 kb on + strand, within GFF477 at 527.578 kb on + strand, within GFF477 at 527.579 kb on - strand, within GFF477 at 527.579 kb on - strand, within GFF477 at 527.587 kb on + strand, within GFF477 at 527.588 kb on - strand, within GFF477 at 527.653 kb on + strand, within GFF477 at 527.653 kb on + strand, within GFF477 at 527.697 kb on + strand, within GFF477 at 527.697 kb on + strand, within GFF477 at 527.697 kb on + strand, within GFF477 at 527.697 kb on + strand, within GFF477 at 527.698 kb on - strand, within GFF477 at 527.698 kb on - strand, within GFF477 at 527.698 kb on - strand, within GFF477 at 527.698 kb on - strand, within GFF477 at 527.743 kb on + strand, within GFF477 at 527.743 kb on + strand, within GFF477 at 527.743 kb on + strand, within GFF477 at 527.743 kb on + strand, within GFF477 at 527.744 kb on - strand, within GFF477 at 527.781 kb on + strand, within GFF477 at 527.781 kb on + strand, within GFF477 at 527.781 kb on + strand, within GFF477 at 527.837 kb on + strand, within GFF477 at 527.838 kb on - strand, within GFF477 at 527.838 kb on - strand, within GFF477 at 528.046 kb on + strand, within GFF477 at 528.047 kb on - strand, within GFF477 at 528.064 kb on + strand, within GFF477 at 528.065 kb on - strand, within GFF477 at 528.079 kb on + strand, within GFF477 at 528.119 kb on - strand, within GFF477 at 528.132 kb on - strand, within GFF477 at 528.132 kb on - strand, within GFF477 at 528.278 kb on + strand at 528.303 kb on + strand at 528.304 kb on - strand at 528.330 kb on + strand at 528.361 kb on + strand at 528.362 kb on - strand at 528.362 kb on - strand at 528.390 kb on + strand at 528.390 kb on + strand at 528.390 kb on + strand at 528.391 kb on - strand at 528.391 kb on - strand at 528.408 kb on + strand at 528.408 kb on + strand at 528.409 kb on - strand at 528.412 kb on + strand at 528.445 kb on + strand at 528.446 kb on - strand at 528.446 kb on - strand at 528.447 kb on + strand at 528.447 kb on + strand at 528.448 kb on - strand at 528.457 kb on + strand at 528.491 kb on + strand, within GFF478 at 528.537 kb on + strand, within GFF478 at 528.585 kb on + strand, within GFF478 at 528.648 kb on - strand, within GFF478 at 528.696 kb on + strand, within GFF478 at 528.697 kb on - strand, within GFF478 at 528.714 kb on + strand, within GFF478 at 528.714 kb on + strand, within GFF478 at 528.718 kb on + strand, within GFF478 at 528.718 kb on + strand, within GFF478 at 528.718 kb on + strand, within GFF478 at 528.718 kb on + strand, within GFF478 at 528.718 kb on + strand, within GFF478 at 528.718 kb on + strand, within GFF478 at 528.719 kb on - strand, within GFF478 at 528.719 kb on - strand, within GFF478 at 528.719 kb on - strand, within GFF478 at 528.719 kb on - strand, within GFF478 at 528.719 kb on - strand, within GFF478 at 528.737 kb on - strand, within GFF478 at 528.814 kb on + strand, within GFF478 at 528.814 kb on + strand, within GFF478 at 528.814 kb on + strand, within GFF478 at 528.814 kb on + strand, within GFF478 at 528.814 kb on + strand, within GFF478 at 528.815 kb on - strand, within GFF478 at 528.815 kb on - strand, within GFF478 at 528.815 kb on - strand, within GFF478 at 528.815 kb on - strand, within GFF478 at 528.815 kb on - strand, within GFF478 at 528.815 kb on - strand, within GFF478 at 528.840 kb on + strand, within GFF478 at 528.840 kb on + strand, within GFF478 at 528.841 kb on - strand, within GFF478 at 528.841 kb on - strand, within GFF478 at 528.841 kb on - strand, within GFF478 at 528.841 kb on - strand, within GFF478 at 528.911 kb on - strand, within GFF478 at 528.985 kb on + strand, within GFF478 at 528.985 kb on + strand, within GFF478 at 529.012 kb on - strand, within GFF478 at 529.062 kb on + strand, within GFF478 at 529.129 kb on - strand at 529.139 kb on + strand at 529.139 kb on + strand at 529.139 kb on + strand at 529.140 kb on - strand at 529.152 kb on + strand at 529.172 kb on + strand at 529.239 kb on - strand, within GFF479 at 529.353 kb on - strand, within GFF479
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 525,757 + -0.1 525,758 - -0.4 525,758 - +0.5 525,763 - -1.1 525,796 + -2.0 525,796 + -1.7 525,797 - -1.1 525,797 - -1.3 525,797 - -1.1 525,797 - -0.7 525,838 + -1.3 525,853 + -0.3 525,854 - -0.3 525,891 + GFF475 0.12 -0.1 525,892 - GFF475 0.12 -0.9 525,895 + GFF475 0.13 -2.1 525,897 - GFF475 0.13 -0.9 525,928 + GFF475 0.21 -2.0 525,929 - GFF475 0.21 -0.1 525,982 - GFF475 0.35 -1.3 525,992 + GFF475 0.37 -1.0 525,992 + GFF475 0.37 -0.7 525,992 + GFF475 0.37 -0.1 525,992 + GFF475 0.37 -1.6 525,992 + GFF475 0.37 -1.1 525,993 - GFF475 0.38 -0.8 525,993 - GFF475 0.38 -0.8 525,993 - GFF475 0.38 -1.1 525,993 - GFF475 0.38 -1.2 525,993 - GFF475 0.38 -0.4 526,111 + GFF475 0.68 -1.4 526,111 + GFF475 0.68 -1.1 526,111 + GFF475 0.68 -1.7 526,112 - GFF475 0.68 -0.5 526,112 - GFF475 0.68 -1.4 526,112 - GFF475 0.68 -3.0 526,248 + -2.1 526,248 + -1.7 526,249 - -0.1 526,249 - -1.9 526,249 - -1.7 526,249 - +0.5 526,249 - -2.3 526,272 - -0.6 526,449 + GFF476 0.58 -1.1 526,450 - GFF476 0.58 -0.9 526,450 - GFF476 0.58 -1.1 526,490 + GFF476 0.69 -1.4 526,491 - GFF476 0.70 +0.9 526,533 + GFF476 0.82 -0.4 526,533 + GFF476 0.82 -0.9 526,533 + GFF476 0.82 -1.6 526,534 - GFF476 0.82 -0.9 526,537 + GFF476 0.83 -2.4 526,537 + GFF476 0.83 -2.2 526,538 - GFF476 0.83 +0.3 526,566 + -0.6 526,567 - -0.3 526,595 + -0.8 526,596 - +0.6 526,596 - -1.5 526,645 + -0.2 526,645 + +0.6 526,645 + -0.5 526,646 - -2.5 526,660 + -1.1 526,660 + -0.7 526,772 + -1.9 526,772 + -1.9 526,772 + -1.8 526,772 + -0.9 526,772 + +0.1 526,773 - -1.1 526,841 + GFF477 0.13 -0.6 526,841 + GFF477 0.13 -0.7 526,841 + GFF477 0.13 -0.1 526,841 + GFF477 0.13 -0.3 526,841 + GFF477 0.13 -2.6 526,841 + GFF477 0.13 +0.1 526,841 + GFF477 0.13 -1.5 526,841 + GFF477 0.13 -1.6 526,842 - GFF477 0.13 -1.3 526,842 - GFF477 0.13 -1.4 526,842 - GFF477 0.13 -1.1 526,842 - GFF477 0.13 -0.9 526,845 + GFF477 0.13 -1.4 526,845 + GFF477 0.13 -1.0 526,845 + GFF477 0.13 -1.4 526,845 + GFF477 0.13 -1.1 526,845 + GFF477 0.13 -1.9 526,845 + GFF477 0.13 -1.1 526,845 + GFF477 0.13 -2.0 526,845 + GFF477 0.13 -1.7 526,845 + GFF477 0.13 -0.3 526,845 + GFF477 0.13 -1.1 526,845 + GFF477 0.13 -2.3 526,845 + GFF477 0.13 -1.6 526,846 - GFF477 0.13 -2.0 526,846 - GFF477 0.13 -0.1 526,846 - GFF477 0.13 -2.7 526,846 - GFF477 0.13 -1.9 526,846 - GFF477 0.13 -1.3 526,898 + GFF477 0.16 -2.3 526,898 + GFF477 0.16 -2.2 526,899 - GFF477 0.16 -0.5 526,899 - GFF477 0.16 -0.4 526,899 - GFF477 0.16 +0.9 526,899 - GFF477 0.16 -1.1 526,899 - GFF477 0.16 +0.0 526,899 - GFF477 0.16 -3.1 526,925 + GFF477 0.18 +0.1 527,078 + GFF477 0.26 -1.1 527,078 + GFF477 0.26 -1.5 527,079 - GFF477 0.26 -1.8 527,079 - GFF477 0.26 -1.1 527,079 - GFF477 0.26 -0.9 527,165 + GFF477 0.31 -1.7 527,273 + GFF477 0.37 -0.1 527,273 + GFF477 0.37 -1.2 527,283 + GFF477 0.38 -0.1 527,283 + GFF477 0.38 -1.5 527,283 + GFF477 0.38 -0.4 527,283 + GFF477 0.38 -1.1 527,284 - GFF477 0.38 -0.7 527,284 - GFF477 0.38 -0.5 527,285 + GFF477 0.38 -0.3 527,285 + GFF477 0.38 -1.2 527,285 + GFF477 0.38 -0.8 527,375 - GFF477 0.43 -0.1 527,463 + GFF477 0.48 +0.5 527,556 - GFF477 0.53 -1.1 527,568 + GFF477 0.54 -0.4 527,578 + GFF477 0.54 -1.1 527,578 + GFF477 0.54 -1.1 527,578 + GFF477 0.54 -1.3 527,579 - GFF477 0.54 -0.1 527,579 - GFF477 0.54 -2.3 527,587 + GFF477 0.55 -3.0 527,588 - GFF477 0.55 -1.9 527,653 + GFF477 0.58 -0.4 527,653 + GFF477 0.58 -2.1 527,697 + GFF477 0.61 -2.1 527,697 + GFF477 0.61 -1.9 527,697 + GFF477 0.61 -1.5 527,697 + GFF477 0.61 -1.5 527,698 - GFF477 0.61 -1.1 527,698 - GFF477 0.61 -0.3 527,698 - GFF477 0.61 -1.1 527,698 - GFF477 0.61 -1.9 527,743 + GFF477 0.63 -1.1 527,743 + GFF477 0.63 +0.5 527,743 + GFF477 0.63 -1.1 527,743 + GFF477 0.63 -1.4 527,744 - GFF477 0.64 -1.4 527,781 + GFF477 0.66 -0.9 527,781 + GFF477 0.66 -0.5 527,781 + GFF477 0.66 -1.1 527,837 + GFF477 0.69 -2.4 527,838 - GFF477 0.69 -1.1 527,838 - GFF477 0.69 -1.6 528,046 + GFF477 0.80 -0.1 528,047 - GFF477 0.80 -1.7 528,064 + GFF477 0.81 -0.6 528,065 - GFF477 0.81 -1.7 528,079 + GFF477 0.82 -0.3 528,119 - GFF477 0.85 -1.3 528,132 - GFF477 0.85 -1.1 528,132 - GFF477 0.85 -1.0 528,278 + -1.8 528,303 + -0.7 528,304 - -0.7 528,330 + -1.3 528,361 + -1.4 528,362 - -2.6 528,362 - -1.8 528,390 + -0.1 528,390 + -1.3 528,390 + -3.9 528,391 - +0.6 528,391 - -0.8 528,408 + +0.1 528,408 + -1.3 528,409 - -0.6 528,412 + -0.3 528,445 + -1.4 528,446 - -2.0 528,446 - -0.1 528,447 + -2.9 528,447 + -0.7 528,448 - +0.0 528,457 + -1.1 528,491 + GFF478 0.13 -1.4 528,537 + GFF478 0.19 +1.2 528,585 + GFF478 0.25 -1.9 528,648 - GFF478 0.34 -2.6 528,696 + GFF478 0.40 -1.4 528,697 - GFF478 0.40 -0.9 528,714 + GFF478 0.42 -1.8 528,714 + GFF478 0.42 -1.3 528,718 + GFF478 0.43 -1.9 528,718 + GFF478 0.43 -2.3 528,718 + GFF478 0.43 -1.0 528,718 + GFF478 0.43 -0.4 528,718 + GFF478 0.43 -1.1 528,718 + GFF478 0.43 -3.0 528,719 - GFF478 0.43 -0.4 528,719 - GFF478 0.43 -1.4 528,719 - GFF478 0.43 -1.4 528,719 - GFF478 0.43 -1.1 528,719 - GFF478 0.43 -0.8 528,737 - GFF478 0.46 -0.7 528,814 + GFF478 0.56 -2.1 528,814 + GFF478 0.56 -1.9 528,814 + GFF478 0.56 -0.7 528,814 + GFF478 0.56 -2.9 528,814 + GFF478 0.56 -2.1 528,815 - GFF478 0.56 -1.7 528,815 - GFF478 0.56 -0.5 528,815 - GFF478 0.56 -1.0 528,815 - GFF478 0.56 -2.1 528,815 - GFF478 0.56 -0.3 528,815 - GFF478 0.56 -0.1 528,840 + GFF478 0.59 -0.7 528,840 + GFF478 0.59 -0.4 528,841 - GFF478 0.59 -2.0 528,841 - GFF478 0.59 -0.1 528,841 - GFF478 0.59 -1.7 528,841 - GFF478 0.59 -2.0 528,911 - GFF478 0.69 -0.1 528,985 + GFF478 0.79 -0.9 528,985 + GFF478 0.79 -1.4 529,012 - GFF478 0.82 -0.1 529,062 + GFF478 0.89 -1.9 529,129 - +0.3 529,139 + +0.5 529,139 + -0.5 529,139 + -0.4 529,140 - -1.4 529,152 + -0.5 529,172 + -0.4 529,239 - GFF479 0.30 -0.1 529,353 - GFF479 0.69 -1.1
Or see this region's nucleotide sequence