Strain Fitness in Methylophilus sp. DMC18 around GFF474

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF473 and GFF474 are separated by 192 nucleotidesGFF474 and GFF475 are separated by 4 nucleotidesGFF475 and GFF476 are separated by 6 nucleotidesGFF476 and GFF477 are separated by 10 nucleotides GFF473 - putative HTH-type transcriptional regulator YurK, at 523,711 to 524,445 GFF473 GFF474 - NADP-dependent malic enzyme, at 524,638 to 525,840 GFF474 GFF475 - Succinate dehydrogenase cytochrome b556 subunit, at 525,845 to 526,237 GFF475 GFF476 - hypothetical protein, at 526,244 to 526,597 GFF476 GFF477 - Succinate dehydrogenase flavoprotein subunit, at 526,608 to 528,395 GFF477 Position (kb) 524 525 526Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 523.650 kb on + strandat 523.661 kb on + strandat 523.716 kb on + strandat 523.738 kb on + strandat 523.748 kb on + strandat 523.748 kb on + strandat 523.750 kb on + strandat 523.750 kb on + strandat 523.750 kb on + strandat 523.750 kb on + strandat 523.750 kb on + strandat 523.761 kb on + strandat 523.846 kb on + strand, within GFF473at 523.846 kb on + strand, within GFF473at 523.880 kb on + strand, within GFF473at 523.880 kb on + strand, within GFF473at 523.880 kb on + strand, within GFF473at 523.880 kb on + strand, within GFF473at 523.884 kb on + strand, within GFF473at 523.884 kb on + strand, within GFF473at 523.884 kb on + strand, within GFF473at 523.929 kb on + strand, within GFF473at 524.012 kb on + strand, within GFF473at 524.099 kb on + strand, within GFF473at 524.154 kb on + strand, within GFF473at 524.221 kb on + strand, within GFF473at 524.221 kb on + strand, within GFF473at 524.221 kb on + strand, within GFF473at 524.221 kb on + strand, within GFF473at 524.221 kb on + strand, within GFF473at 524.221 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.249 kb on + strand, within GFF473at 524.348 kb on + strand, within GFF473at 524.376 kb on + strandat 524.396 kb on + strandat 524.425 kb on + strandat 524.425 kb on + strandat 524.425 kb on + strandat 524.425 kb on + strandat 524.425 kb on + strandat 524.425 kb on + strandat 524.425 kb on + strandat 524.426 kb on - strandat 524.583 kb on + strandat 524.584 kb on - strandat 524.584 kb on - strandat 524.621 kb on + strandat 524.621 kb on + strandat 524.621 kb on + strandat 524.621 kb on + strandat 524.621 kb on + strandat 524.621 kb on + strandat 524.621 kb on + strandat 524.668 kb on + strandat 524.669 kb on - strandat 524.739 kb on - strandat 524.749 kb on + strandat 524.806 kb on + strand, within GFF474at 524.806 kb on + strand, within GFF474at 524.807 kb on - strand, within GFF474at 524.812 kb on + strand, within GFF474at 524.812 kb on + strand, within GFF474at 524.812 kb on + strand, within GFF474at 524.812 kb on + strand, within GFF474at 524.812 kb on + strand, within GFF474at 524.813 kb on - strand, within GFF474at 524.813 kb on - strand, within GFF474at 524.815 kb on - strand, within GFF474at 524.943 kb on + strand, within GFF474at 524.943 kb on + strand, within GFF474at 525.045 kb on + strand, within GFF474at 525.069 kb on + strand, within GFF474at 525.069 kb on + strand, within GFF474at 525.069 kb on + strand, within GFF474at 525.099 kb on + strand, within GFF474at 525.158 kb on + strand, within GFF474at 525.159 kb on - strand, within GFF474at 525.252 kb on + strand, within GFF474at 525.271 kb on + strand, within GFF474at 525.401 kb on + strand, within GFF474at 525.401 kb on + strand, within GFF474at 525.401 kb on + strand, within GFF474at 525.402 kb on - strand, within GFF474at 525.402 kb on - strand, within GFF474at 525.402 kb on - strand, within GFF474at 525.454 kb on - strand, within GFF474at 525.543 kb on + strand, within GFF474at 525.543 kb on + strand, within GFF474at 525.543 kb on + strand, within GFF474at 525.602 kb on - strand, within GFF474at 525.757 kb on + strandat 525.758 kb on - strandat 525.758 kb on - strandat 525.763 kb on - strandat 525.796 kb on + strandat 525.796 kb on + strandat 525.797 kb on - strandat 525.797 kb on - strandat 525.797 kb on - strandat 525.797 kb on - strandat 525.838 kb on + strandat 525.853 kb on + strandat 525.854 kb on - strandat 525.891 kb on + strand, within GFF475at 525.892 kb on - strand, within GFF475at 525.895 kb on + strand, within GFF475at 525.897 kb on - strand, within GFF475at 525.928 kb on + strand, within GFF475at 525.929 kb on - strand, within GFF475at 525.982 kb on - strand, within GFF475at 525.992 kb on + strand, within GFF475at 525.992 kb on + strand, within GFF475at 525.992 kb on + strand, within GFF475at 525.992 kb on + strand, within GFF475at 525.992 kb on + strand, within GFF475at 525.993 kb on - strand, within GFF475at 525.993 kb on - strand, within GFF475at 525.993 kb on - strand, within GFF475at 525.993 kb on - strand, within GFF475at 525.993 kb on - strand, within GFF475at 526.111 kb on + strand, within GFF475at 526.111 kb on + strand, within GFF475at 526.111 kb on + strand, within GFF475at 526.112 kb on - strand, within GFF475at 526.112 kb on - strand, within GFF475at 526.112 kb on - strand, within GFF475at 526.248 kb on + strandat 526.248 kb on + strandat 526.249 kb on - strandat 526.249 kb on - strandat 526.249 kb on - strandat 526.249 kb on - strandat 526.249 kb on - strandat 526.272 kb on - strandat 526.449 kb on + strand, within GFF476at 526.450 kb on - strand, within GFF476at 526.450 kb on - strand, within GFF476at 526.490 kb on + strand, within GFF476at 526.491 kb on - strand, within GFF476at 526.533 kb on + strand, within GFF476at 526.533 kb on + strand, within GFF476at 526.533 kb on + strand, within GFF476at 526.534 kb on - strand, within GFF476at 526.537 kb on + strand, within GFF476at 526.537 kb on + strand, within GFF476at 526.538 kb on - strand, within GFF476at 526.566 kb on + strandat 526.567 kb on - strandat 526.595 kb on + strandat 526.596 kb on - strandat 526.596 kb on - strandat 526.645 kb on + strandat 526.645 kb on + strandat 526.645 kb on + strandat 526.646 kb on - strandat 526.660 kb on + strandat 526.660 kb on + strandat 526.772 kb on + strandat 526.772 kb on + strandat 526.772 kb on + strandat 526.772 kb on + strandat 526.772 kb on + strandat 526.773 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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523,650 + -1.1
523,661 + -1.1
523,716 + -0.7
523,738 + -1.1
523,748 + +0.1
523,748 + -0.4
523,750 + -1.8
523,750 + -1.7
523,750 + -0.9
523,750 + -0.4
523,750 + -0.7
523,761 + -0.4
523,846 + GFF473 0.18 -2.1
523,846 + GFF473 0.18 -0.7
523,880 + GFF473 0.23 -2.4
523,880 + GFF473 0.23 -0.3
523,880 + GFF473 0.23 -1.1
523,880 + GFF473 0.23 -1.1
523,884 + GFF473 0.24 -1.1
523,884 + GFF473 0.24 -0.4
523,884 + GFF473 0.24 -1.4
523,929 + GFF473 0.30 -1.9
524,012 + GFF473 0.41 -1.5
524,099 + GFF473 0.53 -0.9
524,154 + GFF473 0.60 -0.8
524,221 + GFF473 0.69 -0.3
524,221 + GFF473 0.69 -0.1
524,221 + GFF473 0.69 -1.7
524,221 + GFF473 0.69 -1.6
524,221 + GFF473 0.69 -0.1
524,221 + GFF473 0.69 -1.6
524,230 + GFF473 0.71 +0.1
524,230 + GFF473 0.71 -2.0
524,230 + GFF473 0.71 -0.7
524,230 + GFF473 0.71 -1.4
524,230 + GFF473 0.71 +0.1
524,230 + GFF473 0.71 -0.7
524,230 + GFF473 0.71 -1.1
524,230 + GFF473 0.71 -0.1
524,230 + GFF473 0.71 -2.1
524,230 + GFF473 0.71 -2.4
524,249 + GFF473 0.73 -0.1
524,348 + GFF473 0.87 -0.4
524,376 + -0.1
524,396 + -1.3
524,425 + -1.3
524,425 + +0.1
524,425 + +0.1
524,425 + -0.9
524,425 + -1.3
524,425 + -1.0
524,425 + +2.1
524,426 - -0.1
524,583 + -1.1
524,584 - -2.7
524,584 - -0.9
524,621 + +0.1
524,621 + -0.3
524,621 + -0.5
524,621 + -0.1
524,621 + -0.4
524,621 + -0.9
524,621 + -1.8
524,668 + -2.6
524,669 - -0.4
524,739 - -2.3
524,749 + -0.9
524,806 + GFF474 0.14 -0.9
524,806 + GFF474 0.14 -2.6
524,807 - GFF474 0.14 -0.9
524,812 + GFF474 0.14 -2.1
524,812 + GFF474 0.14 +0.5
524,812 + GFF474 0.14 -1.5
524,812 + GFF474 0.14 -1.3
524,812 + GFF474 0.14 -2.8
524,813 - GFF474 0.15 -1.6
524,813 - GFF474 0.15 +0.6
524,815 - GFF474 0.15 +0.5
524,943 + GFF474 0.25 -1.1
524,943 + GFF474 0.25 -1.4
525,045 + GFF474 0.34 -0.7
525,069 + GFF474 0.36 +0.0
525,069 + GFF474 0.36 -3.1
525,069 + GFF474 0.36 -0.1
525,099 + GFF474 0.38 -1.6
525,158 + GFF474 0.43 -0.4
525,159 - GFF474 0.43 -2.5
525,252 + GFF474 0.51 -1.9
525,271 + GFF474 0.53 -0.1
525,401 + GFF474 0.63 +0.4
525,401 + GFF474 0.63 -1.1
525,401 + GFF474 0.63 -1.7
525,402 - GFF474 0.64 -2.1
525,402 - GFF474 0.64 -1.2
525,402 - GFF474 0.64 -2.1
525,454 - GFF474 0.68 -1.9
525,543 + GFF474 0.75 -3.1
525,543 + GFF474 0.75 -2.1
525,543 + GFF474 0.75 -2.8
525,602 - GFF474 0.80 -0.7
525,757 + -0.1
525,758 - -0.4
525,758 - +0.5
525,763 - -1.1
525,796 + -2.0
525,796 + -1.7
525,797 - -1.1
525,797 - -1.3
525,797 - -1.1
525,797 - -0.7
525,838 + -1.3
525,853 + -0.3
525,854 - -0.3
525,891 + GFF475 0.12 -0.1
525,892 - GFF475 0.12 -0.9
525,895 + GFF475 0.13 -2.1
525,897 - GFF475 0.13 -0.9
525,928 + GFF475 0.21 -2.0
525,929 - GFF475 0.21 -0.1
525,982 - GFF475 0.35 -1.3
525,992 + GFF475 0.37 -1.0
525,992 + GFF475 0.37 -0.7
525,992 + GFF475 0.37 -0.1
525,992 + GFF475 0.37 -1.6
525,992 + GFF475 0.37 -1.1
525,993 - GFF475 0.38 -0.8
525,993 - GFF475 0.38 -0.8
525,993 - GFF475 0.38 -1.1
525,993 - GFF475 0.38 -1.2
525,993 - GFF475 0.38 -0.4
526,111 + GFF475 0.68 -1.4
526,111 + GFF475 0.68 -1.1
526,111 + GFF475 0.68 -1.7
526,112 - GFF475 0.68 -0.5
526,112 - GFF475 0.68 -1.4
526,112 - GFF475 0.68 -3.0
526,248 + -2.1
526,248 + -1.7
526,249 - -0.1
526,249 - -1.9
526,249 - -1.7
526,249 - +0.5
526,249 - -2.3
526,272 - -0.6
526,449 + GFF476 0.58 -1.1
526,450 - GFF476 0.58 -0.9
526,450 - GFF476 0.58 -1.1
526,490 + GFF476 0.69 -1.4
526,491 - GFF476 0.70 +0.9
526,533 + GFF476 0.82 -0.4
526,533 + GFF476 0.82 -0.9
526,533 + GFF476 0.82 -1.6
526,534 - GFF476 0.82 -0.9
526,537 + GFF476 0.83 -2.4
526,537 + GFF476 0.83 -2.2
526,538 - GFF476 0.83 +0.3
526,566 + -0.6
526,567 - -0.3
526,595 + -0.8
526,596 - +0.6
526,596 - -1.5
526,645 + -0.2
526,645 + +0.6
526,645 + -0.5
526,646 - -2.5
526,660 + -1.1
526,660 + -0.7
526,772 + -1.9
526,772 + -1.9
526,772 + -1.8
526,772 + -0.9
526,772 + +0.1
526,773 - -1.1

Or see this region's nucleotide sequence