Strain Fitness in Methylophilus sp. DMC18 around GFF473

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF472 and GFF473 are separated by 181 nucleotidesGFF473 and GFF474 are separated by 192 nucleotides GFF472 - (3S)-malyl-CoA thioesterase, at 522,648 to 523,529 GFF472 GFF473 - putative HTH-type transcriptional regulator YurK, at 523,711 to 524,445 GFF473 GFF474 - NADP-dependent malic enzyme, at 524,638 to 525,840 GFF474 Position (kb) 523 524 525Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 522.717 kb on - strandat 522.836 kb on - strand, within GFF472at 522.836 kb on - strand, within GFF472at 522.851 kb on - strand, within GFF472at 522.894 kb on + strand, within GFF472at 522.895 kb on - strand, within GFF472at 522.895 kb on - strand, within GFF472at 522.895 kb on - strand, within GFF472at 522.895 kb on - strand, within GFF472at 522.920 kb on - strand, within GFF472at 522.953 kb on + strand, within GFF472at 522.953 kb on + strand, within GFF472at 522.954 kb on - strand, within GFF472at 522.954 kb on - strand, within GFF472at 522.954 kb on - strand, within GFF472at 522.954 kb on - strand, within GFF472at 522.954 kb on - strand, within GFF472at 522.954 kb on - strand, within GFF472at 523.084 kb on - strand, within GFF472at 523.084 kb on - strand, within GFF472at 523.152 kb on + strand, within GFF472at 523.153 kb on - strand, within GFF472at 523.478 kb on + strandat 523.478 kb on + strandat 523.479 kb on - strandat 523.492 kb on + strandat 523.493 kb on - strandat 523.493 kb on - strandat 523.493 kb on - strandat 523.493 kb on - strandat 523.493 kb on - strandat 523.494 kb on + strandat 523.495 kb on - strandat 523.495 kb on - strandat 523.522 kb on + strandat 523.522 kb on + strandat 523.522 kb on + strandat 523.523 kb on - strandat 523.523 kb on - strandat 523.523 kb on - strandat 523.523 kb on - strandat 523.523 kb on - strandat 523.523 kb on - strandat 523.565 kb on + strandat 523.650 kb on + strandat 523.661 kb on + strandat 523.716 kb on + strandat 523.738 kb on + strandat 523.748 kb on + strandat 523.748 kb on + strandat 523.750 kb on + strandat 523.750 kb on + strandat 523.750 kb on + strandat 523.750 kb on + strandat 523.750 kb on + strandat 523.761 kb on + strandat 523.846 kb on + strand, within GFF473at 523.846 kb on + strand, within GFF473at 523.880 kb on + strand, within GFF473at 523.880 kb on + strand, within GFF473at 523.880 kb on + strand, within GFF473at 523.880 kb on + strand, within GFF473at 523.884 kb on + strand, within GFF473at 523.884 kb on + strand, within GFF473at 523.884 kb on + strand, within GFF473at 523.929 kb on + strand, within GFF473at 524.012 kb on + strand, within GFF473at 524.099 kb on + strand, within GFF473at 524.154 kb on + strand, within GFF473at 524.221 kb on + strand, within GFF473at 524.221 kb on + strand, within GFF473at 524.221 kb on + strand, within GFF473at 524.221 kb on + strand, within GFF473at 524.221 kb on + strand, within GFF473at 524.221 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.249 kb on + strand, within GFF473at 524.348 kb on + strand, within GFF473at 524.376 kb on + strandat 524.396 kb on + strandat 524.425 kb on + strandat 524.425 kb on + strandat 524.425 kb on + strandat 524.425 kb on + strandat 524.425 kb on + strandat 524.425 kb on + strandat 524.425 kb on + strandat 524.426 kb on - strandat 524.583 kb on + strandat 524.584 kb on - strandat 524.584 kb on - strandat 524.621 kb on + strandat 524.621 kb on + strandat 524.621 kb on + strandat 524.621 kb on + strandat 524.621 kb on + strandat 524.621 kb on + strandat 524.621 kb on + strandat 524.668 kb on + strandat 524.669 kb on - strandat 524.739 kb on - strandat 524.749 kb on + strandat 524.806 kb on + strand, within GFF474at 524.806 kb on + strand, within GFF474at 524.807 kb on - strand, within GFF474at 524.812 kb on + strand, within GFF474at 524.812 kb on + strand, within GFF474at 524.812 kb on + strand, within GFF474at 524.812 kb on + strand, within GFF474at 524.812 kb on + strand, within GFF474at 524.813 kb on - strand, within GFF474at 524.813 kb on - strand, within GFF474at 524.815 kb on - strand, within GFF474at 524.943 kb on + strand, within GFF474at 524.943 kb on + strand, within GFF474at 525.045 kb on + strand, within GFF474at 525.069 kb on + strand, within GFF474at 525.069 kb on + strand, within GFF474at 525.069 kb on + strand, within GFF474at 525.099 kb on + strand, within GFF474at 525.158 kb on + strand, within GFF474at 525.159 kb on - strand, within GFF474at 525.252 kb on + strand, within GFF474at 525.271 kb on + strand, within GFF474at 525.401 kb on + strand, within GFF474at 525.401 kb on + strand, within GFF474at 525.401 kb on + strand, within GFF474at 525.402 kb on - strand, within GFF474at 525.402 kb on - strand, within GFF474at 525.402 kb on - strand, within GFF474

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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522,717 - -0.7
522,836 - GFF472 0.21 -1.3
522,836 - GFF472 0.21 -1.1
522,851 - GFF472 0.23 -0.2
522,894 + GFF472 0.28 -1.1
522,895 - GFF472 0.28 -0.9
522,895 - GFF472 0.28 -0.1
522,895 - GFF472 0.28 -0.1
522,895 - GFF472 0.28 -1.1
522,920 - GFF472 0.31 -1.1
522,953 + GFF472 0.35 -1.1
522,953 + GFF472 0.35 -1.1
522,954 - GFF472 0.35 -1.7
522,954 - GFF472 0.35 -0.9
522,954 - GFF472 0.35 -1.9
522,954 - GFF472 0.35 -2.5
522,954 - GFF472 0.35 -1.4
522,954 - GFF472 0.35 -0.7
523,084 - GFF472 0.49 +0.3
523,084 - GFF472 0.49 -0.7
523,152 + GFF472 0.57 -2.9
523,153 - GFF472 0.57 -2.5
523,478 + -1.0
523,478 + -0.7
523,479 - -0.7
523,492 + -1.9
523,493 - -1.0
523,493 - -1.7
523,493 - -0.3
523,493 - -0.4
523,493 - -0.4
523,494 + -0.1
523,495 - -1.1
523,495 - -0.9
523,522 + -1.4
523,522 + -1.4
523,522 + -2.6
523,523 - -2.1
523,523 - -1.0
523,523 - -1.9
523,523 - -1.2
523,523 - -2.6
523,523 - -1.7
523,565 + -0.4
523,650 + -1.1
523,661 + -1.1
523,716 + -0.7
523,738 + -1.1
523,748 + +0.1
523,748 + -0.4
523,750 + -1.8
523,750 + -1.7
523,750 + -0.9
523,750 + -0.4
523,750 + -0.7
523,761 + -0.4
523,846 + GFF473 0.18 -2.1
523,846 + GFF473 0.18 -0.7
523,880 + GFF473 0.23 -2.4
523,880 + GFF473 0.23 -0.3
523,880 + GFF473 0.23 -1.1
523,880 + GFF473 0.23 -1.1
523,884 + GFF473 0.24 -1.1
523,884 + GFF473 0.24 -0.4
523,884 + GFF473 0.24 -1.4
523,929 + GFF473 0.30 -1.9
524,012 + GFF473 0.41 -1.5
524,099 + GFF473 0.53 -0.9
524,154 + GFF473 0.60 -0.8
524,221 + GFF473 0.69 -0.3
524,221 + GFF473 0.69 -0.1
524,221 + GFF473 0.69 -1.7
524,221 + GFF473 0.69 -1.6
524,221 + GFF473 0.69 -0.1
524,221 + GFF473 0.69 -1.6
524,230 + GFF473 0.71 +0.1
524,230 + GFF473 0.71 -2.0
524,230 + GFF473 0.71 -0.7
524,230 + GFF473 0.71 -1.4
524,230 + GFF473 0.71 +0.1
524,230 + GFF473 0.71 -0.7
524,230 + GFF473 0.71 -1.1
524,230 + GFF473 0.71 -0.1
524,230 + GFF473 0.71 -2.1
524,230 + GFF473 0.71 -2.4
524,249 + GFF473 0.73 -0.1
524,348 + GFF473 0.87 -0.4
524,376 + -0.1
524,396 + -1.3
524,425 + -1.3
524,425 + +0.1
524,425 + +0.1
524,425 + -0.9
524,425 + -1.3
524,425 + -1.0
524,425 + +2.1
524,426 - -0.1
524,583 + -1.1
524,584 - -2.7
524,584 - -0.9
524,621 + +0.1
524,621 + -0.3
524,621 + -0.5
524,621 + -0.1
524,621 + -0.4
524,621 + -0.9
524,621 + -1.8
524,668 + -2.6
524,669 - -0.4
524,739 - -2.3
524,749 + -0.9
524,806 + GFF474 0.14 -0.9
524,806 + GFF474 0.14 -2.6
524,807 - GFF474 0.14 -0.9
524,812 + GFF474 0.14 -2.1
524,812 + GFF474 0.14 +0.5
524,812 + GFF474 0.14 -1.5
524,812 + GFF474 0.14 -1.3
524,812 + GFF474 0.14 -2.8
524,813 - GFF474 0.15 -1.6
524,813 - GFF474 0.15 +0.6
524,815 - GFF474 0.15 +0.5
524,943 + GFF474 0.25 -1.1
524,943 + GFF474 0.25 -1.4
525,045 + GFF474 0.34 -0.7
525,069 + GFF474 0.36 +0.0
525,069 + GFF474 0.36 -3.1
525,069 + GFF474 0.36 -0.1
525,099 + GFF474 0.38 -1.6
525,158 + GFF474 0.43 -0.4
525,159 - GFF474 0.43 -2.5
525,252 + GFF474 0.51 -1.9
525,271 + GFF474 0.53 -0.1
525,401 + GFF474 0.63 +0.4
525,401 + GFF474 0.63 -1.1
525,401 + GFF474 0.63 -1.7
525,402 - GFF474 0.64 -2.1
525,402 - GFF474 0.64 -1.2
525,402 - GFF474 0.64 -2.1

Or see this region's nucleotide sequence