Strain Fitness in Methylophilus sp. DMC18 around GFF472

Experiment: D-Glucose and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF471 and GFF472 are separated by 9 nucleotidesGFF472 and GFF473 are separated by 181 nucleotides GFF471 - Beta-methylmalyl-CoA dehydratase, at 521,580 to 522,638 GFF471 GFF472 - (3S)-malyl-CoA thioesterase, at 522,648 to 523,529 GFF472 GFF473 - putative HTH-type transcriptional regulator YurK, at 523,711 to 524,445 GFF473 Position (kb) 522 523 524Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 522.666 kb on + strandat 522.688 kb on - strandat 522.717 kb on - strandat 522.836 kb on - strand, within GFF472at 522.836 kb on - strand, within GFF472at 522.851 kb on - strand, within GFF472at 522.894 kb on + strand, within GFF472at 522.895 kb on - strand, within GFF472at 522.895 kb on - strand, within GFF472at 522.895 kb on - strand, within GFF472at 522.895 kb on - strand, within GFF472at 522.920 kb on - strand, within GFF472at 522.953 kb on + strand, within GFF472at 522.953 kb on + strand, within GFF472at 522.954 kb on - strand, within GFF472at 522.954 kb on - strand, within GFF472at 522.954 kb on - strand, within GFF472at 522.954 kb on - strand, within GFF472at 522.954 kb on - strand, within GFF472at 522.954 kb on - strand, within GFF472at 523.084 kb on - strand, within GFF472at 523.084 kb on - strand, within GFF472at 523.152 kb on + strand, within GFF472at 523.153 kb on - strand, within GFF472at 523.478 kb on + strandat 523.478 kb on + strandat 523.479 kb on - strandat 523.492 kb on + strandat 523.493 kb on - strandat 523.493 kb on - strandat 523.493 kb on - strandat 523.493 kb on - strandat 523.493 kb on - strandat 523.494 kb on + strandat 523.495 kb on - strandat 523.495 kb on - strandat 523.522 kb on + strandat 523.522 kb on + strandat 523.522 kb on + strandat 523.523 kb on - strandat 523.523 kb on - strandat 523.523 kb on - strandat 523.523 kb on - strandat 523.523 kb on - strandat 523.523 kb on - strandat 523.565 kb on + strandat 523.650 kb on + strandat 523.661 kb on + strandat 523.716 kb on + strandat 523.738 kb on + strandat 523.748 kb on + strandat 523.748 kb on + strandat 523.750 kb on + strandat 523.750 kb on + strandat 523.750 kb on + strandat 523.750 kb on + strandat 523.750 kb on + strandat 523.761 kb on + strandat 523.846 kb on + strand, within GFF473at 523.846 kb on + strand, within GFF473at 523.880 kb on + strand, within GFF473at 523.880 kb on + strand, within GFF473at 523.880 kb on + strand, within GFF473at 523.880 kb on + strand, within GFF473at 523.884 kb on + strand, within GFF473at 523.884 kb on + strand, within GFF473at 523.884 kb on + strand, within GFF473at 523.929 kb on + strand, within GFF473at 524.012 kb on + strand, within GFF473at 524.099 kb on + strand, within GFF473at 524.154 kb on + strand, within GFF473at 524.221 kb on + strand, within GFF473at 524.221 kb on + strand, within GFF473at 524.221 kb on + strand, within GFF473at 524.221 kb on + strand, within GFF473at 524.221 kb on + strand, within GFF473at 524.221 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.230 kb on + strand, within GFF473at 524.249 kb on + strand, within GFF473at 524.348 kb on + strand, within GFF473at 524.376 kb on + strandat 524.396 kb on + strandat 524.425 kb on + strandat 524.425 kb on + strandat 524.425 kb on + strandat 524.425 kb on + strandat 524.425 kb on + strandat 524.425 kb on + strandat 524.425 kb on + strandat 524.426 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
remove
522,666 + -0.5
522,688 - -2.1
522,717 - -0.7
522,836 - GFF472 0.21 -1.3
522,836 - GFF472 0.21 -1.1
522,851 - GFF472 0.23 -0.2
522,894 + GFF472 0.28 -1.1
522,895 - GFF472 0.28 -0.9
522,895 - GFF472 0.28 -0.1
522,895 - GFF472 0.28 -0.1
522,895 - GFF472 0.28 -1.1
522,920 - GFF472 0.31 -1.1
522,953 + GFF472 0.35 -1.1
522,953 + GFF472 0.35 -1.1
522,954 - GFF472 0.35 -1.7
522,954 - GFF472 0.35 -0.9
522,954 - GFF472 0.35 -1.9
522,954 - GFF472 0.35 -2.5
522,954 - GFF472 0.35 -1.4
522,954 - GFF472 0.35 -0.7
523,084 - GFF472 0.49 +0.3
523,084 - GFF472 0.49 -0.7
523,152 + GFF472 0.57 -2.9
523,153 - GFF472 0.57 -2.5
523,478 + -1.0
523,478 + -0.7
523,479 - -0.7
523,492 + -1.9
523,493 - -1.0
523,493 - -1.7
523,493 - -0.3
523,493 - -0.4
523,493 - -0.4
523,494 + -0.1
523,495 - -1.1
523,495 - -0.9
523,522 + -1.4
523,522 + -1.4
523,522 + -2.6
523,523 - -2.1
523,523 - -1.0
523,523 - -1.9
523,523 - -1.2
523,523 - -2.6
523,523 - -1.7
523,565 + -0.4
523,650 + -1.1
523,661 + -1.1
523,716 + -0.7
523,738 + -1.1
523,748 + +0.1
523,748 + -0.4
523,750 + -1.8
523,750 + -1.7
523,750 + -0.9
523,750 + -0.4
523,750 + -0.7
523,761 + -0.4
523,846 + GFF473 0.18 -2.1
523,846 + GFF473 0.18 -0.7
523,880 + GFF473 0.23 -2.4
523,880 + GFF473 0.23 -0.3
523,880 + GFF473 0.23 -1.1
523,880 + GFF473 0.23 -1.1
523,884 + GFF473 0.24 -1.1
523,884 + GFF473 0.24 -0.4
523,884 + GFF473 0.24 -1.4
523,929 + GFF473 0.30 -1.9
524,012 + GFF473 0.41 -1.5
524,099 + GFF473 0.53 -0.9
524,154 + GFF473 0.60 -0.8
524,221 + GFF473 0.69 -0.3
524,221 + GFF473 0.69 -0.1
524,221 + GFF473 0.69 -1.7
524,221 + GFF473 0.69 -1.6
524,221 + GFF473 0.69 -0.1
524,221 + GFF473 0.69 -1.6
524,230 + GFF473 0.71 +0.1
524,230 + GFF473 0.71 -2.0
524,230 + GFF473 0.71 -0.7
524,230 + GFF473 0.71 -1.4
524,230 + GFF473 0.71 +0.1
524,230 + GFF473 0.71 -0.7
524,230 + GFF473 0.71 -1.1
524,230 + GFF473 0.71 -0.1
524,230 + GFF473 0.71 -2.1
524,230 + GFF473 0.71 -2.4
524,249 + GFF473 0.73 -0.1
524,348 + GFF473 0.87 -0.4
524,376 + -0.1
524,396 + -1.3
524,425 + -1.3
524,425 + +0.1
524,425 + +0.1
524,425 + -0.9
524,425 + -1.3
524,425 + -1.0
524,425 + +2.1
524,426 - -0.1

Or see this region's nucleotide sequence