Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF449 and GFF450 overlap by 22 nucleotides GFF450 and GFF451 are separated by 96 nucleotides GFF451 and GFF452 overlap by 4 nucleotides GFF452 and GFF453 are separated by 25 nucleotides
GFF449 - Protein-L-isoaspartate O-methyltransferase, at 489,645 to 490,361
GFF449
GFF450 - 5'-nucleotidase SurE, at 490,340 to 491,089
GFF450
GFF451 - hypothetical protein, at 491,186 to 491,548
GFF451
GFF452 - hypothetical protein, at 491,545 to 492,285
GFF452
GFF453 - NAD(P)H dehydrogenase (quinone), at 492,311 to 492,901
GFF453
Position (kb) 491
492 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 490.207 kb on - strand, within GFF449 at 490.341 kb on + strand at 490.341 kb on + strand at 490.342 kb on - strand at 490.342 kb on - strand at 490.342 kb on - strand at 490.599 kb on - strand, within GFF450 at 490.786 kb on - strand, within GFF450 at 491.101 kb on + strand at 491.101 kb on + strand at 491.101 kb on + strand at 491.101 kb on + strand at 491.102 kb on - strand at 491.102 kb on - strand at 491.102 kb on - strand at 491.102 kb on - strand at 491.102 kb on - strand at 491.103 kb on + strand at 491.103 kb on + strand at 491.103 kb on + strand at 491.103 kb on + strand at 491.104 kb on - strand at 491.104 kb on - strand at 491.104 kb on - strand at 491.104 kb on - strand at 491.224 kb on - strand, within GFF451 at 491.224 kb on - strand, within GFF451 at 491.224 kb on - strand, within GFF451 at 491.226 kb on - strand, within GFF451 at 491.332 kb on - strand, within GFF451 at 491.332 kb on - strand, within GFF451 at 491.332 kb on - strand, within GFF451 at 491.362 kb on - strand, within GFF451 at 491.362 kb on - strand, within GFF451 at 491.366 kb on - strand, within GFF451 at 491.366 kb on - strand, within GFF451 at 491.366 kb on - strand, within GFF451 at 491.366 kb on - strand, within GFF451 at 491.483 kb on + strand, within GFF451 at 491.483 kb on + strand, within GFF451 at 491.483 kb on + strand, within GFF451 at 491.484 kb on - strand, within GFF451 at 491.484 kb on - strand, within GFF451 at 491.484 kb on - strand, within GFF451 at 491.484 kb on - strand, within GFF451 at 491.484 kb on - strand, within GFF451 at 491.484 kb on - strand, within GFF451 at 491.484 kb on - strand, within GFF451 at 491.484 kb on - strand, within GFF451 at 491.484 kb on - strand, within GFF451 at 491.484 kb on - strand, within GFF451 at 491.484 kb on - strand, within GFF451 at 491.484 kb on - strand, within GFF451 at 491.484 kb on - strand, within GFF451 at 491.633 kb on - strand, within GFF452 at 491.661 kb on - strand, within GFF452 at 491.693 kb on - strand, within GFF452 at 491.739 kb on - strand, within GFF452 at 491.772 kb on + strand, within GFF452 at 491.772 kb on + strand, within GFF452 at 491.876 kb on + strand, within GFF452 at 491.904 kb on - strand, within GFF452 at 491.922 kb on + strand, within GFF452 at 491.923 kb on - strand, within GFF452 at 491.930 kb on + strand, within GFF452 at 491.930 kb on + strand, within GFF452 at 491.930 kb on + strand, within GFF452 at 491.931 kb on - strand, within GFF452 at 491.931 kb on - strand, within GFF452 at 491.951 kb on + strand, within GFF452 at 491.961 kb on - strand, within GFF452 at 491.961 kb on - strand, within GFF452 at 492.064 kb on + strand, within GFF452 at 492.064 kb on + strand, within GFF452 at 492.065 kb on - strand, within GFF452 at 492.090 kb on + strand, within GFF452 at 492.099 kb on + strand, within GFF452 at 492.099 kb on + strand, within GFF452 at 492.189 kb on - strand, within GFF452 at 492.261 kb on - strand at 492.285 kb on + strand at 492.286 kb on - strand at 492.286 kb on - strand at 492.286 kb on - strand at 492.286 kb on - strand at 492.290 kb on - strand at 492.290 kb on - strand at 492.362 kb on + strand at 492.363 kb on - strand at 492.363 kb on - strand at 492.445 kb on + strand, within GFF453 at 492.445 kb on + strand, within GFF453 at 492.446 kb on - strand, within GFF453 at 492.446 kb on - strand, within GFF453 at 492.488 kb on + strand, within GFF453 at 492.489 kb on - strand, within GFF453 at 492.489 kb on - strand, within GFF453
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 490,207 - GFF449 0.78 -0.8 490,341 + -0.1 490,341 + -0.0 490,342 - +0.1 490,342 - -0.6 490,342 - -0.7 490,599 - GFF450 0.35 -2.1 490,786 - GFF450 0.59 -0.1 491,101 + -0.1 491,101 + +0.2 491,101 + +0.4 491,101 + -0.2 491,102 - +0.1 491,102 - +0.6 491,102 - +0.0 491,102 - -1.0 491,102 - +1.1 491,103 + -1.1 491,103 + -1.1 491,103 + -0.8 491,103 + -1.1 491,104 - -1.1 491,104 - -0.4 491,104 - -0.7 491,104 - +1.1 491,224 - GFF451 0.10 -0.4 491,224 - GFF451 0.10 -0.1 491,224 - GFF451 0.10 -1.1 491,226 - GFF451 0.11 -1.7 491,332 - GFF451 0.40 -1.2 491,332 - GFF451 0.40 -0.1 491,332 - GFF451 0.40 -1.4 491,362 - GFF451 0.48 -2.1 491,362 - GFF451 0.48 -0.9 491,366 - GFF451 0.50 -1.1 491,366 - GFF451 0.50 +0.0 491,366 - GFF451 0.50 -0.9 491,366 - GFF451 0.50 -0.5 491,483 + GFF451 0.82 -0.1 491,483 + GFF451 0.82 -0.4 491,483 + GFF451 0.82 -1.9 491,484 - GFF451 0.82 -0.9 491,484 - GFF451 0.82 -0.4 491,484 - GFF451 0.82 -0.3 491,484 - GFF451 0.82 -0.1 491,484 - GFF451 0.82 -3.1 491,484 - GFF451 0.82 -2.8 491,484 - GFF451 0.82 -1.3 491,484 - GFF451 0.82 -0.7 491,484 - GFF451 0.82 -0.9 491,484 - GFF451 0.82 -0.7 491,484 - GFF451 0.82 +0.9 491,484 - GFF451 0.82 -1.1 491,484 - GFF451 0.82 -1.4 491,633 - GFF452 0.12 -1.0 491,661 - GFF452 0.16 -0.2 491,693 - GFF452 0.20 -0.8 491,739 - GFF452 0.26 -1.7 491,772 + GFF452 0.31 +0.9 491,772 + GFF452 0.31 +0.1 491,876 + GFF452 0.45 -1.4 491,904 - GFF452 0.48 -1.1 491,922 + GFF452 0.51 +0.7 491,923 - GFF452 0.51 -0.9 491,930 + GFF452 0.52 +0.4 491,930 + GFF452 0.52 -1.3 491,930 + GFF452 0.52 -1.3 491,931 - GFF452 0.52 -0.8 491,931 - GFF452 0.52 +0.1 491,951 + GFF452 0.55 -1.1 491,961 - GFF452 0.56 -0.4 491,961 - GFF452 0.56 -0.1 492,064 + GFF452 0.70 -1.1 492,064 + GFF452 0.70 -0.4 492,065 - GFF452 0.70 -0.3 492,090 + GFF452 0.74 -0.7 492,099 + GFF452 0.75 -0.1 492,099 + GFF452 0.75 +0.6 492,189 - GFF452 0.87 -0.4 492,261 - -1.4 492,285 + -0.9 492,286 - -1.4 492,286 - -0.4 492,286 - -0.9 492,286 - -1.2 492,290 - -0.4 492,290 - -0.1 492,362 + +0.2 492,363 - +0.6 492,363 - -0.5 492,445 + GFF453 0.23 -0.6 492,445 + GFF453 0.23 +0.5 492,446 - GFF453 0.23 -0.8 492,446 - GFF453 0.23 -1.4 492,488 + GFF453 0.30 -0.4 492,489 - GFF453 0.30 -0.5 492,489 - GFF453 0.30 -0.7
Or see this region's nucleotide sequence