Strain Fitness in Methylophilus sp. DMC18 around GFF392

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF391 and GFF392 are separated by 80 nucleotidesGFF392 and GFF393 are separated by 171 nucleotides GFF391 - Sulfate-binding protein, at 434,391 to 435,398 GFF391 GFF392 - hypothetical protein, at 435,479 to 435,757 GFF392 GFF393 - hypothetical protein, at 435,929 to 437,581 GFF393 Position (kb) 435 436Strain fitness (log2 ratio) -2 -1 0 1at 434.511 kb on + strand, within GFF391at 434.512 kb on - strand, within GFF391at 434.512 kb on - strand, within GFF391at 434.542 kb on - strand, within GFF391at 434.661 kb on + strand, within GFF391at 434.661 kb on + strand, within GFF391at 434.744 kb on + strand, within GFF391at 434.745 kb on - strand, within GFF391at 434.745 kb on - strand, within GFF391at 434.771 kb on + strand, within GFF391at 434.971 kb on + strand, within GFF391at 434.972 kb on - strand, within GFF391at 434.975 kb on + strand, within GFF391at 435.113 kb on + strand, within GFF391at 435.114 kb on - strand, within GFF391at 435.139 kb on + strand, within GFF391at 435.140 kb on - strand, within GFF391at 435.204 kb on + strand, within GFF391at 435.205 kb on - strand, within GFF391at 435.205 kb on - strand, within GFF391at 435.240 kb on + strand, within GFF391at 435.241 kb on - strand, within GFF391at 435.397 kb on - strandat 435.397 kb on - strandat 435.397 kb on - strandat 435.397 kb on - strandat 435.397 kb on - strandat 435.461 kb on - strandat 435.554 kb on - strand, within GFF392at 435.604 kb on - strand, within GFF392at 435.610 kb on + strand, within GFF392at 435.663 kb on - strand, within GFF392at 435.686 kb on - strand, within GFF392at 435.686 kb on - strand, within GFF392at 435.708 kb on - strand, within GFF392at 435.745 kb on - strandat 435.745 kb on - strandat 435.794 kb on - strandat 435.794 kb on - strandat 435.813 kb on + strandat 435.813 kb on + strandat 435.813 kb on + strandat 435.813 kb on + strandat 435.813 kb on + strandat 435.814 kb on - strandat 435.814 kb on - strandat 435.814 kb on - strandat 435.814 kb on - strandat 435.814 kb on - strandat 435.814 kb on - strandat 435.815 kb on + strandat 435.815 kb on + strandat 435.815 kb on + strandat 435.824 kb on + strandat 435.851 kb on - strandat 435.857 kb on + strandat 435.857 kb on + strandat 435.858 kb on - strandat 435.994 kb on + strandat 435.994 kb on + strandat 436.020 kb on + strandat 436.031 kb on - strandat 436.071 kb on + strandat 436.071 kb on + strandat 436.085 kb on + strandat 436.085 kb on + strandat 436.085 kb on + strandat 436.085 kb on + strandat 436.086 kb on - strandat 436.098 kb on + strand, within GFF393at 436.099 kb on - strand, within GFF393at 436.099 kb on - strand, within GFF393at 436.099 kb on - strand, within GFF393at 436.099 kb on - strand, within GFF393at 436.102 kb on + strand, within GFF393at 436.102 kb on + strand, within GFF393at 436.102 kb on + strand, within GFF393at 436.103 kb on - strand, within GFF393at 436.108 kb on + strand, within GFF393at 436.108 kb on + strand, within GFF393at 436.108 kb on + strand, within GFF393at 436.133 kb on + strand, within GFF393at 436.157 kb on + strand, within GFF393at 436.158 kb on - strand, within GFF393at 436.158 kb on - strand, within GFF393at 436.158 kb on - strand, within GFF393at 436.158 kb on - strand, within GFF393at 436.250 kb on + strand, within GFF393at 436.250 kb on + strand, within GFF393at 436.250 kb on + strand, within GFF393at 436.251 kb on - strand, within GFF393at 436.324 kb on + strand, within GFF393at 436.325 kb on - strand, within GFF393at 436.325 kb on - strand, within GFF393at 436.336 kb on + strand, within GFF393at 436.397 kb on + strand, within GFF393at 436.397 kb on + strand, within GFF393at 436.398 kb on - strand, within GFF393at 436.398 kb on - strand, within GFF393at 436.398 kb on - strand, within GFF393at 436.398 kb on - strand, within GFF393at 436.458 kb on + strand, within GFF393at 436.459 kb on - strand, within GFF393at 436.459 kb on - strand, within GFF393at 436.487 kb on + strand, within GFF393at 436.621 kb on + strand, within GFF393at 436.621 kb on - strand, within GFF393at 436.632 kb on + strand, within GFF393at 436.632 kb on + strand, within GFF393at 436.636 kb on + strand, within GFF393at 436.636 kb on + strand, within GFF393at 436.636 kb on + strand, within GFF393at 436.684 kb on + strand, within GFF393at 436.685 kb on - strand, within GFF393at 436.733 kb on + strand, within GFF393at 436.733 kb on + strand, within GFF393at 436.733 kb on + strand, within GFF393at 436.733 kb on + strand, within GFF393at 436.733 kb on + strand, within GFF393at 436.734 kb on - strand, within GFF393at 436.735 kb on + strand, within GFF393at 436.751 kb on + strand, within GFF393at 436.751 kb on + strand, within GFF393at 436.751 kb on + strand, within GFF393at 436.751 kb on + strand, within GFF393at 436.752 kb on - strand, within GFF393at 436.752 kb on - strand, within GFF393at 436.752 kb on - strand, within GFF393at 436.752 kb on - strand, within GFF393at 436.752 kb on - strand, within GFF393at 436.752 kb on - strand, within GFF393at 436.752 kb on - strand, within GFF393at 436.754 kb on + strand, within GFF393at 436.754 kb on + strand, within GFF393at 436.755 kb on - strand, within GFF393at 436.755 kb on - strand, within GFF393at 436.755 kb on - strand, within GFF393at 436.755 kb on - strand, within GFF393

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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434,511 + GFF391 0.12 -0.9
434,512 - GFF391 0.12 -1.2
434,512 - GFF391 0.12 -1.2
434,542 - GFF391 0.15 +0.3
434,661 + GFF391 0.27 +0.2
434,661 + GFF391 0.27 -0.4
434,744 + GFF391 0.35 -0.5
434,745 - GFF391 0.35 -0.4
434,745 - GFF391 0.35 -0.5
434,771 + GFF391 0.38 -0.1
434,971 + GFF391 0.58 -1.3
434,972 - GFF391 0.58 -0.6
434,975 + GFF391 0.58 -0.1
435,113 + GFF391 0.72 +0.1
435,114 - GFF391 0.72 +0.5
435,139 + GFF391 0.74 -1.7
435,140 - GFF391 0.74 +1.2
435,204 + GFF391 0.81 -2.1
435,205 - GFF391 0.81 -1.1
435,205 - GFF391 0.81 -0.2
435,240 + GFF391 0.84 +0.1
435,241 - GFF391 0.84 +0.2
435,397 - +0.1
435,397 - -0.7
435,397 - -1.4
435,397 - -1.4
435,397 - -0.5
435,461 - -1.5
435,554 - GFF392 0.27 -1.9
435,604 - GFF392 0.45 -1.4
435,610 + GFF392 0.47 -0.4
435,663 - GFF392 0.66 -1.2
435,686 - GFF392 0.74 -0.2
435,686 - GFF392 0.74 -1.3
435,708 - GFF392 0.82 -1.1
435,745 - -0.4
435,745 - -1.1
435,794 - -0.9
435,794 - -0.7
435,813 + +0.3
435,813 + -0.1
435,813 + -1.1
435,813 + -0.1
435,813 + -0.9
435,814 - -0.1
435,814 - +0.2
435,814 - +1.7
435,814 - +0.2
435,814 - +0.1
435,814 - +0.9
435,815 + -0.1
435,815 + +0.9
435,815 + +0.6
435,824 + +0.5
435,851 - -0.6
435,857 + +0.3
435,857 + +0.4
435,858 - -1.1
435,994 + +1.3
435,994 + +0.2
436,020 + -1.8
436,031 - +0.3
436,071 + +0.2
436,071 + -0.5
436,085 + +0.9
436,085 + -0.1
436,085 + +0.9
436,085 + -1.1
436,086 - -1.5
436,098 + GFF393 0.10 -0.7
436,099 - GFF393 0.10 -0.1
436,099 - GFF393 0.10 +0.7
436,099 - GFF393 0.10 -1.1
436,099 - GFF393 0.10 +0.7
436,102 + GFF393 0.10 -1.1
436,102 + GFF393 0.10 -0.7
436,102 + GFF393 0.10 -0.5
436,103 - GFF393 0.11 -0.6
436,108 + GFF393 0.11 -0.9
436,108 + GFF393 0.11 -0.2
436,108 + GFF393 0.11 +0.9
436,133 + GFF393 0.12 -0.9
436,157 + GFF393 0.14 -1.9
436,158 - GFF393 0.14 -0.5
436,158 - GFF393 0.14 -0.3
436,158 - GFF393 0.14 +0.5
436,158 - GFF393 0.14 -1.2
436,250 + GFF393 0.19 -1.1
436,250 + GFF393 0.19 +0.9
436,250 + GFF393 0.19 +1.3
436,251 - GFF393 0.19 +0.3
436,324 + GFF393 0.24 -1.1
436,325 - GFF393 0.24 -0.7
436,325 - GFF393 0.24 -0.4
436,336 + GFF393 0.25 -0.4
436,397 + GFF393 0.28 +0.2
436,397 + GFF393 0.28 -0.5
436,398 - GFF393 0.28 -0.7
436,398 - GFF393 0.28 +0.5
436,398 - GFF393 0.28 +0.4
436,398 - GFF393 0.28 -0.3
436,458 + GFF393 0.32 +0.3
436,459 - GFF393 0.32 -1.2
436,459 - GFF393 0.32 -1.4
436,487 + GFF393 0.34 +0.3
436,621 + GFF393 0.42 -0.4
436,621 - GFF393 0.42 -1.3
436,632 + GFF393 0.43 -0.2
436,632 + GFF393 0.43 -0.3
436,636 + GFF393 0.43 +0.4
436,636 + GFF393 0.43 +0.9
436,636 + GFF393 0.43 +0.2
436,684 + GFF393 0.46 -1.5
436,685 - GFF393 0.46 -0.7
436,733 + GFF393 0.49 -0.5
436,733 + GFF393 0.49 -0.7
436,733 + GFF393 0.49 +0.4
436,733 + GFF393 0.49 -0.4
436,733 + GFF393 0.49 -0.5
436,734 - GFF393 0.49 +0.4
436,735 + GFF393 0.49 -0.5
436,751 + GFF393 0.50 -0.9
436,751 + GFF393 0.50 -0.3
436,751 + GFF393 0.50 +0.2
436,751 + GFF393 0.50 -0.1
436,752 - GFF393 0.50 -1.2
436,752 - GFF393 0.50 +0.2
436,752 - GFF393 0.50 -0.3
436,752 - GFF393 0.50 -0.3
436,752 - GFF393 0.50 -0.1
436,752 - GFF393 0.50 -0.5
436,752 - GFF393 0.50 -0.3
436,754 + GFF393 0.50 -2.4
436,754 + GFF393 0.50 +0.5
436,755 - GFF393 0.50 +0.2
436,755 - GFF393 0.50 -1.1
436,755 - GFF393 0.50 +0.9
436,755 - GFF393 0.50 -0.6

Or see this region's nucleotide sequence