Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF360 and GFF361 overlap by 4 nucleotides GFF361 and GFF362 are separated by 247 nucleotides
GFF360 - RecBCD enzyme subunit RecB, at 390,514 to 393,915
GFF360
GFF361 - ATP-dependent helicase/deoxyribonuclease subunit B, at 393,912 to 396,653
GFF361
GFF362 - hypothetical protein, at 396,901 to 402,891
GFF362
Position (kb) 393
394
395
396
397 Strain fitness (log2 ratio) -2
-1
0
1 at 393.218 kb on - strand, within GFF360 at 393.339 kb on + strand, within GFF360 at 393.339 kb on + strand, within GFF360 at 393.340 kb on - strand, within GFF360 at 393.342 kb on - strand, within GFF360 at 393.503 kb on - strand, within GFF360 at 393.503 kb on - strand, within GFF360 at 393.733 kb on + strand at 393.770 kb on - strand at 394.018 kb on - strand at 394.021 kb on - strand at 394.167 kb on - strand at 394.167 kb on - strand at 394.167 kb on - strand at 394.167 kb on - strand at 394.759 kb on + strand, within GFF361 at 394.994 kb on - strand, within GFF361 at 395.511 kb on + strand, within GFF361 at 395.512 kb on - strand, within GFF361 at 395.562 kb on - strand, within GFF361 at 395.665 kb on + strand, within GFF361 at 395.795 kb on - strand, within GFF361 at 396.132 kb on + strand, within GFF361 at 396.551 kb on - strand at 396.695 kb on + strand at 396.695 kb on + strand at 396.695 kb on + strand at 396.695 kb on + strand at 396.695 kb on + strand at 396.695 kb on + strand at 396.695 kb on + strand at 396.696 kb on - strand at 396.696 kb on - strand at 396.696 kb on - strand at 396.696 kb on - strand at 396.696 kb on - strand at 396.696 kb on - strand at 396.885 kb on + strand at 396.889 kb on - strand at 396.889 kb on - strand at 396.901 kb on - strand at 397.037 kb on + strand at 397.037 kb on + strand at 397.037 kb on + strand at 397.038 kb on - strand at 397.038 kb on - strand at 397.038 kb on - strand at 397.038 kb on - strand at 397.038 kb on - strand at 397.231 kb on + strand at 397.390 kb on + strand at 397.390 kb on + strand at 397.390 kb on + strand at 397.390 kb on + strand at 397.391 kb on - strand at 397.391 kb on - strand at 397.392 kb on + strand at 397.392 kb on + strand at 397.535 kb on + strand, within GFF362 at 397.536 kb on - strand, within GFF362 at 397.536 kb on - strand, within GFF362 at 397.536 kb on - strand, within GFF362 at 397.626 kb on + strand, within GFF362 at 397.641 kb on + strand, within GFF362
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 393,218 - GFF360 0.79 -0.1 393,339 + GFF360 0.83 -1.1 393,339 + GFF360 0.83 -1.4 393,340 - GFF360 0.83 -2.6 393,342 - GFF360 0.83 -0.1 393,503 - GFF360 0.88 -1.1 393,503 - GFF360 0.88 -0.4 393,733 + -0.4 393,770 - -0.1 394,018 - -0.4 394,021 - +0.5 394,167 - -2.4 394,167 - -0.5 394,167 - +0.9 394,167 - -1.1 394,759 + GFF361 0.31 -1.1 394,994 - GFF361 0.39 -0.1 395,511 + GFF361 0.58 -0.1 395,512 - GFF361 0.58 -1.9 395,562 - GFF361 0.60 -1.4 395,665 + GFF361 0.64 -1.1 395,795 - GFF361 0.69 -1.4 396,132 + GFF361 0.81 -0.4 396,551 - -1.9 396,695 + -1.0 396,695 + +1.5 396,695 + -1.4 396,695 + +0.1 396,695 + -1.4 396,695 + +0.9 396,695 + -0.6 396,696 - +0.1 396,696 - +0.1 396,696 - -0.5 396,696 - +0.6 396,696 - -1.1 396,696 - -2.1 396,885 + -0.1 396,889 - -1.8 396,889 - +0.7 396,901 - -1.9 397,037 + -1.4 397,037 + +0.1 397,037 + -0.5 397,038 - -1.4 397,038 - -1.6 397,038 - -1.1 397,038 - -0.1 397,038 - -0.6 397,231 + -0.9 397,390 + -0.8 397,390 + -0.1 397,390 + -1.5 397,390 + -1.2 397,391 - -0.6 397,391 - -0.3 397,392 + -1.1 397,392 + -0.1 397,535 + GFF362 0.11 -0.8 397,536 - GFF362 0.11 -1.4 397,536 - GFF362 0.11 -0.4 397,536 - GFF362 0.11 +0.2 397,626 + GFF362 0.12 +0.2 397,641 + GFF362 0.12 -1.1
Or see this region's nucleotide sequence