Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF358 and GFF359 are separated by 164 nucleotides GFF359 and GFF360 are separated by 10 nucleotides GFF360 and GFF361 overlap by 4 nucleotides
GFF358 - hypothetical protein, at 389,437 to 389,679
GFF358
GFF359 - Putative NAD(P)H nitroreductase, at 389,844 to 390,503
GFF359
GFF360 - RecBCD enzyme subunit RecB, at 390,514 to 393,915
GFF360
GFF361 - ATP-dependent helicase/deoxyribonuclease subunit B, at 393,912 to 396,653
GFF361
Position (kb) 390
391
392
393
394 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 389.522 kb on - strand, within GFF358 at 389.522 kb on - strand, within GFF358 at 389.552 kb on + strand, within GFF358 at 389.552 kb on + strand, within GFF358 at 389.553 kb on - strand, within GFF358 at 389.553 kb on - strand, within GFF358 at 389.553 kb on - strand, within GFF358 at 389.553 kb on - strand, within GFF358 at 389.556 kb on + strand, within GFF358 at 389.556 kb on + strand, within GFF358 at 389.556 kb on + strand, within GFF358 at 389.556 kb on + strand, within GFF358 at 389.556 kb on + strand, within GFF358 at 389.556 kb on + strand, within GFF358 at 389.556 kb on + strand, within GFF358 at 389.556 kb on + strand, within GFF358 at 389.556 kb on + strand, within GFF358 at 389.556 kb on + strand, within GFF358 at 389.556 kb on + strand, within GFF358 at 389.556 kb on + strand, within GFF358 at 389.557 kb on - strand, within GFF358 at 389.557 kb on - strand, within GFF358 at 389.557 kb on - strand, within GFF358 at 389.557 kb on - strand, within GFF358 at 389.557 kb on - strand, within GFF358 at 389.557 kb on - strand, within GFF358 at 389.557 kb on - strand, within GFF358 at 389.658 kb on + strand at 389.659 kb on - strand at 389.659 kb on - strand at 389.693 kb on - strand at 389.693 kb on - strand at 389.693 kb on - strand at 389.693 kb on - strand at 389.696 kb on + strand at 389.697 kb on - strand at 389.714 kb on + strand at 389.714 kb on + strand at 389.715 kb on - strand at 389.715 kb on - strand at 389.715 kb on - strand at 389.736 kb on + strand at 389.736 kb on + strand at 389.736 kb on + strand at 389.736 kb on + strand at 389.736 kb on + strand at 389.737 kb on - strand at 389.737 kb on - strand at 389.737 kb on - strand at 389.740 kb on + strand at 389.794 kb on + strand at 389.794 kb on + strand at 389.794 kb on + strand at 389.795 kb on - strand at 389.795 kb on - strand at 389.795 kb on - strand at 389.795 kb on - strand at 389.795 kb on - strand at 389.795 kb on - strand at 389.806 kb on + strand at 389.806 kb on + strand at 389.806 kb on + strand at 389.807 kb on - strand at 389.807 kb on - strand at 389.835 kb on + strand at 389.836 kb on - strand at 389.839 kb on + strand at 389.840 kb on - strand at 389.840 kb on - strand at 389.840 kb on - strand at 389.840 kb on - strand at 389.840 kb on - strand at 389.840 kb on - strand at 389.859 kb on + strand at 389.859 kb on + strand at 389.859 kb on + strand at 389.859 kb on + strand at 389.859 kb on + strand at 389.860 kb on - strand at 389.860 kb on - strand at 389.924 kb on + strand, within GFF359 at 389.925 kb on - strand, within GFF359 at 389.926 kb on + strand, within GFF359 at 389.926 kb on + strand, within GFF359 at 389.926 kb on + strand, within GFF359 at 389.926 kb on + strand, within GFF359 at 389.927 kb on - strand, within GFF359 at 389.927 kb on - strand, within GFF359 at 389.927 kb on - strand, within GFF359 at 389.927 kb on - strand, within GFF359 at 389.927 kb on - strand, within GFF359 at 389.927 kb on - strand, within GFF359 at 389.996 kb on + strand, within GFF359 at 389.996 kb on + strand, within GFF359 at 389.996 kb on + strand, within GFF359 at 389.997 kb on - strand, within GFF359 at 390.067 kb on + strand, within GFF359 at 390.067 kb on + strand, within GFF359 at 390.068 kb on - strand, within GFF359 at 390.068 kb on - strand, within GFF359 at 390.143 kb on - strand, within GFF359 at 390.143 kb on - strand, within GFF359 at 390.143 kb on - strand, within GFF359 at 390.212 kb on - strand, within GFF359 at 390.332 kb on + strand, within GFF359 at 390.332 kb on + strand, within GFF359 at 390.333 kb on - strand, within GFF359 at 390.347 kb on + strand, within GFF359 at 390.348 kb on - strand, within GFF359 at 390.453 kb on - strand at 390.494 kb on + strand at 390.494 kb on + strand at 390.494 kb on + strand at 390.494 kb on + strand at 390.494 kb on + strand at 390.495 kb on - strand at 390.495 kb on - strand at 390.495 kb on - strand at 390.498 kb on + strand at 390.499 kb on - strand at 390.499 kb on - strand at 390.499 kb on - strand at 390.551 kb on - strand at 390.605 kb on + strand at 390.647 kb on - strand at 390.647 kb on - strand at 390.647 kb on - strand at 390.647 kb on - strand at 390.681 kb on - strand at 390.697 kb on + strand at 390.697 kb on + strand at 390.698 kb on - strand at 390.717 kb on + strand at 390.718 kb on - strand at 390.725 kb on - strand at 390.736 kb on - strand at 390.986 kb on + strand, within GFF360 at 391.058 kb on + strand, within GFF360 at 391.058 kb on + strand, within GFF360 at 391.059 kb on - strand, within GFF360 at 391.185 kb on + strand, within GFF360 at 391.185 kb on + strand, within GFF360 at 391.186 kb on - strand, within GFF360 at 391.209 kb on + strand, within GFF360 at 391.332 kb on - strand, within GFF360 at 391.332 kb on - strand, within GFF360 at 391.392 kb on - strand, within GFF360 at 391.739 kb on - strand, within GFF360 at 392.672 kb on - strand, within GFF360 at 392.672 kb on - strand, within GFF360 at 393.218 kb on - strand, within GFF360 at 393.339 kb on + strand, within GFF360 at 393.339 kb on + strand, within GFF360 at 393.340 kb on - strand, within GFF360 at 393.342 kb on - strand, within GFF360 at 393.503 kb on - strand, within GFF360 at 393.503 kb on - strand, within GFF360 at 393.733 kb on + strand at 393.770 kb on - strand at 394.018 kb on - strand at 394.021 kb on - strand at 394.167 kb on - strand at 394.167 kb on - strand at 394.167 kb on - strand at 394.167 kb on - strand at 394.759 kb on + strand, within GFF361
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 389,522 - GFF358 0.35 -1.8 389,522 - GFF358 0.35 -1.9 389,552 + GFF358 0.47 +0.1 389,552 + GFF358 0.47 -0.5 389,553 - GFF358 0.48 -0.1 389,553 - GFF358 0.48 +0.5 389,553 - GFF358 0.48 -0.6 389,553 - GFF358 0.48 -1.3 389,556 + GFF358 0.49 -1.1 389,556 + GFF358 0.49 +0.2 389,556 + GFF358 0.49 -0.8 389,556 + GFF358 0.49 +0.7 389,556 + GFF358 0.49 -0.1 389,556 + GFF358 0.49 +0.2 389,556 + GFF358 0.49 -0.5 389,556 + GFF358 0.49 -0.9 389,556 + GFF358 0.49 -1.1 389,556 + GFF358 0.49 -2.1 389,556 + GFF358 0.49 -0.8 389,556 + GFF358 0.49 -0.7 389,557 - GFF358 0.49 -0.2 389,557 - GFF358 0.49 +0.8 389,557 - GFF358 0.49 +1.0 389,557 - GFF358 0.49 -0.2 389,557 - GFF358 0.49 -1.1 389,557 - GFF358 0.49 -0.8 389,557 - GFF358 0.49 -1.3 389,658 + -2.1 389,659 - -0.4 389,659 - -0.5 389,693 - -1.2 389,693 - +0.7 389,693 - -1.8 389,693 - +0.6 389,696 + -0.2 389,697 - -3.2 389,714 + +0.0 389,714 + +0.4 389,715 - -0.1 389,715 - -2.2 389,715 - +0.0 389,736 + -0.3 389,736 + -0.6 389,736 + -0.8 389,736 + +0.0 389,736 + -0.9 389,737 - -1.5 389,737 - -0.1 389,737 - +0.5 389,740 + +0.0 389,794 + -0.4 389,794 + -0.8 389,794 + +0.7 389,795 - -1.2 389,795 - +0.3 389,795 - -1.6 389,795 - -0.4 389,795 - -0.4 389,795 - +0.2 389,806 + -1.9 389,806 + -0.4 389,806 + -0.4 389,807 - -1.1 389,807 - -1.8 389,835 + -1.4 389,836 - -0.9 389,839 + -0.1 389,840 - -1.4 389,840 - -1.4 389,840 - +0.1 389,840 - -1.1 389,840 - -0.8 389,840 - -0.5 389,859 + -0.1 389,859 + -0.3 389,859 + -1.5 389,859 + -1.9 389,859 + -0.6 389,860 - +0.9 389,860 - -1.9 389,924 + GFF359 0.12 -1.6 389,925 - GFF359 0.12 -0.6 389,926 + GFF359 0.12 -0.5 389,926 + GFF359 0.12 -0.4 389,926 + GFF359 0.12 -0.5 389,926 + GFF359 0.12 +0.7 389,927 - GFF359 0.13 -0.4 389,927 - GFF359 0.13 -0.1 389,927 - GFF359 0.13 -1.8 389,927 - GFF359 0.13 -1.6 389,927 - GFF359 0.13 -0.6 389,927 - GFF359 0.13 -1.1 389,996 + GFF359 0.23 -1.6 389,996 + GFF359 0.23 -1.1 389,996 + GFF359 0.23 -1.6 389,997 - GFF359 0.23 -0.6 390,067 + GFF359 0.34 -0.7 390,067 + GFF359 0.34 +0.4 390,068 - GFF359 0.34 -0.3 390,068 - GFF359 0.34 -0.4 390,143 - GFF359 0.45 -0.6 390,143 - GFF359 0.45 -1.9 390,143 - GFF359 0.45 -1.2 390,212 - GFF359 0.56 -0.2 390,332 + GFF359 0.74 -0.5 390,332 + GFF359 0.74 +0.1 390,333 - GFF359 0.74 +0.5 390,347 + GFF359 0.76 -0.1 390,348 - GFF359 0.76 -1.0 390,453 - -1.4 390,494 + +0.9 390,494 + -0.8 390,494 + +0.0 390,494 + -0.3 390,494 + -0.1 390,495 - +0.9 390,495 - +0.3 390,495 - -2.4 390,498 + +0.9 390,499 - -0.6 390,499 - -0.6 390,499 - +0.2 390,551 - +0.7 390,605 + -1.1 390,647 - +0.2 390,647 - -0.0 390,647 - -0.1 390,647 - -0.4 390,681 - -1.1 390,697 + -1.1 390,697 + -0.8 390,698 - +0.9 390,717 + +0.2 390,718 - +0.7 390,725 - -0.4 390,736 - -1.4 390,986 + GFF360 0.14 -1.1 391,058 + GFF360 0.16 -1.4 391,058 + GFF360 0.16 -1.1 391,059 - GFF360 0.16 -1.8 391,185 + GFF360 0.20 -1.6 391,185 + GFF360 0.20 -1.1 391,186 - GFF360 0.20 -1.4 391,209 + GFF360 0.20 -0.1 391,332 - GFF360 0.24 -1.1 391,332 - GFF360 0.24 +0.2 391,392 - GFF360 0.26 -1.9 391,739 - GFF360 0.36 -0.4 392,672 - GFF360 0.63 +0.2 392,672 - GFF360 0.63 -1.1 393,218 - GFF360 0.79 -0.1 393,339 + GFF360 0.83 -1.1 393,339 + GFF360 0.83 -1.4 393,340 - GFF360 0.83 -2.6 393,342 - GFF360 0.83 -0.1 393,503 - GFF360 0.88 -1.1 393,503 - GFF360 0.88 -0.4 393,733 + -0.4 393,770 - -0.1 394,018 - -0.4 394,021 - +0.5 394,167 - -2.4 394,167 - -0.5 394,167 - +0.9 394,167 - -1.1 394,759 + GFF361 0.31 -1.1
Or see this region's nucleotide sequence