Strain Fitness in Methylophilus sp. DMC18 around GFF2843

Experiment: D-Glucose and casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose and casaminos (C)
78,681	+				+0.1
78,681	+				-0.5
78,682	-				-2.1
78,682	-				+0.5
78,682	-				-1.3
78,684	+				-0.7
78,684	+				-1.9
78,684	+				-0.7
78,684	+				-0.3
78,684	+				-1.9
78,685	-				+0.6
78,685	-				-0.5
78,685	-				-0.9
78,685	-				-1.9
78,696	-				+0.5
78,722	-				-0.8
78,745	+				+1.1
78,746	-				-0.5
78,792	+				-0.1
78,792	+				+0.4
78,792	+				-1.1
78,793	-				-0.9
78,793	-				-0.9
78,793	-				+0.5
78,828	+		GFF2842	0.20	+0.1
78,849	-		GFF2842	0.28	-0.5
78,849	-		GFF2842	0.28	-1.3
78,852	+		GFF2842	0.29	-0.6
78,852	+		GFF2842	0.29	+0.1
78,852	+		GFF2842	0.29	+0.6
78,852	+		GFF2842	0.29	-2.3
78,852	+		GFF2842	0.29	+0.5
78,853	-		GFF2842	0.29	+0.1
78,853	-		GFF2842	0.29	-2.1
78,853	-		GFF2842	0.29	-1.0
78,853	-		GFF2842	0.29	-0.5
78,853	-		GFF2842	0.29	+0.1
78,853	-		GFF2842	0.29	-0.3
78,853	-		GFF2842	0.29	-0.5
78,856	+		GFF2842	0.30	+0.1
78,856	+		GFF2842	0.30	-0.3
78,856	+		GFF2842	0.30	-1.2
78,856	+		GFF2842	0.30	-1.3
78,856	+		GFF2842	0.30	+0.3
78,856	+		GFF2842	0.30	+0.1
78,857	-		GFF2842	0.31	+1.4
78,857	-		GFF2842	0.31	-1.3
78,857	-		GFF2842	0.31	+0.8
78,857	-		GFF2842	0.31	+0.6
78,857	-		GFF2842	0.31	-1.4
78,857	-		GFF2842	0.31	-0.5
78,857	-		GFF2842	0.31	-0.9
78,857	-		GFF2842	0.31	+0.1
78,857	-		GFF2842	0.31	-1.6
78,952	+		GFF2842	0.66	-2.1
78,952	+		GFF2842	0.66	-1.5
78,952	+		GFF2842	0.66	+0.1
78,952	+		GFF2842	0.66	-0.9
78,953	-		GFF2842	0.66	-0.5
78,953	-		GFF2842	0.66	-1.5
78,953	-		GFF2842	0.66	+0.7
78,953	-		GFF2842	0.66	-0.7
78,953	-		GFF2842	0.66	+0.1
78,953	-		GFF2842	0.66	-0.5
78,954	+		GFF2842	0.66	-1.4
78,954	+		GFF2842	0.66	-1.3
78,955	-		GFF2842	0.67	-0.5
78,955	-		GFF2842	0.67	-1.1
78,955	-		GFF2842	0.67	-0.8
78,955	-		GFF2842	0.67	+1.4
78,955	-		GFF2842	0.67	-0.4
78,982	-		GFF2842	0.77	-1.1
79,059	+				-0.9
79,060	-				-0.8
79,060	-				+0.4
79,060	-				-0.3
79,060	-				-0.1
79,060	-				-0.5
79,068	-				-2.3
79,082	-				-1.5
79,082	-				-0.9
79,091	+				-0.8
79,091	+				-0.8
79,091	+				-0.4
79,092	-				-3.6
79,113	+				-1.0
79,119	+				+0.1
79,236	+		GFF2843	0.28	-0.5
79,236	+		GFF2843	0.28	+0.1
79,236	+		GFF2843	0.28	-1.7
79,236	+		GFF2843	0.28	-2.9
79,285	+		GFF2843	0.40	-1.3
79,518	+				+0.1
79,537	+				+0.1
79,537	+				-0.9
79,537	+				-2.2
79,537	+				-0.3
79,604	+				+1.1
79,605	-				-0.9
79,618	-				-0.3
79,744	+				-0.9
79,746	+				+0.2
79,746	+				-0.5
79,746	+				-0.1
79,746	+				+0.4
79,746	+				+0.8
79,746	+				-0.7
79,746	+				+0.2
79,746	+				-1.1
79,747	-				+0.7
79,747	-				-1.3
79,747	-				-1.8
79,747	-				-0.5
79,747	-				-0.8
79,747	-				-2.3
79,764	+				-1.8
79,764	+				-0.2
79,764	+				-1.8
79,764	+				-0.9
79,764	+				+0.3
79,765	-				-1.3
79,765	-				-0.8
79,765	-				-0.1
79,765	-				+0.2
79,765	-				+0.1
79,765	-				-2.1
79,765	-				+0.4
79,765	-				-1.4
79,789	+				+0.6
79,791	+				-0.9
79,791	+				-1.5
79,791	+				-0.8
79,791	+				-1.8
79,791	+				-0.6
79,792	-				-1.9
79,826	-		GFF2844	0.10	-1.5
79,926	+		GFF2844	0.15	-0.8
79,926	+		GFF2844	0.15	+0.9
79,926	+		GFF2844	0.15	-0.9
79,927	-		GFF2844	0.15	-1.6
79,927	-		GFF2844	0.15	-0.2
79,927	-		GFF2844	0.15	-0.9
79,936	+		GFF2844	0.16	+0.7
79,936	+		GFF2844	0.16	+0.1
79,936	+		GFF2844	0.16	-1.6
79,937	-		GFF2844	0.16	-0.2
79,959	+		GFF2844	0.17	+0.6
79,960	-		GFF2844	0.17	+0.1
79,960	-		GFF2844	0.17	-0.9
79,960	-		GFF2844	0.17	-0.8
80,048	-		GFF2844	0.21	-1.5
80,098	+		GFF2844	0.24	-1.1
80,098	+		GFF2844	0.24	-1.2
80,099	-		GFF2844	0.24	+0.2
80,099	-		GFF2844	0.24	-0.9
80,101	+		GFF2844	0.24	-0.3
80,102	-		GFF2844	0.24	-2.0
80,136	+		GFF2844	0.26	-1.3
80,136	+		GFF2844	0.26	+0.1
80,137	-		GFF2844	0.26	+0.1
80,145	-		GFF2844	0.26	-0.6
80,218	+		GFF2844	0.30	-1.3
80,221	+		GFF2844	0.30	+0.1
80,221	+		GFF2844	0.30	-0.4
80,221	+		GFF2844	0.30	-0.5
80,222	-		GFF2844	0.30	+0.1
80,222	-		GFF2844	0.30	-0.8
80,222	-		GFF2844	0.30	-1.8
80,251	+		GFF2844	0.31	-1.5
80,251	+		GFF2844	0.31	-1.3
80,251	+		GFF2844	0.31	+0.1
80,251	+		GFF2844	0.31	-0.6
80,252	-		GFF2844	0.31	+0.1
80,252	-		GFF2844	0.31	+0.1
80,268	+		GFF2844	0.32	-0.4
80,269	-		GFF2844	0.32	-2.4
80,280	+		GFF2844	0.33	-1.9
80,281	-		GFF2844	0.33	+0.6
80,281	-		GFF2844	0.33	-0.5
80,284	+		GFF2844	0.33	-0.9
80,284	+		GFF2844	0.33	+0.1
80,285	-		GFF2844	0.33	-0.3
80,285	-		GFF2844	0.33	-1.8
80,285	-		GFF2844	0.33	-0.5
80,300	-		GFF2844	0.34	-1.3
80,318	+		GFF2844	0.34	-0.9
80,319	-		GFF2844	0.35	-1.4
80,339	-		GFF2844	0.35	+0.5
80,339	-		GFF2844	0.35	+0.3
80,343	+		GFF2844	0.36	-0.3
80,344	-		GFF2844	0.36	-0.9
80,344	-		GFF2844	0.36	-0.6
80,366	-		GFF2844	0.37	-0.5
80,405	-		GFF2844	0.39	-0.2
80,405	-		GFF2844	0.39	+0.5
80,424	-		GFF2844	0.40	+0.3
80,478	+		GFF2844	0.42	-1.3
80,478	+		GFF2844	0.42	-0.5
80,493	+		GFF2844	0.43	-0.5
80,493	+		GFF2844	0.43	-0.3
80,493	+		GFF2844	0.43	+0.6
80,493	+		GFF2844	0.43	+0.2
80,493	+		GFF2844	0.43	+0.3
80,493	+		GFF2844	0.43	+0.2
80,493	+		GFF2844	0.43	-1.2
80,493	+		GFF2844	0.43	+1.5
80,494	-		GFF2844	0.43	+0.3
80,494	-		GFF2844	0.43	-1.3
80,494	-		GFF2844	0.43	+0.1
80,494	-		GFF2844	0.43	-1.9
80,494	-		GFF2844	0.43	-1.5
80,494	-		GFF2844	0.43	-1.8
80,494	-		GFF2844	0.43	-0.3