Strain Fitness in Methylophilus sp. DMC18 around GFF2832

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2831 and GFF2832 are separated by 121 nucleotidesGFF2832 and GFF2833 are separated by 333 nucleotidesGFF2833 and GFF2834 are separated by 183 nucleotides GFF2831 - hypothetical protein, at 65,825 to 67,879 GFF2831 GFF2832 - Polyribonucleotide nucleotidyltransferase, at 68,001 to 70,121 GFF2832 GFF2833 - 30S ribosomal protein S15, at 70,455 to 70,724 GFF2833 GFF2834 - Ribokinase, at 70,908 to 71,801 GFF2834 Position (kb) 68 69 70 71Strain fitness (log2 ratio) -3 -2 -1 0 1at 67.033 kb on + strand, within GFF2831at 67.047 kb on + strand, within GFF2831at 67.047 kb on + strand, within GFF2831at 67.079 kb on + strand, within GFF2831at 67.079 kb on + strand, within GFF2831at 67.080 kb on - strand, within GFF2831at 67.080 kb on - strand, within GFF2831at 67.080 kb on - strand, within GFF2831at 67.080 kb on - strand, within GFF2831at 67.138 kb on + strand, within GFF2831at 67.159 kb on - strand, within GFF2831at 67.159 kb on - strand, within GFF2831at 67.172 kb on - strand, within GFF2831at 67.184 kb on - strand, within GFF2831at 67.223 kb on - strand, within GFF2831at 67.225 kb on - strand, within GFF2831at 67.225 kb on - strand, within GFF2831at 67.225 kb on - strand, within GFF2831at 67.264 kb on - strand, within GFF2831at 67.264 kb on - strand, within GFF2831at 67.284 kb on + strand, within GFF2831at 67.284 kb on + strand, within GFF2831at 67.285 kb on - strand, within GFF2831at 67.285 kb on - strand, within GFF2831at 67.285 kb on - strand, within GFF2831at 67.285 kb on - strand, within GFF2831at 67.289 kb on + strand, within GFF2831at 67.289 kb on + strand, within GFF2831at 67.289 kb on + strand, within GFF2831at 67.290 kb on - strand, within GFF2831at 67.290 kb on - strand, within GFF2831at 67.290 kb on - strand, within GFF2831at 67.344 kb on + strand, within GFF2831at 67.344 kb on + strand, within GFF2831at 67.344 kb on + strand, within GFF2831at 67.443 kb on + strand, within GFF2831at 67.443 kb on + strand, within GFF2831at 67.443 kb on + strand, within GFF2831at 67.443 kb on + strand, within GFF2831at 67.443 kb on + strand, within GFF2831at 67.443 kb on + strand, within GFF2831at 67.443 kb on + strand, within GFF2831at 67.444 kb on - strand, within GFF2831at 67.444 kb on - strand, within GFF2831at 67.444 kb on - strand, within GFF2831at 67.444 kb on - strand, within GFF2831at 67.458 kb on + strand, within GFF2831at 67.466 kb on - strand, within GFF2831at 67.557 kb on + strand, within GFF2831at 67.557 kb on + strand, within GFF2831at 67.557 kb on + strand, within GFF2831at 67.557 kb on + strand, within GFF2831at 67.557 kb on + strand, within GFF2831at 67.557 kb on + strand, within GFF2831at 67.557 kb on + strand, within GFF2831at 67.557 kb on + strand, within GFF2831at 67.557 kb on + strand, within GFF2831at 67.557 kb on + strand, within GFF2831at 67.557 kb on + strand, within GFF2831at 67.557 kb on + strand, within GFF2831at 67.557 kb on + strand, within GFF2831at 67.557 kb on + strand, within GFF2831at 67.557 kb on + strand, within GFF2831at 67.557 kb on + strand, within GFF2831at 67.557 kb on + strand, within GFF2831at 67.557 kb on + strand, within GFF2831at 67.558 kb on - strand, within GFF2831at 67.558 kb on - strand, within GFF2831at 67.558 kb on - strand, within GFF2831at 67.558 kb on - strand, within GFF2831at 67.558 kb on - strand, within GFF2831at 67.558 kb on - strand, within GFF2831at 67.558 kb on - strand, within GFF2831at 67.558 kb on - strand, within GFF2831at 67.558 kb on - strand, within GFF2831at 67.558 kb on - strand, within GFF2831at 67.665 kb on - strand, within GFF2831at 67.665 kb on - strand, within GFF2831at 67.665 kb on - strand, within GFF2831at 67.761 kb on + strandat 67.762 kb on - strandat 67.762 kb on - strandat 67.850 kb on + strandat 67.856 kb on + strandat 67.857 kb on - strandat 67.915 kb on + strandat 67.915 kb on + strandat 67.915 kb on + strandat 67.915 kb on + strandat 67.916 kb on - strandat 67.916 kb on - strandat 67.916 kb on - strandat 67.916 kb on - strandat 67.916 kb on - strandat 67.916 kb on - strandat 67.916 kb on - strandat 67.916 kb on - strandat 67.918 kb on - strandat 67.921 kb on + strandat 67.921 kb on + strandat 67.921 kb on + strandat 67.956 kb on - strandat 67.983 kb on + strandat 67.984 kb on - strandat 68.002 kb on + strandat 68.002 kb on + strandat 68.003 kb on - strandat 68.003 kb on - strandat 68.003 kb on - strandat 68.003 kb on - strandat 68.003 kb on - strandat 68.103 kb on - strandat 68.126 kb on - strandat 68.246 kb on - strand, within GFF2832at 68.246 kb on - strand, within GFF2832at 68.246 kb on - strand, within GFF2832at 68.246 kb on - strand, within GFF2832at 68.246 kb on - strand, within GFF2832at 68.263 kb on - strand, within GFF2832at 68.263 kb on - strand, within GFF2832at 68.263 kb on - strand, within GFF2832at 68.263 kb on - strand, within GFF2832at 70.138 kb on - strandat 70.138 kb on - strandat 70.138 kb on - strandat 70.138 kb on - strandat 70.158 kb on - strandat 70.161 kb on - strandat 70.411 kb on - strandat 70.411 kb on - strandat 70.435 kb on - strandat 70.448 kb on - strandat 70.457 kb on - strandat 70.457 kb on - strandat 70.457 kb on - strandat 70.850 kb on - strandat 70.884 kb on - strandat 70.887 kb on + strandat 70.888 kb on - strandat 70.909 kb on + strandat 71.048 kb on + strand, within GFF2834at 71.048 kb on + strand, within GFF2834at 71.049 kb on - strand, within GFF2834at 71.049 kb on - strand, within GFF2834at 71.050 kb on + strand, within GFF2834at 71.050 kb on + strand, within GFF2834at 71.050 kb on + strand, within GFF2834at 71.050 kb on + strand, within GFF2834at 71.051 kb on - strand, within GFF2834at 71.051 kb on - strand, within GFF2834at 71.051 kb on - strand, within GFF2834at 71.051 kb on - strand, within GFF2834at 71.051 kb on - strand, within GFF2834at 71.067 kb on + strand, within GFF2834at 71.067 kb on + strand, within GFF2834at 71.067 kb on + strand, within GFF2834at 71.067 kb on + strand, within GFF2834at 71.067 kb on + strand, within GFF2834at 71.067 kb on + strand, within GFF2834at 71.067 kb on + strand, within GFF2834at 71.067 kb on + strand, within GFF2834at 71.067 kb on + strand, within GFF2834at 71.067 kb on + strand, within GFF2834at 71.067 kb on + strand, within GFF2834at 71.068 kb on - strand, within GFF2834at 71.068 kb on - strand, within GFF2834at 71.068 kb on - strand, within GFF2834at 71.068 kb on - strand, within GFF2834at 71.068 kb on - strand, within GFF2834at 71.068 kb on - strand, within GFF2834at 71.068 kb on - strand, within GFF2834at 71.068 kb on - strand, within GFF2834at 71.068 kb on - strand, within GFF2834at 71.068 kb on - strand, within GFF2834at 71.068 kb on - strand, within GFF2834at 71.068 kb on - strand, within GFF2834at 71.068 kb on - strand, within GFF2834at 71.068 kb on - strand, within GFF2834at 71.068 kb on - strand, within GFF2834

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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67,033 + GFF2831 0.59 -1.3
67,047 + GFF2831 0.59 +0.1
67,047 + GFF2831 0.59 -1.1
67,079 + GFF2831 0.61 -0.5
67,079 + GFF2831 0.61 -0.9
67,080 - GFF2831 0.61 -1.3
67,080 - GFF2831 0.61 +0.1
67,080 - GFF2831 0.61 +0.1
67,080 - GFF2831 0.61 -0.6
67,138 + GFF2831 0.64 -1.1
67,159 - GFF2831 0.65 +0.1
67,159 - GFF2831 0.65 -1.8
67,172 - GFF2831 0.66 -0.7
67,184 - GFF2831 0.66 -1.3
67,223 - GFF2831 0.68 -0.5
67,225 - GFF2831 0.68 -0.9
67,225 - GFF2831 0.68 -0.8
67,225 - GFF2831 0.68 -0.8
67,264 - GFF2831 0.70 +0.2
67,264 - GFF2831 0.70 -0.9
67,284 + GFF2831 0.71 +0.4
67,284 + GFF2831 0.71 -0.9
67,285 - GFF2831 0.71 -0.3
67,285 - GFF2831 0.71 +0.2
67,285 - GFF2831 0.71 -1.5
67,285 - GFF2831 0.71 -1.5
67,289 + GFF2831 0.71 -0.9
67,289 + GFF2831 0.71 -0.5
67,289 + GFF2831 0.71 -0.8
67,290 - GFF2831 0.71 +0.8
67,290 - GFF2831 0.71 -1.3
67,290 - GFF2831 0.71 -0.5
67,344 + GFF2831 0.74 +0.1
67,344 + GFF2831 0.74 +0.4
67,344 + GFF2831 0.74 +1.4
67,443 + GFF2831 0.79 -1.3
67,443 + GFF2831 0.79 +0.5
67,443 + GFF2831 0.79 -0.9
67,443 + GFF2831 0.79 +0.1
67,443 + GFF2831 0.79 -1.1
67,443 + GFF2831 0.79 -0.9
67,443 + GFF2831 0.79 -1.9
67,444 - GFF2831 0.79 +0.3
67,444 - GFF2831 0.79 -0.4
67,444 - GFF2831 0.79 -0.3
67,444 - GFF2831 0.79 +0.1
67,458 + GFF2831 0.79 +0.1
67,466 - GFF2831 0.80 +0.6
67,557 + GFF2831 0.84 -1.1
67,557 + GFF2831 0.84 -1.0
67,557 + GFF2831 0.84 +0.8
67,557 + GFF2831 0.84 -0.3
67,557 + GFF2831 0.84 -0.4
67,557 + GFF2831 0.84 -0.4
67,557 + GFF2831 0.84 -0.3
67,557 + GFF2831 0.84 -0.9
67,557 + GFF2831 0.84 +0.6
67,557 + GFF2831 0.84 -0.5
67,557 + GFF2831 0.84 -0.4
67,557 + GFF2831 0.84 -0.9
67,557 + GFF2831 0.84 -0.6
67,557 + GFF2831 0.84 -0.1
67,557 + GFF2831 0.84 -0.5
67,557 + GFF2831 0.84 -1.2
67,557 + GFF2831 0.84 -0.4
67,557 + GFF2831 0.84 +0.5
67,558 - GFF2831 0.84 -0.2
67,558 - GFF2831 0.84 +1.1
67,558 - GFF2831 0.84 +0.7
67,558 - GFF2831 0.84 -1.1
67,558 - GFF2831 0.84 -0.0
67,558 - GFF2831 0.84 +0.1
67,558 - GFF2831 0.84 -1.1
67,558 - GFF2831 0.84 -0.9
67,558 - GFF2831 0.84 -0.5
67,558 - GFF2831 0.84 +0.7
67,665 - GFF2831 0.90 -1.3
67,665 - GFF2831 0.90 -1.3
67,665 - GFF2831 0.90 -1.4
67,761 + -0.4
67,762 - +0.1
67,762 - -0.5
67,850 + +0.6
67,856 + -0.5
67,857 - -1.1
67,915 + -0.2
67,915 + +0.1
67,915 + -0.4
67,915 + -0.3
67,916 - -0.1
67,916 - +0.1
67,916 - +0.1
67,916 - +0.1
67,916 - +1.3
67,916 - -2.3
67,916 - -1.3
67,916 - -0.9
67,918 - -0.3
67,921 + -0.7
67,921 + +0.1
67,921 + -0.8
67,956 - -2.4
67,983 + -1.9
67,984 - +0.1
68,002 + -0.9
68,002 + -0.3
68,003 - -0.4
68,003 - -0.3
68,003 - -0.0
68,003 - -0.9
68,003 - -1.1
68,103 - -1.5
68,126 - -0.9
68,246 - GFF2832 0.12 -1.1
68,246 - GFF2832 0.12 -1.5
68,246 - GFF2832 0.12 -1.5
68,246 - GFF2832 0.12 +0.6
68,246 - GFF2832 0.12 -1.6
68,263 - GFF2832 0.12 -0.9
68,263 - GFF2832 0.12 -0.9
68,263 - GFF2832 0.12 -2.9
68,263 - GFF2832 0.12 -0.4
70,138 - -1.9
70,138 - -0.9
70,138 - +0.1
70,138 - -2.4
70,158 - +0.2
70,161 - -0.8
70,411 - -0.5
70,411 - -1.1
70,435 - -1.5
70,448 - -0.3
70,457 - -1.5
70,457 - -2.6
70,457 - -2.5
70,850 - -0.1
70,884 - -0.5
70,887 + -3.1
70,888 - -0.7
70,909 + -0.3
71,048 + GFF2834 0.16 +1.4
71,048 + GFF2834 0.16 -0.6
71,049 - GFF2834 0.16 -0.9
71,049 - GFF2834 0.16 -0.9
71,050 + GFF2834 0.16 +0.1
71,050 + GFF2834 0.16 -0.9
71,050 + GFF2834 0.16 +0.2
71,050 + GFF2834 0.16 -0.3
71,051 - GFF2834 0.16 +1.1
71,051 - GFF2834 0.16 -0.3
71,051 - GFF2834 0.16 -0.9
71,051 - GFF2834 0.16 +0.1
71,051 - GFF2834 0.16 +0.1
71,067 + GFF2834 0.18 +0.1
71,067 + GFF2834 0.18 -0.9
71,067 + GFF2834 0.18 -0.6
71,067 + GFF2834 0.18 -1.4
71,067 + GFF2834 0.18 -1.8
71,067 + GFF2834 0.18 -0.9
71,067 + GFF2834 0.18 +0.3
71,067 + GFF2834 0.18 -0.7
71,067 + GFF2834 0.18 -1.4
71,067 + GFF2834 0.18 -1.0
71,067 + GFF2834 0.18 -1.3
71,068 - GFF2834 0.18 -0.3
71,068 - GFF2834 0.18 -0.4
71,068 - GFF2834 0.18 -1.6
71,068 - GFF2834 0.18 -2.1
71,068 - GFF2834 0.18 -0.7
71,068 - GFF2834 0.18 -0.2
71,068 - GFF2834 0.18 -1.4
71,068 - GFF2834 0.18 -0.3
71,068 - GFF2834 0.18 +0.1
71,068 - GFF2834 0.18 -0.3
71,068 - GFF2834 0.18 -0.9
71,068 - GFF2834 0.18 -0.5
71,068 - GFF2834 0.18 -0.9
71,068 - GFF2834 0.18 -0.0
71,068 - GFF2834 0.18 +0.2

Or see this region's nucleotide sequence