Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2788 and GFF2789 are separated by 24 nucleotides GFF2789 and GFF2790 overlap by 40 nucleotides GFF2790 and GFF2791 are separated by 167 nucleotides GFF2791 and GFF2792 are separated by 2 nucleotides
GFF2788 - 4-hydroxybenzoate octaprenyltransferase, at 17,335 to 18,198
GFF2788
GFF2789 - Chorismate pyruvate-lyase, at 18,223 to 18,822
GFF2789
GFF2790 - hypothetical protein, at 18,783 to 19,940
GFF2790
GFF2791 - Protein ApaG, at 20,108 to 20,491
GFF2791
GFF2792 - Thiazole synthase, at 20,494 to 21,279
GFF2792
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 18.417 kb on + strand, within GFF2789 at 18.418 kb on - strand, within GFF2789 at 18.419 kb on - strand, within GFF2789 at 18.510 kb on + strand, within GFF2789 at 18.510 kb on + strand, within GFF2789 at 18.510 kb on + strand, within GFF2789 at 18.511 kb on - strand, within GFF2789 at 18.511 kb on - strand, within GFF2789 at 18.511 kb on - strand, within GFF2789 at 18.607 kb on + strand, within GFF2789 at 18.607 kb on + strand, within GFF2789 at 18.607 kb on + strand, within GFF2789 at 18.608 kb on - strand, within GFF2789 at 18.883 kb on + strand at 18.971 kb on - strand, within GFF2790 at 18.986 kb on - strand, within GFF2790 at 19.032 kb on - strand, within GFF2790 at 19.032 kb on - strand, within GFF2790 at 19.109 kb on - strand, within GFF2790 at 19.109 kb on - strand, within GFF2790 at 19.109 kb on - strand, within GFF2790 at 19.109 kb on - strand, within GFF2790 at 19.109 kb on - strand, within GFF2790 at 19.318 kb on - strand, within GFF2790 at 19.458 kb on - strand, within GFF2790 at 19.460 kb on - strand, within GFF2790 at 19.580 kb on - strand, within GFF2790 at 19.628 kb on - strand, within GFF2790 at 19.628 kb on - strand, within GFF2790 at 19.963 kb on - strand at 19.963 kb on - strand at 19.986 kb on + strand at 19.986 kb on + strand at 19.986 kb on + strand at 19.986 kb on + strand at 19.986 kb on + strand at 19.986 kb on + strand at 19.987 kb on - strand at 19.987 kb on - strand at 19.987 kb on - strand at 19.987 kb on - strand at 20.017 kb on - strand at 20.038 kb on + strand at 20.038 kb on + strand at 20.039 kb on - strand at 20.039 kb on - strand at 20.051 kb on + strand at 20.051 kb on + strand at 20.052 kb on - strand at 20.052 kb on - strand at 20.052 kb on - strand at 20.052 kb on - strand at 20.052 kb on - strand at 20.052 kb on - strand at 20.052 kb on - strand at 20.052 kb on - strand at 20.109 kb on + strand at 20.110 kb on - strand at 20.190 kb on + strand, within GFF2791 at 20.190 kb on + strand, within GFF2791 at 20.191 kb on - strand, within GFF2791 at 20.191 kb on - strand, within GFF2791 at 20.191 kb on - strand, within GFF2791 at 20.191 kb on - strand, within GFF2791 at 20.199 kb on + strand, within GFF2791 at 20.199 kb on + strand, within GFF2791 at 20.200 kb on - strand, within GFF2791 at 20.200 kb on - strand, within GFF2791 at 20.200 kb on - strand, within GFF2791 at 20.200 kb on - strand, within GFF2791 at 20.200 kb on - strand, within GFF2791 at 20.219 kb on - strand, within GFF2791 at 20.219 kb on - strand, within GFF2791 at 20.233 kb on + strand, within GFF2791 at 20.240 kb on - strand, within GFF2791 at 20.240 kb on - strand, within GFF2791 at 20.242 kb on - strand, within GFF2791 at 20.248 kb on - strand, within GFF2791 at 20.320 kb on + strand, within GFF2791 at 20.320 kb on + strand, within GFF2791 at 20.320 kb on + strand, within GFF2791 at 20.320 kb on + strand, within GFF2791 at 20.320 kb on + strand, within GFF2791 at 20.321 kb on - strand, within GFF2791 at 20.321 kb on - strand, within GFF2791 at 20.321 kb on - strand, within GFF2791 at 20.321 kb on - strand, within GFF2791 at 20.321 kb on - strand, within GFF2791 at 20.321 kb on - strand, within GFF2791 at 20.321 kb on - strand, within GFF2791 at 20.321 kb on - strand, within GFF2791 at 20.329 kb on + strand, within GFF2791 at 20.386 kb on + strand, within GFF2791 at 20.392 kb on + strand, within GFF2791 at 20.392 kb on + strand, within GFF2791 at 20.392 kb on + strand, within GFF2791 at 20.392 kb on + strand, within GFF2791 at 20.393 kb on - strand, within GFF2791 at 20.393 kb on - strand, within GFF2791 at 20.393 kb on - strand, within GFF2791 at 20.394 kb on + strand, within GFF2791 at 20.394 kb on + strand, within GFF2791 at 20.394 kb on + strand, within GFF2791 at 20.395 kb on - strand, within GFF2791 at 20.395 kb on - strand, within GFF2791 at 20.400 kb on + strand, within GFF2791 at 20.400 kb on + strand, within GFF2791 at 20.400 kb on + strand, within GFF2791 at 20.400 kb on + strand, within GFF2791 at 20.400 kb on + strand, within GFF2791 at 20.400 kb on + strand, within GFF2791 at 20.400 kb on + strand, within GFF2791 at 20.400 kb on + strand, within GFF2791 at 20.400 kb on + strand, within GFF2791 at 20.400 kb on + strand, within GFF2791 at 20.400 kb on + strand, within GFF2791 at 20.400 kb on + strand, within GFF2791 at 20.400 kb on + strand, within GFF2791 at 20.400 kb on + strand, within GFF2791 at 20.400 kb on + strand, within GFF2791 at 20.400 kb on + strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.401 kb on - strand, within GFF2791 at 20.406 kb on + strand, within GFF2791 at 20.406 kb on + strand, within GFF2791 at 20.406 kb on + strand, within GFF2791 at 20.406 kb on + strand, within GFF2791 at 20.407 kb on - strand, within GFF2791 at 20.407 kb on - strand, within GFF2791 at 20.407 kb on - strand, within GFF2791 at 20.407 kb on - strand, within GFF2791 at 20.407 kb on - strand, within GFF2791 at 20.407 kb on - strand, within GFF2791 at 20.407 kb on - strand, within GFF2791 at 20.407 kb on - strand, within GFF2791 at 20.407 kb on - strand, within GFF2791 at 20.407 kb on - strand, within GFF2791 at 20.407 kb on - strand, within GFF2791 at 20.442 kb on + strand, within GFF2791 at 20.442 kb on + strand, within GFF2791 at 20.442 kb on + strand, within GFF2791 at 20.442 kb on + strand, within GFF2791 at 20.443 kb on - strand, within GFF2791 at 20.443 kb on - strand, within GFF2791 at 20.443 kb on - strand, within GFF2791 at 20.443 kb on - strand, within GFF2791 at 20.443 kb on - strand, within GFF2791 at 20.443 kb on - strand, within GFF2791 at 20.443 kb on - strand, within GFF2791 at 20.443 kb on - strand, within GFF2791 at 20.472 kb on + strand at 20.472 kb on + strand at 20.473 kb on - strand at 20.473 kb on - strand at 20.473 kb on - strand at 20.473 kb on - strand at 20.473 kb on - strand at 20.495 kb on + strand at 20.495 kb on + strand at 20.496 kb on - strand at 20.496 kb on - strand at 20.496 kb on - strand at 20.496 kb on - strand at 20.496 kb on - strand at 20.496 kb on - strand at 20.496 kb on - strand at 20.501 kb on - strand at 20.501 kb on - strand at 20.501 kb on - strand at 20.501 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 18,417 + GFF2789 0.32 +0.8 18,418 - GFF2789 0.33 +2.1 18,419 - GFF2789 0.33 -0.5 18,510 + GFF2789 0.48 -0.7 18,510 + GFF2789 0.48 -0.2 18,510 + GFF2789 0.48 +0.8 18,511 - GFF2789 0.48 -0.1 18,511 - GFF2789 0.48 -0.3 18,511 - GFF2789 0.48 +0.7 18,607 + GFF2789 0.64 -0.9 18,607 + GFF2789 0.64 -0.4 18,607 + GFF2789 0.64 -0.4 18,608 - GFF2789 0.64 +0.7 18,883 + -1.8 18,971 - GFF2790 0.16 -0.5 18,986 - GFF2790 0.18 -1.5 19,032 - GFF2790 0.22 -1.3 19,032 - GFF2790 0.22 -0.3 19,109 - GFF2790 0.28 -0.3 19,109 - GFF2790 0.28 -0.3 19,109 - GFF2790 0.28 -1.3 19,109 - GFF2790 0.28 +0.1 19,109 - GFF2790 0.28 +0.1 19,318 - GFF2790 0.46 -1.5 19,458 - GFF2790 0.58 -0.1 19,460 - GFF2790 0.58 -0.7 19,580 - GFF2790 0.69 -0.3 19,628 - GFF2790 0.73 -0.9 19,628 - GFF2790 0.73 -1.3 19,963 - -1.3 19,963 - -0.9 19,986 + -0.9 19,986 + +1.4 19,986 + -1.8 19,986 + -0.5 19,986 + -0.3 19,986 + +1.2 19,987 - +0.1 19,987 - -0.9 19,987 - -0.3 19,987 - -0.5 20,017 - -0.9 20,038 + +0.4 20,038 + +0.3 20,039 - -0.1 20,039 - -2.4 20,051 + -0.2 20,051 + -0.5 20,052 - +0.6 20,052 - -3.3 20,052 - -0.0 20,052 - -0.5 20,052 - -2.2 20,052 - -0.2 20,052 - -1.1 20,052 - +0.3 20,109 + -1.1 20,110 - -0.6 20,190 + GFF2791 0.21 -0.7 20,190 + GFF2791 0.21 -1.5 20,191 - GFF2791 0.22 -0.3 20,191 - GFF2791 0.22 -0.3 20,191 - GFF2791 0.22 -0.1 20,191 - GFF2791 0.22 -1.3 20,199 + GFF2791 0.24 +0.1 20,199 + GFF2791 0.24 -1.5 20,200 - GFF2791 0.24 -2.5 20,200 - GFF2791 0.24 -0.4 20,200 - GFF2791 0.24 -1.5 20,200 - GFF2791 0.24 -0.8 20,200 - GFF2791 0.24 +0.0 20,219 - GFF2791 0.29 -0.2 20,219 - GFF2791 0.29 -1.1 20,233 + GFF2791 0.33 -0.2 20,240 - GFF2791 0.34 +0.1 20,240 - GFF2791 0.34 -0.6 20,242 - GFF2791 0.35 +0.5 20,248 - GFF2791 0.36 -0.5 20,320 + GFF2791 0.55 -1.3 20,320 + GFF2791 0.55 +0.3 20,320 + GFF2791 0.55 +0.1 20,320 + GFF2791 0.55 -0.2 20,320 + GFF2791 0.55 +0.3 20,321 - GFF2791 0.55 +0.1 20,321 - GFF2791 0.55 -2.0 20,321 - GFF2791 0.55 -0.2 20,321 - GFF2791 0.55 -1.3 20,321 - GFF2791 0.55 +0.1 20,321 - GFF2791 0.55 -0.9 20,321 - GFF2791 0.55 -0.3 20,321 - GFF2791 0.55 -0.3 20,329 + GFF2791 0.58 +0.1 20,386 + GFF2791 0.72 -0.2 20,392 + GFF2791 0.74 -0.9 20,392 + GFF2791 0.74 -0.4 20,392 + GFF2791 0.74 -0.8 20,392 + GFF2791 0.74 -0.1 20,393 - GFF2791 0.74 +0.1 20,393 - GFF2791 0.74 +0.9 20,393 - GFF2791 0.74 -0.8 20,394 + GFF2791 0.74 -0.1 20,394 + GFF2791 0.74 -0.5 20,394 + GFF2791 0.74 -1.4 20,395 - GFF2791 0.75 -1.3 20,395 - GFF2791 0.75 -1.3 20,400 + GFF2791 0.76 +0.1 20,400 + GFF2791 0.76 -0.4 20,400 + GFF2791 0.76 +0.3 20,400 + GFF2791 0.76 -0.2 20,400 + GFF2791 0.76 +0.4 20,400 + GFF2791 0.76 +0.5 20,400 + GFF2791 0.76 +0.4 20,400 + GFF2791 0.76 +0.2 20,400 + GFF2791 0.76 +0.2 20,400 + GFF2791 0.76 +0.2 20,400 + GFF2791 0.76 -0.5 20,400 + GFF2791 0.76 -0.1 20,400 + GFF2791 0.76 +0.1 20,400 + GFF2791 0.76 -0.1 20,400 + GFF2791 0.76 -0.2 20,400 + GFF2791 0.76 -0.3 20,401 - GFF2791 0.76 +0.5 20,401 - GFF2791 0.76 +1.1 20,401 - GFF2791 0.76 -0.6 20,401 - GFF2791 0.76 -0.8 20,401 - GFF2791 0.76 +0.9 20,401 - GFF2791 0.76 -0.1 20,401 - GFF2791 0.76 -0.7 20,401 - GFF2791 0.76 -0.5 20,401 - GFF2791 0.76 -0.4 20,401 - GFF2791 0.76 -0.1 20,401 - GFF2791 0.76 +0.9 20,401 - GFF2791 0.76 -1.3 20,401 - GFF2791 0.76 -0.2 20,401 - GFF2791 0.76 -0.7 20,401 - GFF2791 0.76 -0.1 20,401 - GFF2791 0.76 +0.1 20,401 - GFF2791 0.76 -1.8 20,401 - GFF2791 0.76 -1.9 20,401 - GFF2791 0.76 +0.1 20,401 - GFF2791 0.76 -0.0 20,401 - GFF2791 0.76 +0.1 20,401 - GFF2791 0.76 -0.9 20,401 - GFF2791 0.76 -0.8 20,401 - GFF2791 0.76 -1.0 20,401 - GFF2791 0.76 -1.4 20,401 - GFF2791 0.76 -0.9 20,401 - GFF2791 0.76 -1.9 20,401 - GFF2791 0.76 -0.5 20,406 + GFF2791 0.78 -1.3 20,406 + GFF2791 0.78 -0.2 20,406 + GFF2791 0.78 +1.2 20,406 + GFF2791 0.78 -1.3 20,407 - GFF2791 0.78 +0.1 20,407 - GFF2791 0.78 -0.9 20,407 - GFF2791 0.78 -0.4 20,407 - GFF2791 0.78 -0.6 20,407 - GFF2791 0.78 -1.3 20,407 - GFF2791 0.78 -0.9 20,407 - GFF2791 0.78 -2.6 20,407 - GFF2791 0.78 -0.6 20,407 - GFF2791 0.78 -0.2 20,407 - GFF2791 0.78 -0.5 20,407 - GFF2791 0.78 -0.2 20,442 + GFF2791 0.87 -1.3 20,442 + GFF2791 0.87 -0.5 20,442 + GFF2791 0.87 -0.9 20,442 + GFF2791 0.87 -0.6 20,443 - GFF2791 0.87 -0.2 20,443 - GFF2791 0.87 -1.1 20,443 - GFF2791 0.87 +1.4 20,443 - GFF2791 0.87 -0.9 20,443 - GFF2791 0.87 -0.8 20,443 - GFF2791 0.87 -0.5 20,443 - GFF2791 0.87 -0.2 20,443 - GFF2791 0.87 -0.6 20,472 + -1.5 20,472 + -0.4 20,473 - +0.2 20,473 - -1.8 20,473 - -0.7 20,473 - -0.2 20,473 - -0.2 20,495 + +0.5 20,495 + +0.7 20,496 - -0.1 20,496 - -1.9 20,496 - -1.5 20,496 - -0.4 20,496 - -0.4 20,496 - -0.9 20,496 - -1.0 20,501 - -0.8 20,501 - +0.2 20,501 - -0.1 20,501 - -1.5
Or see this region's nucleotide sequence