Strain Fitness in Methylophilus sp. DMC18 around GFF2762

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2761 and GFF2762 are separated by 157 nucleotidesGFF2762 and GFF2763 are separated by 99 nucleotidesGFF2763 and GFF2764 are separated by 116 nucleotides GFF2761 - Putative outer membrane protein, at 164,769 to 166,016 GFF2761 GFF2762 - Maltodextrin phosphorylase, at 166,174 to 168,675 GFF2762 GFF2763 - hypothetical protein, at 168,775 to 169,545 GFF2763 GFF2764 - hypothetical protein, at 169,662 to 170,627 GFF2764 Position (kb) 166 167 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 165.188 kb on + strand, within GFF2761at 165.342 kb on - strand, within GFF2761at 165.342 kb on - strand, within GFF2761at 165.384 kb on + strand, within GFF2761at 165.384 kb on + strand, within GFF2761at 165.385 kb on - strand, within GFF2761at 165.450 kb on + strand, within GFF2761at 165.451 kb on - strand, within GFF2761at 165.461 kb on + strand, within GFF2761at 165.461 kb on + strand, within GFF2761at 165.462 kb on - strand, within GFF2761at 165.465 kb on + strand, within GFF2761at 165.465 kb on + strand, within GFF2761at 165.465 kb on + strand, within GFF2761at 165.465 kb on + strand, within GFF2761at 165.465 kb on + strand, within GFF2761at 165.466 kb on - strand, within GFF2761at 165.466 kb on - strand, within GFF2761at 165.466 kb on - strand, within GFF2761at 165.466 kb on - strand, within GFF2761at 165.466 kb on - strand, within GFF2761at 165.486 kb on + strand, within GFF2761at 165.486 kb on + strand, within GFF2761at 165.486 kb on + strand, within GFF2761at 165.486 kb on + strand, within GFF2761at 165.487 kb on - strand, within GFF2761at 165.487 kb on - strand, within GFF2761at 165.487 kb on - strand, within GFF2761at 165.487 kb on - strand, within GFF2761at 165.534 kb on + strand, within GFF2761at 165.534 kb on + strand, within GFF2761at 165.534 kb on + strand, within GFF2761at 165.534 kb on + strand, within GFF2761at 165.534 kb on + strand, within GFF2761at 165.534 kb on + strand, within GFF2761at 165.535 kb on - strand, within GFF2761at 165.535 kb on - strand, within GFF2761at 165.535 kb on - strand, within GFF2761at 165.535 kb on - strand, within GFF2761at 165.603 kb on + strand, within GFF2761at 165.604 kb on - strand, within GFF2761at 165.604 kb on - strand, within GFF2761at 165.604 kb on - strand, within GFF2761at 165.604 kb on - strand, within GFF2761at 165.614 kb on - strand, within GFF2761at 165.614 kb on - strand, within GFF2761at 165.637 kb on + strand, within GFF2761at 165.638 kb on - strand, within GFF2761at 165.705 kb on + strand, within GFF2761at 165.706 kb on - strand, within GFF2761at 165.706 kb on - strand, within GFF2761at 165.707 kb on + strand, within GFF2761at 165.708 kb on - strand, within GFF2761at 165.723 kb on + strand, within GFF2761at 165.723 kb on + strand, within GFF2761at 165.723 kb on + strand, within GFF2761at 165.723 kb on + strand, within GFF2761at 165.723 kb on + strand, within GFF2761at 165.724 kb on - strand, within GFF2761at 165.724 kb on - strand, within GFF2761at 165.729 kb on + strand, within GFF2761at 165.730 kb on - strand, within GFF2761at 165.731 kb on + strand, within GFF2761at 165.732 kb on - strand, within GFF2761at 165.748 kb on + strand, within GFF2761at 165.749 kb on - strand, within GFF2761at 165.749 kb on - strand, within GFF2761at 165.760 kb on - strand, within GFF2761at 165.760 kb on - strand, within GFF2761at 165.761 kb on + strand, within GFF2761at 165.762 kb on - strand, within GFF2761at 165.795 kb on - strand, within GFF2761at 165.803 kb on + strand, within GFF2761at 165.803 kb on + strand, within GFF2761at 165.803 kb on + strand, within GFF2761at 165.803 kb on + strand, within GFF2761at 165.807 kb on - strand, within GFF2761at 165.911 kb on + strandat 165.975 kb on + strandat 165.975 kb on + strandat 165.975 kb on + strandat 165.975 kb on + strandat 165.976 kb on - strandat 165.976 kb on - strandat 165.976 kb on - strandat 165.976 kb on - strandat 165.976 kb on - strandat 165.976 kb on - strandat 165.976 kb on - strandat 165.988 kb on + strandat 165.999 kb on + strandat 166.000 kb on - strandat 166.000 kb on - strandat 166.001 kb on + strandat 166.001 kb on + strandat 166.048 kb on + strandat 166.049 kb on - strandat 166.051 kb on - strandat 166.051 kb on - strandat 166.051 kb on - strandat 166.051 kb on - strandat 166.087 kb on + strandat 166.088 kb on - strandat 166.109 kb on + strandat 166.110 kb on - strandat 166.217 kb on + strandat 166.218 kb on - strandat 166.340 kb on - strandat 166.432 kb on + strand, within GFF2762at 166.436 kb on - strand, within GFF2762at 166.439 kb on + strand, within GFF2762at 166.508 kb on + strand, within GFF2762at 166.725 kb on + strand, within GFF2762at 166.747 kb on - strand, within GFF2762at 166.747 kb on - strand, within GFF2762at 166.774 kb on - strand, within GFF2762at 166.792 kb on + strand, within GFF2762at 166.811 kb on + strand, within GFF2762at 166.914 kb on + strand, within GFF2762at 166.925 kb on + strand, within GFF2762at 166.977 kb on + strand, within GFF2762at 166.978 kb on - strand, within GFF2762at 167.086 kb on + strand, within GFF2762at 167.106 kb on + strand, within GFF2762at 167.115 kb on + strand, within GFF2762at 167.137 kb on + strand, within GFF2762at 167.242 kb on + strand, within GFF2762at 167.384 kb on - strand, within GFF2762at 167.796 kb on + strand, within GFF2762at 167.881 kb on - strand, within GFF2762at 167.890 kb on + strand, within GFF2762at 167.890 kb on + strand, within GFF2762at 167.891 kb on - strand, within GFF2762at 167.932 kb on + strand, within GFF2762at 167.932 kb on + strand, within GFF2762at 167.933 kb on - strand, within GFF2762at 167.935 kb on - strand, within GFF2762at 167.968 kb on - strand, within GFF2762at 168.111 kb on + strand, within GFF2762at 168.116 kb on - strand, within GFF2762at 168.207 kb on + strand, within GFF2762at 168.239 kb on + strand, within GFF2762at 168.243 kb on + strand, within GFF2762at 168.243 kb on + strand, within GFF2762at 168.364 kb on + strand, within GFF2762at 168.403 kb on - strand, within GFF2762at 168.418 kb on + strand, within GFF2762at 168.456 kb on + strandat 168.494 kb on + strandat 168.494 kb on + strandat 168.495 kb on - strandat 168.514 kb on + strandat 168.514 kb on + strandat 168.547 kb on + strandat 168.574 kb on - strandat 168.635 kb on - strandat 168.674 kb on - strandat 168.740 kb on + strandat 168.740 kb on + strandat 168.740 kb on + strandat 168.875 kb on + strand, within GFF2763at 168.887 kb on + strand, within GFF2763at 169.027 kb on - strand, within GFF2763at 169.027 kb on - strand, within GFF2763at 169.097 kb on + strand, within GFF2763at 169.097 kb on + strand, within GFF2763at 169.097 kb on + strand, within GFF2763at 169.097 kb on + strand, within GFF2763at 169.098 kb on - strand, within GFF2763at 169.258 kb on + strand, within GFF2763at 169.259 kb on - strand, within GFF2763at 169.259 kb on - strand, within GFF2763at 169.259 kb on - strand, within GFF2763at 169.344 kb on + strand, within GFF2763at 169.344 kb on + strand, within GFF2763at 169.344 kb on + strand, within GFF2763at 169.344 kb on + strand, within GFF2763at 169.344 kb on + strand, within GFF2763at 169.344 kb on + strand, within GFF2763at 169.344 kb on + strand, within GFF2763at 169.345 kb on - strand, within GFF2763at 169.345 kb on - strand, within GFF2763at 169.348 kb on + strand, within GFF2763at 169.348 kb on + strand, within GFF2763at 169.348 kb on + strand, within GFF2763at 169.348 kb on + strand, within GFF2763at 169.348 kb on + strand, within GFF2763at 169.348 kb on + strand, within GFF2763at 169.348 kb on + strand, within GFF2763at 169.348 kb on + strand, within GFF2763at 169.348 kb on + strand, within GFF2763at 169.348 kb on + strand, within GFF2763at 169.348 kb on + strand, within GFF2763at 169.348 kb on + strand, within GFF2763at 169.349 kb on - strand, within GFF2763at 169.349 kb on - strand, within GFF2763at 169.349 kb on - strand, within GFF2763at 169.349 kb on - strand, within GFF2763at 169.349 kb on - strand, within GFF2763at 169.349 kb on - strand, within GFF2763at 169.349 kb on - strand, within GFF2763at 169.350 kb on + strand, within GFF2763at 169.350 kb on + strand, within GFF2763at 169.350 kb on + strand, within GFF2763at 169.350 kb on + strand, within GFF2763at 169.351 kb on - strand, within GFF2763at 169.351 kb on - strand, within GFF2763at 169.357 kb on + strand, within GFF2763at 169.357 kb on + strand, within GFF2763at 169.357 kb on + strand, within GFF2763at 169.357 kb on + strand, within GFF2763at 169.357 kb on + strand, within GFF2763at 169.357 kb on + strand, within GFF2763at 169.357 kb on + strand, within GFF2763at 169.358 kb on - strand, within GFF2763at 169.358 kb on - strand, within GFF2763at 169.358 kb on - strand, within GFF2763at 169.407 kb on + strand, within GFF2763at 169.407 kb on + strand, within GFF2763at 169.407 kb on + strand, within GFF2763at 169.417 kb on + strand, within GFF2763at 169.417 kb on + strand, within GFF2763at 169.417 kb on + strand, within GFF2763at 169.417 kb on + strand, within GFF2763at 169.417 kb on + strand, within GFF2763at 169.417 kb on + strand, within GFF2763at 169.417 kb on + strand, within GFF2763at 169.417 kb on + strand, within GFF2763at 169.417 kb on + strand, within GFF2763at 169.436 kb on + strand, within GFF2763at 169.543 kb on + strandat 169.543 kb on + strandat 169.543 kb on + strandat 169.544 kb on - strandat 169.633 kb on - strandat 169.633 kb on - strandat 169.641 kb on + strandat 169.641 kb on + strandat 169.642 kb on - strandat 169.642 kb on - strandat 169.644 kb on + strandat 169.645 kb on - strandat 169.661 kb on + strandat 169.661 kb on + strandat 169.661 kb on + strandat 169.661 kb on + strandat 169.661 kb on + strandat 169.662 kb on - strandat 169.662 kb on - strandat 169.662 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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165,188 + GFF2761 0.34 -0.2
165,342 - GFF2761 0.46 -0.8
165,342 - GFF2761 0.46 +0.0
165,384 + GFF2761 0.49 +0.0
165,384 + GFF2761 0.49 +0.2
165,385 - GFF2761 0.49 -0.2
165,450 + GFF2761 0.55 -0.3
165,451 - GFF2761 0.55 +0.0
165,461 + GFF2761 0.55 +0.8
165,461 + GFF2761 0.55 +0.6
165,462 - GFF2761 0.56 +0.0
165,465 + GFF2761 0.56 -1.3
165,465 + GFF2761 0.56 -0.4
165,465 + GFF2761 0.56 +0.0
165,465 + GFF2761 0.56 +0.9
165,465 + GFF2761 0.56 -0.2
165,466 - GFF2761 0.56 -0.4
165,466 - GFF2761 0.56 +0.5
165,466 - GFF2761 0.56 -0.4
165,466 - GFF2761 0.56 -0.1
165,466 - GFF2761 0.56 -1.6
165,486 + GFF2761 0.57 +0.2
165,486 + GFF2761 0.57 -1.8
165,486 + GFF2761 0.57 +0.4
165,486 + GFF2761 0.57 -0.0
165,487 - GFF2761 0.58 -0.1
165,487 - GFF2761 0.58 +0.2
165,487 - GFF2761 0.58 +0.0
165,487 - GFF2761 0.58 +0.7
165,534 + GFF2761 0.61 -0.8
165,534 + GFF2761 0.61 -3.1
165,534 + GFF2761 0.61 -0.0
165,534 + GFF2761 0.61 -0.6
165,534 + GFF2761 0.61 -0.9
165,534 + GFF2761 0.61 +1.6
165,535 - GFF2761 0.61 -0.6
165,535 - GFF2761 0.61 +0.8
165,535 - GFF2761 0.61 -0.9
165,535 - GFF2761 0.61 -2.0
165,603 + GFF2761 0.67 -1.0
165,604 - GFF2761 0.67 -1.4
165,604 - GFF2761 0.67 -0.6
165,604 - GFF2761 0.67 +0.8
165,604 - GFF2761 0.67 +0.0
165,614 - GFF2761 0.68 +0.0
165,614 - GFF2761 0.68 -1.4
165,637 + GFF2761 0.70 -1.3
165,638 - GFF2761 0.70 -0.3
165,705 + GFF2761 0.75 +0.6
165,706 - GFF2761 0.75 -1.2
165,706 - GFF2761 0.75 -0.3
165,707 + GFF2761 0.75 -1.4
165,708 - GFF2761 0.75 -0.9
165,723 + GFF2761 0.76 +1.0
165,723 + GFF2761 0.76 +0.1
165,723 + GFF2761 0.76 -1.8
165,723 + GFF2761 0.76 -0.6
165,723 + GFF2761 0.76 -0.4
165,724 - GFF2761 0.77 +0.6
165,724 - GFF2761 0.77 -1.8
165,729 + GFF2761 0.77 -0.3
165,730 - GFF2761 0.77 -1.3
165,731 + GFF2761 0.77 -0.3
165,732 - GFF2761 0.77 -0.7
165,748 + GFF2761 0.78 +0.2
165,749 - GFF2761 0.79 +0.0
165,749 - GFF2761 0.79 -2.0
165,760 - GFF2761 0.79 -0.8
165,760 - GFF2761 0.79 +0.7
165,761 + GFF2761 0.79 -0.7
165,762 - GFF2761 0.80 -0.4
165,795 - GFF2761 0.82 -0.3
165,803 + GFF2761 0.83 -1.0
165,803 + GFF2761 0.83 -1.0
165,803 + GFF2761 0.83 -0.9
165,803 + GFF2761 0.83 -0.2
165,807 - GFF2761 0.83 +0.4
165,911 + -1.3
165,975 + +0.0
165,975 + -2.6
165,975 + -1.3
165,975 + -0.6
165,976 - -0.7
165,976 - +1.0
165,976 - -0.4
165,976 - -0.8
165,976 - -1.8
165,976 - -0.6
165,976 - +2.2
165,988 + -0.1
165,999 + +0.0
166,000 - -0.4
166,000 - -1.1
166,001 + -0.3
166,001 + +0.8
166,048 + +0.3
166,049 - -0.6
166,051 - -2.9
166,051 - +0.1
166,051 - -1.0
166,051 - -0.7
166,087 + -0.4
166,088 - +0.6
166,109 + -0.4
166,110 - -1.3
166,217 + -0.6
166,218 - -1.6
166,340 - -0.6
166,432 + GFF2762 0.10 -1.0
166,436 - GFF2762 0.10 -1.0
166,439 + GFF2762 0.11 -1.6
166,508 + GFF2762 0.13 +0.0
166,725 + GFF2762 0.22 -1.0
166,747 - GFF2762 0.23 -1.3
166,747 - GFF2762 0.23 -2.0
166,774 - GFF2762 0.24 -1.6
166,792 + GFF2762 0.25 -1.0
166,811 + GFF2762 0.25 -1.3
166,914 + GFF2762 0.30 -1.3
166,925 + GFF2762 0.30 -1.0
166,977 + GFF2762 0.32 -0.3
166,978 - GFF2762 0.32 -1.3
167,086 + GFF2762 0.36 -1.6
167,106 + GFF2762 0.37 -1.8
167,115 + GFF2762 0.38 -0.8
167,137 + GFF2762 0.38 -1.3
167,242 + GFF2762 0.43 -1.0
167,384 - GFF2762 0.48 -1.6
167,796 + GFF2762 0.65 -1.3
167,881 - GFF2762 0.68 -1.0
167,890 + GFF2762 0.69 +0.6
167,890 + GFF2762 0.69 -1.8
167,891 - GFF2762 0.69 -1.6
167,932 + GFF2762 0.70 +0.0
167,932 + GFF2762 0.70 -1.3
167,933 - GFF2762 0.70 -1.6
167,935 - GFF2762 0.70 -1.3
167,968 - GFF2762 0.72 -1.3
168,111 + GFF2762 0.77 -0.6
168,116 - GFF2762 0.78 -0.6
168,207 + GFF2762 0.81 +0.0
168,239 + GFF2762 0.83 -1.6
168,243 + GFF2762 0.83 -1.8
168,243 + GFF2762 0.83 -1.0
168,364 + GFF2762 0.88 -1.7
168,403 - GFF2762 0.89 -1.3
168,418 + GFF2762 0.90 -2.1
168,456 + -1.0
168,494 + -1.0
168,494 + -0.2
168,495 - -1.0
168,514 + -1.0
168,514 + -2.3
168,547 + -1.6
168,574 - -1.3
168,635 - -1.0
168,674 - -0.4
168,740 + -0.1
168,740 + -1.6
168,740 + -0.6
168,875 + GFF2763 0.13 -1.0
168,887 + GFF2763 0.15 -0.0
169,027 - GFF2763 0.33 -0.9
169,027 - GFF2763 0.33 -1.0
169,097 + GFF2763 0.42 +0.9
169,097 + GFF2763 0.42 -1.3
169,097 + GFF2763 0.42 -1.3
169,097 + GFF2763 0.42 -1.0
169,098 - GFF2763 0.42 +0.0
169,258 + GFF2763 0.63 -1.1
169,259 - GFF2763 0.63 +0.2
169,259 - GFF2763 0.63 -0.8
169,259 - GFF2763 0.63 -2.3
169,344 + GFF2763 0.74 -0.3
169,344 + GFF2763 0.74 +1.0
169,344 + GFF2763 0.74 -1.0
169,344 + GFF2763 0.74 +0.1
169,344 + GFF2763 0.74 -0.3
169,344 + GFF2763 0.74 -0.6
169,344 + GFF2763 0.74 +0.2
169,345 - GFF2763 0.74 -1.0
169,345 - GFF2763 0.74 -0.2
169,348 + GFF2763 0.74 +0.4
169,348 + GFF2763 0.74 -0.4
169,348 + GFF2763 0.74 -0.0
169,348 + GFF2763 0.74 +0.0
169,348 + GFF2763 0.74 -1.0
169,348 + GFF2763 0.74 +0.4
169,348 + GFF2763 0.74 +0.2
169,348 + GFF2763 0.74 +0.0
169,348 + GFF2763 0.74 +0.0
169,348 + GFF2763 0.74 -0.3
169,348 + GFF2763 0.74 -0.0
169,348 + GFF2763 0.74 +0.0
169,349 - GFF2763 0.74 -1.6
169,349 - GFF2763 0.74 -0.3
169,349 - GFF2763 0.74 -0.2
169,349 - GFF2763 0.74 -0.6
169,349 - GFF2763 0.74 +0.6
169,349 - GFF2763 0.74 +0.3
169,349 - GFF2763 0.74 +0.2
169,350 + GFF2763 0.75 +0.4
169,350 + GFF2763 0.75 -1.0
169,350 + GFF2763 0.75 +0.2
169,350 + GFF2763 0.75 -0.2
169,351 - GFF2763 0.75 -1.5
169,351 - GFF2763 0.75 -0.8
169,357 + GFF2763 0.75 +0.1
169,357 + GFF2763 0.75 -1.6
169,357 + GFF2763 0.75 +0.1
169,357 + GFF2763 0.75 -0.6
169,357 + GFF2763 0.75 -1.6
169,357 + GFF2763 0.75 -1.0
169,357 + GFF2763 0.75 -0.7
169,358 - GFF2763 0.76 -0.6
169,358 - GFF2763 0.76 -1.6
169,358 - GFF2763 0.76 -1.3
169,407 + GFF2763 0.82 -0.7
169,407 + GFF2763 0.82 -1.8
169,407 + GFF2763 0.82 -0.8
169,417 + GFF2763 0.83 -0.4
169,417 + GFF2763 0.83 -1.6
169,417 + GFF2763 0.83 +0.3
169,417 + GFF2763 0.83 -0.4
169,417 + GFF2763 0.83 -2.0
169,417 + GFF2763 0.83 +1.3
169,417 + GFF2763 0.83 -0.1
169,417 + GFF2763 0.83 +0.2
169,417 + GFF2763 0.83 +0.6
169,436 + GFF2763 0.86 -2.4
169,543 + -0.8
169,543 + +0.3
169,543 + -0.6
169,544 - -2.8
169,633 - +0.3
169,633 - +0.4
169,641 + -1.0
169,641 + +0.5
169,642 - -1.1
169,642 - +0.4
169,644 + -0.4
169,645 - -0.6
169,661 + -0.7
169,661 + -0.6
169,661 + +1.3
169,661 + -0.9
169,661 + -0.4
169,662 - -1.0
169,662 - -0.2
169,662 - -1.3

Or see this region's nucleotide sequence