Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2732 and GFF2733 are separated by 239 nucleotides GFF2733 and GFF2734 are separated by 70 nucleotides GFF2734 and GFF2735 are separated by 279 nucleotides
GFF2732 - Sigma-E factor regulatory protein RseB, at 134,871 to 135,824
GFF2732
GFF2733 - Periplasmic serine endoprotease DegP, at 136,064 to 137,485
GFF2733
GFF2734 - hypothetical protein, at 137,556 to 138,113
GFF2734
GFF2735 - Elongation factor 4, at 138,393 to 140,192
GFF2735
Position (kb) 136
137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 135.112 kb on + strand, within GFF2732 at 135.112 kb on + strand, within GFF2732 at 135.131 kb on + strand, within GFF2732 at 135.131 kb on + strand, within GFF2732 at 135.131 kb on + strand, within GFF2732 at 135.132 kb on - strand, within GFF2732 at 135.132 kb on - strand, within GFF2732 at 135.132 kb on - strand, within GFF2732 at 135.143 kb on + strand, within GFF2732 at 135.143 kb on + strand, within GFF2732 at 135.149 kb on + strand, within GFF2732 at 135.223 kb on - strand, within GFF2732 at 135.223 kb on - strand, within GFF2732 at 135.309 kb on - strand, within GFF2732 at 135.354 kb on + strand, within GFF2732 at 135.386 kb on + strand, within GFF2732 at 135.398 kb on + strand, within GFF2732 at 135.398 kb on + strand, within GFF2732 at 135.398 kb on + strand, within GFF2732 at 135.398 kb on + strand, within GFF2732 at 135.398 kb on + strand, within GFF2732 at 135.398 kb on + strand, within GFF2732 at 135.399 kb on - strand, within GFF2732 at 135.399 kb on - strand, within GFF2732 at 135.399 kb on - strand, within GFF2732 at 135.399 kb on - strand, within GFF2732 at 135.399 kb on - strand, within GFF2732 at 135.431 kb on + strand, within GFF2732 at 135.431 kb on + strand, within GFF2732 at 135.431 kb on + strand, within GFF2732 at 135.431 kb on + strand, within GFF2732 at 135.431 kb on + strand, within GFF2732 at 135.431 kb on + strand, within GFF2732 at 135.432 kb on - strand, within GFF2732 at 135.432 kb on - strand, within GFF2732 at 135.432 kb on - strand, within GFF2732 at 135.432 kb on - strand, within GFF2732 at 135.432 kb on - strand, within GFF2732 at 135.489 kb on + strand, within GFF2732 at 135.489 kb on + strand, within GFF2732 at 135.489 kb on + strand, within GFF2732 at 135.489 kb on + strand, within GFF2732 at 135.489 kb on + strand, within GFF2732 at 135.489 kb on + strand, within GFF2732 at 135.489 kb on + strand, within GFF2732 at 135.489 kb on + strand, within GFF2732 at 135.490 kb on - strand, within GFF2732 at 135.490 kb on - strand, within GFF2732 at 135.490 kb on - strand, within GFF2732 at 135.490 kb on - strand, within GFF2732 at 135.490 kb on - strand, within GFF2732 at 135.490 kb on - strand, within GFF2732 at 135.490 kb on - strand, within GFF2732 at 135.490 kb on - strand, within GFF2732 at 135.490 kb on - strand, within GFF2732 at 135.490 kb on - strand, within GFF2732 at 135.515 kb on + strand, within GFF2732 at 135.515 kb on + strand, within GFF2732 at 135.515 kb on + strand, within GFF2732 at 135.515 kb on + strand, within GFF2732 at 135.516 kb on - strand, within GFF2732 at 135.516 kb on - strand, within GFF2732 at 135.523 kb on + strand, within GFF2732 at 135.523 kb on + strand, within GFF2732 at 135.523 kb on + strand, within GFF2732 at 135.523 kb on + strand, within GFF2732 at 135.523 kb on + strand, within GFF2732 at 135.523 kb on + strand, within GFF2732 at 135.523 kb on + strand, within GFF2732 at 135.523 kb on + strand, within GFF2732 at 135.561 kb on + strand, within GFF2732 at 135.562 kb on - strand, within GFF2732 at 135.564 kb on - strand, within GFF2732 at 135.564 kb on - strand, within GFF2732 at 135.586 kb on + strand, within GFF2732 at 135.586 kb on + strand, within GFF2732 at 135.716 kb on + strand, within GFF2732 at 135.716 kb on + strand, within GFF2732 at 135.716 kb on + strand, within GFF2732 at 135.726 kb on + strand, within GFF2732 at 135.726 kb on + strand, within GFF2732 at 135.726 kb on + strand, within GFF2732 at 135.726 kb on + strand, within GFF2732 at 135.726 kb on + strand, within GFF2732 at 135.727 kb on - strand, within GFF2732 at 135.727 kb on - strand, within GFF2732 at 135.747 kb on + strand at 135.882 kb on + strand at 135.882 kb on + strand at 135.882 kb on + strand at 135.893 kb on + strand at 135.893 kb on + strand at 135.894 kb on - strand at 135.913 kb on + strand at 135.913 kb on + strand at 135.913 kb on + strand at 135.913 kb on + strand at 135.948 kb on + strand at 135.948 kb on + strand at 135.948 kb on + strand at 135.948 kb on + strand at 135.948 kb on + strand at 135.949 kb on - strand at 135.971 kb on + strand at 135.971 kb on + strand at 135.971 kb on + strand at 135.971 kb on + strand at 135.971 kb on + strand at 135.971 kb on + strand at 135.971 kb on + strand at 135.971 kb on + strand at 135.971 kb on + strand at 135.971 kb on + strand at 135.972 kb on - strand at 135.980 kb on + strand at 135.980 kb on + strand at 135.980 kb on + strand at 135.980 kb on + strand at 135.980 kb on + strand at 135.981 kb on - strand at 136.015 kb on + strand at 136.016 kb on - strand at 136.029 kb on + strand at 136.036 kb on + strand at 136.036 kb on + strand at 136.037 kb on - strand at 136.040 kb on - strand at 136.046 kb on + strand at 136.053 kb on + strand at 136.059 kb on + strand at 136.060 kb on - strand at 136.060 kb on - strand at 136.159 kb on + strand at 136.198 kb on + strand at 136.198 kb on + strand at 136.207 kb on + strand, within GFF2733 at 136.207 kb on + strand, within GFF2733 at 136.207 kb on + strand, within GFF2733 at 136.208 kb on - strand, within GFF2733 at 136.340 kb on + strand, within GFF2733 at 136.389 kb on - strand, within GFF2733 at 136.390 kb on + strand, within GFF2733 at 136.390 kb on + strand, within GFF2733 at 136.445 kb on + strand, within GFF2733 at 136.445 kb on + strand, within GFF2733 at 136.474 kb on + strand, within GFF2733 at 136.510 kb on + strand, within GFF2733 at 136.511 kb on - strand, within GFF2733 at 136.671 kb on - strand, within GFF2733 at 136.671 kb on - strand, within GFF2733 at 136.671 kb on - strand, within GFF2733 at 136.728 kb on + strand, within GFF2733 at 136.728 kb on + strand, within GFF2733 at 136.732 kb on + strand, within GFF2733 at 136.733 kb on - strand, within GFF2733 at 136.772 kb on + strand, within GFF2733 at 136.772 kb on + strand, within GFF2733 at 136.772 kb on + strand, within GFF2733 at 136.772 kb on + strand, within GFF2733 at 136.774 kb on + strand, within GFF2733 at 136.811 kb on - strand, within GFF2733 at 136.834 kb on + strand, within GFF2733 at 136.834 kb on + strand, within GFF2733 at 136.834 kb on + strand, within GFF2733 at 137.014 kb on + strand, within GFF2733 at 137.014 kb on + strand, within GFF2733 at 137.014 kb on + strand, within GFF2733 at 137.015 kb on - strand, within GFF2733 at 137.015 kb on - strand, within GFF2733 at 137.223 kb on + strand, within GFF2733 at 137.224 kb on - strand, within GFF2733 at 137.359 kb on + strand at 137.452 kb on + strand at 137.452 kb on + strand at 137.453 kb on - strand at 137.453 kb on - strand at 137.462 kb on + strand at 137.462 kb on + strand at 137.462 kb on + strand at 137.462 kb on + strand at 137.462 kb on + strand at 137.462 kb on + strand at 137.462 kb on + strand at 137.463 kb on - strand at 137.463 kb on - strand at 137.483 kb on + strand at 137.557 kb on + strand at 137.557 kb on + strand at 137.558 kb on - strand at 137.576 kb on + strand at 137.576 kb on + strand at 137.577 kb on - strand at 137.577 kb on - strand at 137.577 kb on - strand at 137.596 kb on - strand at 137.596 kb on - strand at 137.628 kb on - strand, within GFF2734 at 137.628 kb on - strand, within GFF2734 at 137.669 kb on + strand, within GFF2734 at 137.669 kb on + strand, within GFF2734 at 137.690 kb on + strand, within GFF2734 at 137.765 kb on - strand, within GFF2734 at 137.765 kb on - strand, within GFF2734 at 137.820 kb on + strand, within GFF2734 at 137.820 kb on + strand, within GFF2734 at 137.820 kb on + strand, within GFF2734 at 137.823 kb on + strand, within GFF2734 at 137.823 kb on + strand, within GFF2734 at 137.823 kb on + strand, within GFF2734 at 137.824 kb on - strand, within GFF2734 at 137.824 kb on - strand, within GFF2734 at 137.824 kb on - strand, within GFF2734 at 137.824 kb on - strand, within GFF2734 at 137.824 kb on - strand, within GFF2734 at 137.842 kb on + strand, within GFF2734 at 137.843 kb on - strand, within GFF2734 at 137.843 kb on - strand, within GFF2734 at 137.843 kb on - strand, within GFF2734 at 137.843 kb on - strand, within GFF2734 at 137.872 kb on - strand, within GFF2734 at 138.093 kb on + strand at 138.109 kb on + strand at 138.110 kb on - strand at 138.113 kb on + strand at 138.114 kb on - strand at 138.114 kb on - strand at 138.114 kb on - strand at 138.114 kb on - strand at 138.120 kb on + strand at 138.121 kb on - strand at 138.121 kb on - strand at 138.121 kb on - strand at 138.133 kb on - strand at 138.133 kb on - strand at 138.183 kb on + strand at 138.184 kb on - strand at 138.184 kb on - strand at 138.266 kb on + strand at 138.266 kb on + strand at 138.267 kb on - strand at 138.267 kb on - strand at 138.267 kb on - strand at 138.268 kb on + strand at 138.298 kb on + strand at 138.298 kb on + strand at 138.299 kb on - strand at 138.299 kb on - strand at 138.309 kb on + strand at 138.309 kb on + strand at 138.309 kb on + strand at 138.310 kb on - strand at 138.373 kb on + strand at 138.373 kb on + strand at 138.373 kb on + strand at 138.373 kb on + strand at 138.374 kb on - strand at 138.374 kb on - strand at 138.377 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 135,112 + GFF2732 0.25 +0.9 135,112 + GFF2732 0.25 +1.8 135,131 + GFF2732 0.27 +1.6 135,131 + GFF2732 0.27 +1.5 135,131 + GFF2732 0.27 +1.5 135,132 - GFF2732 0.27 +1.2 135,132 - GFF2732 0.27 +0.7 135,132 - GFF2732 0.27 +1.0 135,143 + GFF2732 0.29 +1.0 135,143 + GFF2732 0.29 +0.8 135,149 + GFF2732 0.29 +1.1 135,223 - GFF2732 0.37 +0.3 135,223 - GFF2732 0.37 -0.7 135,309 - GFF2732 0.46 +1.0 135,354 + GFF2732 0.51 +0.6 135,386 + GFF2732 0.54 +1.3 135,398 + GFF2732 0.55 +0.7 135,398 + GFF2732 0.55 +0.7 135,398 + GFF2732 0.55 +1.1 135,398 + GFF2732 0.55 +1.3 135,398 + GFF2732 0.55 +0.9 135,398 + GFF2732 0.55 -0.3 135,399 - GFF2732 0.55 +0.2 135,399 - GFF2732 0.55 +1.1 135,399 - GFF2732 0.55 +2.3 135,399 - GFF2732 0.55 +0.1 135,399 - GFF2732 0.55 +0.5 135,431 + GFF2732 0.59 -0.2 135,431 + GFF2732 0.59 +0.7 135,431 + GFF2732 0.59 +1.1 135,431 + GFF2732 0.59 +1.2 135,431 + GFF2732 0.59 +1.1 135,431 + GFF2732 0.59 +0.8 135,432 - GFF2732 0.59 -0.3 135,432 - GFF2732 0.59 -0.5 135,432 - GFF2732 0.59 +1.0 135,432 - GFF2732 0.59 +0.9 135,432 - GFF2732 0.59 +1.5 135,489 + GFF2732 0.65 +1.0 135,489 + GFF2732 0.65 +1.0 135,489 + GFF2732 0.65 +0.9 135,489 + GFF2732 0.65 +0.9 135,489 + GFF2732 0.65 +0.5 135,489 + GFF2732 0.65 +0.8 135,489 + GFF2732 0.65 +2.3 135,489 + GFF2732 0.65 +1.4 135,490 - GFF2732 0.65 +0.7 135,490 - GFF2732 0.65 +1.0 135,490 - GFF2732 0.65 +0.5 135,490 - GFF2732 0.65 +1.0 135,490 - GFF2732 0.65 +1.3 135,490 - GFF2732 0.65 +0.7 135,490 - GFF2732 0.65 +0.4 135,490 - GFF2732 0.65 +1.4 135,490 - GFF2732 0.65 +1.1 135,490 - GFF2732 0.65 +0.3 135,515 + GFF2732 0.68 -1.0 135,515 + GFF2732 0.68 +0.7 135,515 + GFF2732 0.68 +0.0 135,515 + GFF2732 0.68 +0.9 135,516 - GFF2732 0.68 +0.2 135,516 - GFF2732 0.68 +1.2 135,523 + GFF2732 0.68 +0.9 135,523 + GFF2732 0.68 +1.0 135,523 + GFF2732 0.68 +0.8 135,523 + GFF2732 0.68 +1.5 135,523 + GFF2732 0.68 +0.8 135,523 + GFF2732 0.68 +1.1 135,523 + GFF2732 0.68 +1.1 135,523 + GFF2732 0.68 +1.2 135,561 + GFF2732 0.72 +1.0 135,562 - GFF2732 0.72 +0.8 135,564 - GFF2732 0.73 +1.7 135,564 - GFF2732 0.73 +0.8 135,586 + GFF2732 0.75 +0.6 135,586 + GFF2732 0.75 -0.8 135,716 + GFF2732 0.89 +1.1 135,716 + GFF2732 0.89 +1.0 135,716 + GFF2732 0.89 +1.1 135,726 + GFF2732 0.90 +0.7 135,726 + GFF2732 0.90 +0.6 135,726 + GFF2732 0.90 +0.6 135,726 + GFF2732 0.90 +0.6 135,726 + GFF2732 0.90 +0.8 135,727 - GFF2732 0.90 +0.2 135,727 - GFF2732 0.90 +0.7 135,747 + +0.9 135,882 + -1.3 135,882 + -0.8 135,882 + -1.0 135,893 + +0.3 135,893 + +0.4 135,894 - -0.6 135,913 + +1.0 135,913 + -0.3 135,913 + -1.9 135,913 + -1.1 135,948 + -0.6 135,948 + -0.4 135,948 + -0.6 135,948 + -0.6 135,948 + -0.6 135,949 - -1.1 135,971 + +0.3 135,971 + -1.5 135,971 + -1.0 135,971 + -1.0 135,971 + -1.6 135,971 + -1.6 135,971 + -0.7 135,971 + -0.1 135,971 + +0.8 135,971 + -1.3 135,972 - -1.0 135,980 + -1.3 135,980 + +0.4 135,980 + +0.0 135,980 + +0.7 135,980 + +0.2 135,981 - -0.8 136,015 + -0.3 136,016 - -1.1 136,029 + -0.5 136,036 + -1.0 136,036 + -1.8 136,037 - -1.0 136,040 - -1.6 136,046 + -1.1 136,053 + -1.0 136,059 + -0.6 136,060 - -1.0 136,060 - -0.9 136,159 + +0.4 136,198 + -1.3 136,198 + -2.8 136,207 + GFF2733 0.10 +0.0 136,207 + GFF2733 0.10 +1.0 136,207 + GFF2733 0.10 -1.2 136,208 - GFF2733 0.10 +0.6 136,340 + GFF2733 0.19 -1.3 136,389 - GFF2733 0.23 -0.6 136,390 + GFF2733 0.23 -0.9 136,390 + GFF2733 0.23 -1.3 136,445 + GFF2733 0.27 -1.0 136,445 + GFF2733 0.27 -1.8 136,474 + GFF2733 0.29 -1.6 136,510 + GFF2733 0.31 -1.9 136,511 - GFF2733 0.31 -1.6 136,671 - GFF2733 0.43 -0.6 136,671 - GFF2733 0.43 +0.4 136,671 - GFF2733 0.43 -0.8 136,728 + GFF2733 0.47 -0.7 136,728 + GFF2733 0.47 -0.6 136,732 + GFF2733 0.47 -1.0 136,733 - GFF2733 0.47 -2.4 136,772 + GFF2733 0.50 -1.6 136,772 + GFF2733 0.50 -2.0 136,772 + GFF2733 0.50 -1.1 136,772 + GFF2733 0.50 -0.3 136,774 + GFF2733 0.50 -1.0 136,811 - GFF2733 0.53 -1.0 136,834 + GFF2733 0.54 -0.6 136,834 + GFF2733 0.54 +1.0 136,834 + GFF2733 0.54 -0.4 137,014 + GFF2733 0.67 -1.1 137,014 + GFF2733 0.67 -1.8 137,014 + GFF2733 0.67 +1.0 137,015 - GFF2733 0.67 -1.0 137,015 - GFF2733 0.67 +0.4 137,223 + GFF2733 0.82 -1.6 137,224 - GFF2733 0.82 +0.0 137,359 + -1.1 137,452 + -1.3 137,452 + +0.2 137,453 - -1.8 137,453 - -1.0 137,462 + -0.8 137,462 + -0.6 137,462 + -1.1 137,462 + +1.0 137,462 + +0.3 137,462 + -0.9 137,462 + -0.4 137,463 - -1.6 137,463 - +0.0 137,483 + +1.6 137,557 + +1.2 137,557 + -0.8 137,558 - +0.0 137,576 + -0.4 137,576 + +0.7 137,577 - +0.0 137,577 - -0.3 137,577 - -0.4 137,596 - -1.0 137,596 - +0.3 137,628 - GFF2734 0.13 -0.1 137,628 - GFF2734 0.13 -1.0 137,669 + GFF2734 0.20 -2.1 137,669 + GFF2734 0.20 -0.1 137,690 + GFF2734 0.24 +0.5 137,765 - GFF2734 0.37 -1.3 137,765 - GFF2734 0.37 +0.6 137,820 + GFF2734 0.47 +0.0 137,820 + GFF2734 0.47 -1.4 137,820 + GFF2734 0.47 -0.4 137,823 + GFF2734 0.48 -0.3 137,823 + GFF2734 0.48 -2.1 137,823 + GFF2734 0.48 -1.0 137,824 - GFF2734 0.48 -1.0 137,824 - GFF2734 0.48 +0.4 137,824 - GFF2734 0.48 -0.4 137,824 - GFF2734 0.48 +0.0 137,824 - GFF2734 0.48 +0.4 137,842 + GFF2734 0.51 -0.2 137,843 - GFF2734 0.51 -1.0 137,843 - GFF2734 0.51 -1.8 137,843 - GFF2734 0.51 -0.2 137,843 - GFF2734 0.51 -1.3 137,872 - GFF2734 0.57 +0.6 138,093 + -0.8 138,109 + -0.3 138,110 - -0.3 138,113 + +0.2 138,114 - -0.6 138,114 - +0.4 138,114 - -0.6 138,114 - -1.4 138,120 + +0.0 138,121 - -1.8 138,121 - -1.1 138,121 - -0.3 138,133 - -1.1 138,133 - -0.3 138,183 + -1.0 138,184 - -0.8 138,184 - -1.3 138,266 + -0.6 138,266 + +0.1 138,267 - -1.0 138,267 - -0.0 138,267 - -1.5 138,268 + -1.3 138,298 + -0.5 138,298 + -0.6 138,299 - +1.3 138,299 - +0.6 138,309 + -0.6 138,309 + +0.2 138,309 + +0.2 138,310 - -1.3 138,373 + -0.2 138,373 + -0.0 138,373 + +0.1 138,373 + -0.7 138,374 - -0.1 138,374 - -1.0 138,377 + -0.4
Or see this region's nucleotide sequence