Strain Fitness in Methylophilus sp. DMC18 around GFF2667

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2665 and GFF2666 overlap by 4 nucleotidesGFF2666 and GFF2667 overlap by 4 nucleotidesGFF2667 and GFF2668 are separated by 31 nucleotidesGFF2668 and GFF2669 overlap by 1 nucleotides GFF2665 - hypothetical protein, at 61,021 to 61,893 GFF2665 GFF2666 - 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE, at 61,890 to 62,258 GFF2666 GFF2667 - Thermostable monoacylglycerol lipase, at 62,255 to 63,094 GFF2667 GFF2668 - Acyl carrier protein, at 63,126 to 63,380 GFF2668 GFF2669 - 3-oxoacyl-[acyl-carrier-protein] synthase 2, at 63,380 to 64,618 GFF2669 Position (kb) 62 63 64Strain fitness (log2 ratio) -3 -2 -1 0 1at 61.330 kb on + strand, within GFF2665at 61.331 kb on - strand, within GFF2665at 61.342 kb on - strand, within GFF2665at 61.445 kb on + strand, within GFF2665at 61.446 kb on - strand, within GFF2665at 61.576 kb on + strand, within GFF2665at 61.580 kb on + strand, within GFF2665at 61.580 kb on + strand, within GFF2665at 61.581 kb on - strand, within GFF2665at 61.581 kb on - strand, within GFF2665at 61.581 kb on - strand, within GFF2665at 61.581 kb on - strand, within GFF2665at 61.581 kb on - strand, within GFF2665at 61.597 kb on + strand, within GFF2665at 61.597 kb on + strand, within GFF2665at 61.597 kb on + strand, within GFF2665at 61.597 kb on + strand, within GFF2665at 61.597 kb on + strand, within GFF2665at 61.598 kb on - strand, within GFF2665at 61.598 kb on - strand, within GFF2665at 61.598 kb on - strand, within GFF2665at 61.598 kb on - strand, within GFF2665at 61.598 kb on - strand, within GFF2665at 61.598 kb on - strand, within GFF2665at 61.599 kb on + strand, within GFF2665at 61.600 kb on - strand, within GFF2665at 61.710 kb on + strand, within GFF2665at 61.710 kb on + strand, within GFF2665at 61.711 kb on - strand, within GFF2665at 61.711 kb on - strand, within GFF2665at 61.721 kb on + strand, within GFF2665at 61.721 kb on + strand, within GFF2665at 61.721 kb on + strand, within GFF2665at 61.721 kb on + strand, within GFF2665at 61.721 kb on + strand, within GFF2665at 61.721 kb on + strand, within GFF2665at 61.722 kb on - strand, within GFF2665at 61.722 kb on - strand, within GFF2665at 61.731 kb on + strand, within GFF2665at 61.732 kb on - strand, within GFF2665at 61.790 kb on - strand, within GFF2665at 61.790 kb on - strand, within GFF2665at 61.793 kb on + strand, within GFF2665at 61.793 kb on + strand, within GFF2665at 61.897 kb on + strandat 61.897 kb on + strandat 61.897 kb on + strandat 61.897 kb on + strandat 61.898 kb on - strandat 61.898 kb on - strandat 61.898 kb on - strandat 61.898 kb on - strandat 61.912 kb on + strandat 61.912 kb on + strandat 61.913 kb on - strandat 61.913 kb on - strandat 61.958 kb on + strand, within GFF2666at 61.959 kb on - strand, within GFF2666at 62.062 kb on - strand, within GFF2666at 62.073 kb on + strand, within GFF2666at 62.087 kb on + strand, within GFF2666at 62.088 kb on - strand, within GFF2666at 62.091 kb on + strand, within GFF2666at 62.091 kb on + strand, within GFF2666at 62.091 kb on + strand, within GFF2666at 62.092 kb on - strand, within GFF2666at 62.092 kb on - strand, within GFF2666at 62.092 kb on - strand, within GFF2666at 62.130 kb on + strand, within GFF2666at 62.130 kb on + strand, within GFF2666at 62.130 kb on + strand, within GFF2666at 62.130 kb on + strand, within GFF2666at 62.130 kb on + strand, within GFF2666at 62.130 kb on + strand, within GFF2666at 62.131 kb on - strand, within GFF2666at 62.131 kb on - strand, within GFF2666at 62.131 kb on - strand, within GFF2666at 62.131 kb on - strand, within GFF2666at 62.131 kb on - strand, within GFF2666at 62.132 kb on + strand, within GFF2666at 62.132 kb on + strand, within GFF2666at 62.133 kb on - strand, within GFF2666at 62.133 kb on - strand, within GFF2666at 62.133 kb on - strand, within GFF2666at 62.133 kb on - strand, within GFF2666at 62.133 kb on - strand, within GFF2666at 62.133 kb on - strand, within GFF2666at 62.146 kb on + strand, within GFF2666at 62.146 kb on + strand, within GFF2666at 62.147 kb on - strand, within GFF2666at 62.323 kb on - strandat 62.366 kb on + strand, within GFF2667at 62.473 kb on + strand, within GFF2667at 62.515 kb on + strand, within GFF2667at 62.515 kb on + strand, within GFF2667at 62.515 kb on + strand, within GFF2667at 62.516 kb on - strand, within GFF2667at 62.516 kb on - strand, within GFF2667at 62.516 kb on - strand, within GFF2667at 62.516 kb on - strand, within GFF2667at 62.625 kb on + strand, within GFF2667at 62.625 kb on + strand, within GFF2667at 62.626 kb on - strand, within GFF2667at 62.626 kb on - strand, within GFF2667at 62.626 kb on - strand, within GFF2667at 62.626 kb on - strand, within GFF2667at 62.626 kb on - strand, within GFF2667at 62.627 kb on + strand, within GFF2667at 62.627 kb on + strand, within GFF2667at 62.684 kb on + strand, within GFF2667at 62.684 kb on + strand, within GFF2667at 62.730 kb on - strand, within GFF2667at 62.750 kb on - strand, within GFF2667at 62.795 kb on - strand, within GFF2667at 62.795 kb on - strand, within GFF2667at 62.840 kb on + strand, within GFF2667at 62.840 kb on + strand, within GFF2667at 62.841 kb on - strand, within GFF2667at 62.841 kb on - strand, within GFF2667at 62.841 kb on - strand, within GFF2667at 62.941 kb on + strand, within GFF2667at 62.951 kb on + strand, within GFF2667at 62.951 kb on + strand, within GFF2667at 62.952 kb on - strand, within GFF2667at 62.958 kb on + strand, within GFF2667at 62.959 kb on - strand, within GFF2667at 62.996 kb on + strand, within GFF2667at 62.996 kb on + strand, within GFF2667at 62.996 kb on + strand, within GFF2667at 62.997 kb on - strand, within GFF2667at 63.008 kb on - strand, within GFF2667at 63.011 kb on + strandat 63.012 kb on - strandat 63.099 kb on + strandat 63.099 kb on + strandat 63.100 kb on - strandat 63.110 kb on + strandat 63.110 kb on + strandat 63.110 kb on + strandat 63.111 kb on - strandat 63.111 kb on - strandat 63.114 kb on + strandat 63.114 kb on + strandat 63.114 kb on + strandat 63.114 kb on + strandat 63.114 kb on + strandat 63.114 kb on + strandat 63.114 kb on + strandat 63.115 kb on - strandat 63.115 kb on - strandat 63.115 kb on - strandat 63.115 kb on - strandat 63.115 kb on - strandat 63.115 kb on - strandat 63.115 kb on - strandat 63.135 kb on - strandat 63.135 kb on - strandat 63.143 kb on + strandat 63.143 kb on + strandat 63.144 kb on - strandat 63.203 kb on + strand, within GFF2668at 63.203 kb on + strand, within GFF2668at 63.260 kb on + strand, within GFF2668at 63.260 kb on + strand, within GFF2668at 63.282 kb on + strand, within GFF2668at 63.326 kb on - strand, within GFF2668at 63.326 kb on - strand, within GFF2668at 63.582 kb on + strand, within GFF2669at 63.583 kb on - strand, within GFF2669at 63.783 kb on + strand, within GFF2669at 63.830 kb on + strand, within GFF2669at 63.831 kb on - strand, within GFF2669at 63.974 kb on - strand, within GFF2669

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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61,330 + GFF2665 0.35 -1.6
61,331 - GFF2665 0.36 -0.6
61,342 - GFF2665 0.37 -1.6
61,445 + GFF2665 0.49 -1.0
61,446 - GFF2665 0.49 -0.1
61,576 + GFF2665 0.64 -0.9
61,580 + GFF2665 0.64 -1.6
61,580 + GFF2665 0.64 -1.0
61,581 - GFF2665 0.64 -1.8
61,581 - GFF2665 0.64 -0.3
61,581 - GFF2665 0.64 -1.3
61,581 - GFF2665 0.64 -0.7
61,581 - GFF2665 0.64 -0.3
61,597 + GFF2665 0.66 -1.2
61,597 + GFF2665 0.66 +0.2
61,597 + GFF2665 0.66 -1.8
61,597 + GFF2665 0.66 -1.4
61,597 + GFF2665 0.66 -0.6
61,598 - GFF2665 0.66 -0.3
61,598 - GFF2665 0.66 -2.1
61,598 - GFF2665 0.66 -1.0
61,598 - GFF2665 0.66 -2.0
61,598 - GFF2665 0.66 -0.8
61,598 - GFF2665 0.66 -1.3
61,599 + GFF2665 0.66 -0.6
61,600 - GFF2665 0.66 -2.1
61,710 + GFF2665 0.79 -1.7
61,710 + GFF2665 0.79 +0.2
61,711 - GFF2665 0.79 +0.6
61,711 - GFF2665 0.79 -2.0
61,721 + GFF2665 0.80 -0.8
61,721 + GFF2665 0.80 +1.0
61,721 + GFF2665 0.80 -0.2
61,721 + GFF2665 0.80 -1.0
61,721 + GFF2665 0.80 -1.0
61,721 + GFF2665 0.80 -0.4
61,722 - GFF2665 0.80 -1.2
61,722 - GFF2665 0.80 +0.3
61,731 + GFF2665 0.81 +0.6
61,732 - GFF2665 0.81 -0.3
61,790 - GFF2665 0.88 +0.5
61,790 - GFF2665 0.88 -2.1
61,793 + GFF2665 0.88 -0.6
61,793 + GFF2665 0.88 +0.4
61,897 + -0.6
61,897 + -2.3
61,897 + -0.4
61,897 + -1.3
61,898 - -2.5
61,898 - +0.0
61,898 - -1.8
61,898 - +0.0
61,912 + -0.3
61,912 + -1.3
61,913 - -1.0
61,913 - -1.3
61,958 + GFF2666 0.18 -2.4
61,959 - GFF2666 0.19 -2.1
62,062 - GFF2666 0.47 -1.1
62,073 + GFF2666 0.50 +0.7
62,087 + GFF2666 0.53 +0.0
62,088 - GFF2666 0.54 -1.0
62,091 + GFF2666 0.54 +0.7
62,091 + GFF2666 0.54 +0.0
62,091 + GFF2666 0.54 -0.4
62,092 - GFF2666 0.55 -1.4
62,092 - GFF2666 0.55 -2.0
62,092 - GFF2666 0.55 -1.6
62,130 + GFF2666 0.65 -1.2
62,130 + GFF2666 0.65 -1.3
62,130 + GFF2666 0.65 -1.6
62,130 + GFF2666 0.65 -1.0
62,130 + GFF2666 0.65 -0.8
62,130 + GFF2666 0.65 -1.4
62,131 - GFF2666 0.65 -1.3
62,131 - GFF2666 0.65 -0.8
62,131 - GFF2666 0.65 -0.7
62,131 - GFF2666 0.65 -0.2
62,131 - GFF2666 0.65 -1.7
62,132 + GFF2666 0.66 -0.2
62,132 + GFF2666 0.66 -0.1
62,133 - GFF2666 0.66 -0.3
62,133 - GFF2666 0.66 -1.0
62,133 - GFF2666 0.66 -0.6
62,133 - GFF2666 0.66 -1.5
62,133 - GFF2666 0.66 -0.6
62,133 - GFF2666 0.66 -0.8
62,146 + GFF2666 0.69 -1.8
62,146 + GFF2666 0.69 -1.4
62,147 - GFF2666 0.70 -1.2
62,323 - -0.6
62,366 + GFF2667 0.13 -2.3
62,473 + GFF2667 0.26 -1.4
62,515 + GFF2667 0.31 -1.8
62,515 + GFF2667 0.31 +0.0
62,515 + GFF2667 0.31 -0.8
62,516 - GFF2667 0.31 -2.1
62,516 - GFF2667 0.31 -1.4
62,516 - GFF2667 0.31 -0.3
62,516 - GFF2667 0.31 -0.6
62,625 + GFF2667 0.44 -0.8
62,625 + GFF2667 0.44 -1.0
62,626 - GFF2667 0.44 -2.0
62,626 - GFF2667 0.44 -1.7
62,626 - GFF2667 0.44 -2.0
62,626 - GFF2667 0.44 -1.3
62,626 - GFF2667 0.44 -1.3
62,627 + GFF2667 0.44 -0.6
62,627 + GFF2667 0.44 -1.8
62,684 + GFF2667 0.51 -1.3
62,684 + GFF2667 0.51 -1.0
62,730 - GFF2667 0.57 -2.6
62,750 - GFF2667 0.59 -2.3
62,795 - GFF2667 0.64 -2.6
62,795 - GFF2667 0.64 -1.0
62,840 + GFF2667 0.70 -1.0
62,840 + GFF2667 0.70 -1.3
62,841 - GFF2667 0.70 -0.5
62,841 - GFF2667 0.70 -1.0
62,841 - GFF2667 0.70 +0.0
62,941 + GFF2667 0.82 +0.0
62,951 + GFF2667 0.83 -1.8
62,951 + GFF2667 0.83 -3.4
62,952 - GFF2667 0.83 -1.0
62,958 + GFF2667 0.84 +0.0
62,959 - GFF2667 0.84 -2.0
62,996 + GFF2667 0.88 -3.2
62,996 + GFF2667 0.88 -1.4
62,996 + GFF2667 0.88 +0.4
62,997 - GFF2667 0.88 -2.6
63,008 - GFF2667 0.90 -0.7
63,011 + -0.8
63,012 - +0.5
63,099 + +0.0
63,099 + -0.1
63,100 - -0.8
63,110 + -0.4
63,110 + +0.8
63,110 + +0.6
63,111 - +0.5
63,111 - -1.6
63,114 + +0.6
63,114 + -1.0
63,114 + +1.0
63,114 + -0.9
63,114 + -1.3
63,114 + -0.6
63,114 + +0.7
63,115 - -1.4
63,115 - +0.0
63,115 - -0.6
63,115 - -0.8
63,115 - -2.1
63,115 - -1.3
63,115 - -0.6
63,135 - -1.2
63,135 - +0.8
63,143 + -0.9
63,143 + +0.4
63,144 - -1.0
63,203 + GFF2668 0.30 +0.7
63,203 + GFF2668 0.30 -1.6
63,260 + GFF2668 0.53 -1.0
63,260 + GFF2668 0.53 -0.3
63,282 + GFF2668 0.61 -2.1
63,326 - GFF2668 0.78 -0.7
63,326 - GFF2668 0.78 -0.4
63,582 + GFF2669 0.16 -2.3
63,583 - GFF2669 0.16 -0.6
63,783 + GFF2669 0.33 +0.4
63,830 + GFF2669 0.36 -0.6
63,831 - GFF2669 0.36 +0.0
63,974 - GFF2669 0.48 -1.8

Or see this region's nucleotide sequence