Strain Fitness in Methylophilus sp. DMC18 around GFF2664

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2662 and GFF2663 are separated by 208 nucleotidesGFF2663 and GFF2664 are separated by 15 nucleotidesGFF2664 and GFF2665 are separated by 10 nucleotidesGFF2665 and GFF2666 overlap by 4 nucleotides GFF2662 - Transcriptional regulatory protein QseB, at 58,067 to 58,738 GFF2662 GFF2663 - 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase, at 58,947 to 59,621 GFF2663 GFF2664 - Ornithine aminotransferase, at 59,637 to 61,010 GFF2664 GFF2665 - hypothetical protein, at 61,021 to 61,893 GFF2665 GFF2666 - 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE, at 61,890 to 62,258 GFF2666 Position (kb) 59 60 61 62Strain fitness (log2 ratio) -3 -2 -1 0 1at 58.665 kb on + strand, within GFF2662at 58.666 kb on - strand, within GFF2662at 58.666 kb on - strand, within GFF2662at 58.706 kb on + strandat 58.707 kb on - strandat 58.768 kb on + strandat 58.768 kb on + strandat 58.784 kb on + strandat 58.784 kb on + strandat 58.785 kb on - strandat 58.788 kb on + strandat 58.800 kb on - strandat 58.800 kb on - strandat 58.826 kb on + strandat 58.827 kb on - strandat 58.837 kb on + strandat 58.951 kb on + strandat 58.955 kb on + strandat 59.155 kb on + strand, within GFF2663at 59.155 kb on + strand, within GFF2663at 59.162 kb on + strand, within GFF2663at 59.181 kb on - strand, within GFF2663at 59.404 kb on - strand, within GFF2663at 59.476 kb on + strand, within GFF2663at 59.476 kb on + strand, within GFF2663at 59.477 kb on - strand, within GFF2663at 59.477 kb on - strand, within GFF2663at 59.477 kb on - strand, within GFF2663at 59.680 kb on - strandat 59.680 kb on - strandat 59.706 kb on + strandat 59.707 kb on - strandat 59.707 kb on - strandat 59.707 kb on - strandat 59.707 kb on - strandat 59.776 kb on - strand, within GFF2664at 59.817 kb on + strand, within GFF2664at 59.861 kb on + strand, within GFF2664at 59.861 kb on + strand, within GFF2664at 59.861 kb on + strand, within GFF2664at 59.931 kb on + strand, within GFF2664at 59.932 kb on - strand, within GFF2664at 60.032 kb on + strand, within GFF2664at 60.053 kb on + strand, within GFF2664at 60.053 kb on + strand, within GFF2664at 60.054 kb on - strand, within GFF2664at 60.054 kb on - strand, within GFF2664at 60.095 kb on + strand, within GFF2664at 60.096 kb on - strand, within GFF2664at 60.166 kb on - strand, within GFF2664at 60.166 kb on - strand, within GFF2664at 60.213 kb on + strand, within GFF2664at 60.213 kb on + strand, within GFF2664at 60.213 kb on + strand, within GFF2664at 60.213 kb on + strand, within GFF2664at 60.213 kb on + strand, within GFF2664at 60.213 kb on + strand, within GFF2664at 60.214 kb on - strand, within GFF2664at 60.214 kb on - strand, within GFF2664at 60.214 kb on - strand, within GFF2664at 60.214 kb on - strand, within GFF2664at 60.214 kb on - strand, within GFF2664at 60.214 kb on - strand, within GFF2664at 60.214 kb on - strand, within GFF2664at 60.214 kb on - strand, within GFF2664at 60.303 kb on + strand, within GFF2664at 60.303 kb on + strand, within GFF2664at 60.314 kb on + strand, within GFF2664at 60.339 kb on - strand, within GFF2664at 60.339 kb on - strand, within GFF2664at 60.354 kb on + strand, within GFF2664at 60.355 kb on - strand, within GFF2664at 60.356 kb on + strand, within GFF2664at 60.356 kb on + strand, within GFF2664at 60.356 kb on + strand, within GFF2664at 60.356 kb on + strand, within GFF2664at 60.356 kb on + strand, within GFF2664at 60.357 kb on - strand, within GFF2664at 60.357 kb on - strand, within GFF2664at 60.357 kb on - strand, within GFF2664at 60.357 kb on - strand, within GFF2664at 60.440 kb on + strand, within GFF2664at 60.494 kb on + strand, within GFF2664at 60.494 kb on + strand, within GFF2664at 60.830 kb on + strand, within GFF2664at 60.873 kb on + strandat 60.874 kb on - strandat 60.874 kb on - strandat 61.009 kb on - strandat 61.232 kb on - strand, within GFF2665at 61.238 kb on + strand, within GFF2665at 61.240 kb on - strand, within GFF2665at 61.240 kb on - strand, within GFF2665at 61.330 kb on + strand, within GFF2665at 61.331 kb on - strand, within GFF2665at 61.342 kb on - strand, within GFF2665at 61.445 kb on + strand, within GFF2665at 61.446 kb on - strand, within GFF2665at 61.576 kb on + strand, within GFF2665at 61.580 kb on + strand, within GFF2665at 61.580 kb on + strand, within GFF2665at 61.581 kb on - strand, within GFF2665at 61.581 kb on - strand, within GFF2665at 61.581 kb on - strand, within GFF2665at 61.581 kb on - strand, within GFF2665at 61.581 kb on - strand, within GFF2665at 61.597 kb on + strand, within GFF2665at 61.597 kb on + strand, within GFF2665at 61.597 kb on + strand, within GFF2665at 61.597 kb on + strand, within GFF2665at 61.597 kb on + strand, within GFF2665at 61.598 kb on - strand, within GFF2665at 61.598 kb on - strand, within GFF2665at 61.598 kb on - strand, within GFF2665at 61.598 kb on - strand, within GFF2665at 61.598 kb on - strand, within GFF2665at 61.598 kb on - strand, within GFF2665at 61.599 kb on + strand, within GFF2665at 61.600 kb on - strand, within GFF2665at 61.710 kb on + strand, within GFF2665at 61.710 kb on + strand, within GFF2665at 61.711 kb on - strand, within GFF2665at 61.711 kb on - strand, within GFF2665at 61.721 kb on + strand, within GFF2665at 61.721 kb on + strand, within GFF2665at 61.721 kb on + strand, within GFF2665at 61.721 kb on + strand, within GFF2665at 61.721 kb on + strand, within GFF2665at 61.721 kb on + strand, within GFF2665at 61.722 kb on - strand, within GFF2665at 61.722 kb on - strand, within GFF2665at 61.731 kb on + strand, within GFF2665at 61.732 kb on - strand, within GFF2665at 61.790 kb on - strand, within GFF2665at 61.790 kb on - strand, within GFF2665at 61.793 kb on + strand, within GFF2665at 61.793 kb on + strand, within GFF2665at 61.897 kb on + strandat 61.897 kb on + strandat 61.897 kb on + strandat 61.897 kb on + strandat 61.898 kb on - strandat 61.898 kb on - strandat 61.898 kb on - strandat 61.898 kb on - strandat 61.912 kb on + strandat 61.912 kb on + strandat 61.913 kb on - strandat 61.913 kb on - strandat 61.958 kb on + strand, within GFF2666at 61.959 kb on - strand, within GFF2666

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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58,665 + GFF2662 0.89 -1.0
58,666 - GFF2662 0.89 -0.3
58,666 - GFF2662 0.89 -1.0
58,706 + -0.3
58,707 - +0.3
58,768 + -1.2
58,768 + -1.1
58,784 + +0.3
58,784 + +0.4
58,785 - +0.5
58,788 + +0.1
58,800 - -1.1
58,800 - -0.8
58,826 + -1.0
58,827 - -1.0
58,837 + -2.4
58,951 + +0.3
58,955 + -1.7
59,155 + GFF2663 0.31 -2.1
59,155 + GFF2663 0.31 -0.6
59,162 + GFF2663 0.32 -1.9
59,181 - GFF2663 0.35 -0.6
59,404 - GFF2663 0.68 -1.3
59,476 + GFF2663 0.78 +0.5
59,476 + GFF2663 0.78 -1.0
59,477 - GFF2663 0.79 -1.6
59,477 - GFF2663 0.79 -1.2
59,477 - GFF2663 0.79 -2.0
59,680 - +0.0
59,680 - +0.0
59,706 + -1.4
59,707 - -2.1
59,707 - -1.3
59,707 - +0.3
59,707 - -1.0
59,776 - GFF2664 0.10 -0.8
59,817 + GFF2664 0.13 -1.5
59,861 + GFF2664 0.16 -1.9
59,861 + GFF2664 0.16 +0.0
59,861 + GFF2664 0.16 -0.3
59,931 + GFF2664 0.21 +0.3
59,932 - GFF2664 0.21 -0.8
60,032 + GFF2664 0.29 +0.7
60,053 + GFF2664 0.30 -1.6
60,053 + GFF2664 0.30 -1.6
60,054 - GFF2664 0.30 -3.6
60,054 - GFF2664 0.30 -1.0
60,095 + GFF2664 0.33 -1.2
60,096 - GFF2664 0.33 -1.1
60,166 - GFF2664 0.39 -0.3
60,166 - GFF2664 0.39 -2.0
60,213 + GFF2664 0.42 -0.8
60,213 + GFF2664 0.42 -2.4
60,213 + GFF2664 0.42 -0.6
60,213 + GFF2664 0.42 -0.7
60,213 + GFF2664 0.42 +1.0
60,213 + GFF2664 0.42 +1.0
60,214 - GFF2664 0.42 -1.8
60,214 - GFF2664 0.42 -1.0
60,214 - GFF2664 0.42 -0.6
60,214 - GFF2664 0.42 -0.3
60,214 - GFF2664 0.42 -2.6
60,214 - GFF2664 0.42 -1.9
60,214 - GFF2664 0.42 -1.0
60,214 - GFF2664 0.42 -2.6
60,303 + GFF2664 0.48 -0.3
60,303 + GFF2664 0.48 -0.3
60,314 + GFF2664 0.49 -0.8
60,339 - GFF2664 0.51 -0.3
60,339 - GFF2664 0.51 -3.3
60,354 + GFF2664 0.52 -1.0
60,355 - GFF2664 0.52 +0.6
60,356 + GFF2664 0.52 -2.3
60,356 + GFF2664 0.52 -0.6
60,356 + GFF2664 0.52 -1.0
60,356 + GFF2664 0.52 -0.9
60,356 + GFF2664 0.52 -1.7
60,357 - GFF2664 0.52 -1.2
60,357 - GFF2664 0.52 -1.0
60,357 - GFF2664 0.52 -1.6
60,357 - GFF2664 0.52 -2.1
60,440 + GFF2664 0.58 -0.1
60,494 + GFF2664 0.62 -1.3
60,494 + GFF2664 0.62 -1.3
60,830 + GFF2664 0.87 -1.6
60,873 + -2.2
60,874 - -1.3
60,874 - -0.2
61,009 - -1.4
61,232 - GFF2665 0.24 +0.2
61,238 + GFF2665 0.25 -2.8
61,240 - GFF2665 0.25 -2.3
61,240 - GFF2665 0.25 -1.0
61,330 + GFF2665 0.35 -1.6
61,331 - GFF2665 0.36 -0.6
61,342 - GFF2665 0.37 -1.6
61,445 + GFF2665 0.49 -1.0
61,446 - GFF2665 0.49 -0.1
61,576 + GFF2665 0.64 -0.9
61,580 + GFF2665 0.64 -1.6
61,580 + GFF2665 0.64 -1.0
61,581 - GFF2665 0.64 -1.8
61,581 - GFF2665 0.64 -0.3
61,581 - GFF2665 0.64 -1.3
61,581 - GFF2665 0.64 -0.7
61,581 - GFF2665 0.64 -0.3
61,597 + GFF2665 0.66 -1.2
61,597 + GFF2665 0.66 +0.2
61,597 + GFF2665 0.66 -1.8
61,597 + GFF2665 0.66 -1.4
61,597 + GFF2665 0.66 -0.6
61,598 - GFF2665 0.66 -0.3
61,598 - GFF2665 0.66 -2.1
61,598 - GFF2665 0.66 -1.0
61,598 - GFF2665 0.66 -2.0
61,598 - GFF2665 0.66 -0.8
61,598 - GFF2665 0.66 -1.3
61,599 + GFF2665 0.66 -0.6
61,600 - GFF2665 0.66 -2.1
61,710 + GFF2665 0.79 -1.7
61,710 + GFF2665 0.79 +0.2
61,711 - GFF2665 0.79 +0.6
61,711 - GFF2665 0.79 -2.0
61,721 + GFF2665 0.80 -0.8
61,721 + GFF2665 0.80 +1.0
61,721 + GFF2665 0.80 -0.2
61,721 + GFF2665 0.80 -1.0
61,721 + GFF2665 0.80 -1.0
61,721 + GFF2665 0.80 -0.4
61,722 - GFF2665 0.80 -1.2
61,722 - GFF2665 0.80 +0.3
61,731 + GFF2665 0.81 +0.6
61,732 - GFF2665 0.81 -0.3
61,790 - GFF2665 0.88 +0.5
61,790 - GFF2665 0.88 -2.1
61,793 + GFF2665 0.88 -0.6
61,793 + GFF2665 0.88 +0.4
61,897 + -0.6
61,897 + -2.3
61,897 + -0.4
61,897 + -1.3
61,898 - -2.5
61,898 - +0.0
61,898 - -1.8
61,898 - +0.0
61,912 + -0.3
61,912 + -1.3
61,913 - -1.0
61,913 - -1.3
61,958 + GFF2666 0.18 -2.4
61,959 - GFF2666 0.19 -2.1

Or see this region's nucleotide sequence