Strain Fitness in Methylophilus sp. DMC18 around GFF2653

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2651 and GFF2652 are separated by 11 nucleotidesGFF2652 and GFF2653 are separated by 72 nucleotidesGFF2653 and GFF2654 are separated by 65 nucleotides GFF2651 - hypothetical protein, at 45,137 to 45,349 GFF2651 GFF2652 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 45,361 to 46,245 GFF2652 GFF2653 - Sodium-potassium/proton antiporter ChaA, at 46,318 to 47,412 GFF2653 GFF2654 - Thiosulfate sulfurtransferase GlpE, at 47,478 to 48,419 GFF2654 GFF2655 - Cation efflux system protein CusA, at 48,412 to 51,606 GFF2655 Position (kb) 46 47 48Strain fitness (log2 ratio) -2 -1 0 1at 45.344 kb on + strandat 45.344 kb on + strandat 45.344 kb on + strandat 45.344 kb on + strandat 45.344 kb on + strandat 45.345 kb on - strandat 45.345 kb on - strandat 45.345 kb on - strandat 45.345 kb on - strandat 45.345 kb on - strandat 45.376 kb on - strandat 45.401 kb on + strandat 45.401 kb on + strandat 45.402 kb on - strandat 45.402 kb on - strandat 45.402 kb on - strandat 45.402 kb on - strandat 45.402 kb on - strandat 45.454 kb on + strand, within GFF2652at 45.455 kb on - strand, within GFF2652at 45.455 kb on - strand, within GFF2652at 45.455 kb on - strand, within GFF2652at 45.481 kb on + strand, within GFF2652at 45.525 kb on + strand, within GFF2652at 45.526 kb on - strand, within GFF2652at 45.580 kb on + strand, within GFF2652at 45.580 kb on + strand, within GFF2652at 45.580 kb on + strand, within GFF2652at 45.580 kb on + strand, within GFF2652at 45.580 kb on + strand, within GFF2652at 45.580 kb on + strand, within GFF2652at 45.580 kb on + strand, within GFF2652at 45.580 kb on + strand, within GFF2652at 45.580 kb on + strand, within GFF2652at 45.581 kb on - strand, within GFF2652at 45.581 kb on - strand, within GFF2652at 45.581 kb on - strand, within GFF2652at 45.581 kb on - strand, within GFF2652at 45.581 kb on - strand, within GFF2652at 45.581 kb on - strand, within GFF2652at 45.581 kb on - strand, within GFF2652at 45.602 kb on + strand, within GFF2652at 45.602 kb on + strand, within GFF2652at 45.602 kb on + strand, within GFF2652at 45.603 kb on - strand, within GFF2652at 45.603 kb on - strand, within GFF2652at 45.603 kb on - strand, within GFF2652at 45.612 kb on - strand, within GFF2652at 45.626 kb on - strand, within GFF2652at 45.626 kb on - strand, within GFF2652at 45.756 kb on + strand, within GFF2652at 45.840 kb on + strand, within GFF2652at 45.841 kb on - strand, within GFF2652at 45.841 kb on - strand, within GFF2652at 45.841 kb on - strand, within GFF2652at 45.958 kb on + strand, within GFF2652at 45.958 kb on + strand, within GFF2652at 45.959 kb on - strand, within GFF2652at 45.959 kb on - strand, within GFF2652at 45.959 kb on - strand, within GFF2652at 45.959 kb on - strand, within GFF2652at 46.117 kb on - strand, within GFF2652at 46.134 kb on + strand, within GFF2652at 46.134 kb on + strand, within GFF2652at 46.243 kb on + strandat 46.284 kb on + strandat 46.285 kb on - strandat 46.285 kb on - strandat 46.311 kb on + strandat 46.312 kb on - strandat 46.375 kb on + strandat 46.375 kb on + strandat 46.375 kb on + strandat 46.376 kb on - strandat 46.398 kb on + strandat 46.461 kb on + strand, within GFF2653at 46.463 kb on + strand, within GFF2653at 46.463 kb on + strand, within GFF2653at 46.464 kb on - strand, within GFF2653at 46.481 kb on + strand, within GFF2653at 46.481 kb on + strand, within GFF2653at 46.482 kb on - strand, within GFF2653at 46.498 kb on + strand, within GFF2653at 46.498 kb on + strand, within GFF2653at 46.498 kb on + strand, within GFF2653at 46.498 kb on + strand, within GFF2653at 46.499 kb on - strand, within GFF2653at 46.499 kb on - strand, within GFF2653at 46.525 kb on + strand, within GFF2653at 46.575 kb on + strand, within GFF2653at 46.575 kb on + strand, within GFF2653at 46.575 kb on + strand, within GFF2653at 46.575 kb on + strand, within GFF2653at 46.576 kb on - strand, within GFF2653at 46.596 kb on + strand, within GFF2653at 46.596 kb on + strand, within GFF2653at 46.596 kb on + strand, within GFF2653at 46.596 kb on + strand, within GFF2653at 46.596 kb on + strand, within GFF2653at 46.596 kb on + strand, within GFF2653at 46.596 kb on + strand, within GFF2653at 46.596 kb on + strand, within GFF2653at 46.597 kb on - strand, within GFF2653at 46.597 kb on - strand, within GFF2653at 46.597 kb on - strand, within GFF2653at 46.597 kb on - strand, within GFF2653at 46.597 kb on - strand, within GFF2653at 46.630 kb on + strand, within GFF2653at 46.631 kb on - strand, within GFF2653at 46.696 kb on + strand, within GFF2653at 46.697 kb on - strand, within GFF2653at 46.697 kb on - strand, within GFF2653at 46.711 kb on + strand, within GFF2653at 46.711 kb on + strand, within GFF2653at 46.712 kb on - strand, within GFF2653at 46.712 kb on - strand, within GFF2653at 46.712 kb on - strand, within GFF2653at 46.731 kb on + strand, within GFF2653at 46.731 kb on + strand, within GFF2653at 46.731 kb on + strand, within GFF2653at 46.731 kb on + strand, within GFF2653at 46.731 kb on + strand, within GFF2653at 46.731 kb on + strand, within GFF2653at 46.732 kb on - strand, within GFF2653at 46.732 kb on - strand, within GFF2653at 46.732 kb on - strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.735 kb on + strand, within GFF2653at 46.736 kb on - strand, within GFF2653at 46.736 kb on - strand, within GFF2653at 46.736 kb on - strand, within GFF2653at 46.736 kb on - strand, within GFF2653at 46.736 kb on - strand, within GFF2653at 46.736 kb on - strand, within GFF2653at 46.736 kb on - strand, within GFF2653at 46.736 kb on - strand, within GFF2653at 46.736 kb on - strand, within GFF2653at 46.736 kb on - strand, within GFF2653at 46.736 kb on - strand, within GFF2653at 46.738 kb on - strand, within GFF2653at 46.814 kb on - strand, within GFF2653at 46.849 kb on + strand, within GFF2653at 46.849 kb on + strand, within GFF2653at 46.850 kb on - strand, within GFF2653at 46.850 kb on - strand, within GFF2653at 46.850 kb on - strand, within GFF2653at 46.850 kb on - strand, within GFF2653at 46.891 kb on + strand, within GFF2653at 46.900 kb on + strand, within GFF2653at 46.900 kb on + strand, within GFF2653at 46.956 kb on + strand, within GFF2653at 46.956 kb on + strand, within GFF2653at 46.956 kb on + strand, within GFF2653at 46.956 kb on + strand, within GFF2653at 46.957 kb on - strand, within GFF2653at 46.981 kb on + strand, within GFF2653at 46.982 kb on - strand, within GFF2653at 47.037 kb on + strand, within GFF2653at 47.037 kb on + strand, within GFF2653at 47.038 kb on - strand, within GFF2653at 47.101 kb on - strand, within GFF2653at 47.101 kb on - strand, within GFF2653at 47.166 kb on - strand, within GFF2653at 47.172 kb on + strand, within GFF2653at 47.319 kb on + strandat 47.319 kb on + strandat 47.320 kb on - strandat 47.403 kb on - strandat 47.403 kb on - strandat 47.477 kb on + strandat 47.477 kb on + strandat 47.477 kb on + strandat 47.477 kb on + strandat 47.478 kb on - strandat 47.478 kb on - strandat 47.508 kb on + strandat 47.509 kb on - strandat 47.536 kb on + strandat 47.537 kb on - strandat 47.616 kb on + strand, within GFF2654at 47.616 kb on + strand, within GFF2654at 47.617 kb on - strand, within GFF2654at 47.722 kb on + strand, within GFF2654at 47.776 kb on - strand, within GFF2654at 47.834 kb on + strand, within GFF2654at 47.835 kb on - strand, within GFF2654at 47.871 kb on + strand, within GFF2654at 47.871 kb on + strand, within GFF2654at 47.911 kb on + strand, within GFF2654at 47.911 kb on + strand, within GFF2654at 47.912 kb on - strand, within GFF2654at 48.016 kb on + strand, within GFF2654at 48.016 kb on + strand, within GFF2654at 48.016 kb on + strand, within GFF2654at 48.036 kb on - strand, within GFF2654at 48.036 kb on - strand, within GFF2654at 48.113 kb on + strand, within GFF2654at 48.113 kb on + strand, within GFF2654at 48.113 kb on + strand, within GFF2654at 48.113 kb on + strand, within GFF2654at 48.113 kb on + strand, within GFF2654at 48.113 kb on + strand, within GFF2654at 48.113 kb on + strand, within GFF2654at 48.113 kb on + strand, within GFF2654at 48.113 kb on + strand, within GFF2654at 48.113 kb on + strand, within GFF2654at 48.113 kb on + strand, within GFF2654at 48.114 kb on - strand, within GFF2654at 48.114 kb on - strand, within GFF2654at 48.114 kb on - strand, within GFF2654at 48.114 kb on - strand, within GFF2654at 48.114 kb on - strand, within GFF2654at 48.114 kb on - strand, within GFF2654at 48.114 kb on - strand, within GFF2654at 48.114 kb on - strand, within GFF2654at 48.239 kb on + strand, within GFF2654at 48.260 kb on + strand, within GFF2654at 48.261 kb on - strand, within GFF2654at 48.267 kb on + strand, within GFF2654at 48.267 kb on + strand, within GFF2654at 48.268 kb on - strand, within GFF2654at 48.268 kb on - strand, within GFF2654at 48.268 kb on - strand, within GFF2654

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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45,344 + -2.3
45,344 + +0.0
45,344 + +0.3
45,344 + -0.5
45,344 + +0.2
45,345 - -0.6
45,345 - +0.0
45,345 - +0.3
45,345 - -0.8
45,345 - +0.9
45,376 - -0.1
45,401 + +1.0
45,401 + +1.4
45,402 - +0.9
45,402 - +0.3
45,402 - -0.8
45,402 - -0.0
45,402 - +0.6
45,454 + GFF2652 0.11 +0.2
45,455 - GFF2652 0.11 -1.6
45,455 - GFF2652 0.11 +0.3
45,455 - GFF2652 0.11 -0.2
45,481 + GFF2652 0.14 -0.2
45,525 + GFF2652 0.19 +1.0
45,526 - GFF2652 0.19 +0.0
45,580 + GFF2652 0.25 +1.0
45,580 + GFF2652 0.25 +0.7
45,580 + GFF2652 0.25 -0.0
45,580 + GFF2652 0.25 +0.5
45,580 + GFF2652 0.25 +0.6
45,580 + GFF2652 0.25 +0.9
45,580 + GFF2652 0.25 -0.3
45,580 + GFF2652 0.25 +0.7
45,580 + GFF2652 0.25 +0.7
45,581 - GFF2652 0.25 +0.4
45,581 - GFF2652 0.25 -0.3
45,581 - GFF2652 0.25 +1.2
45,581 - GFF2652 0.25 +0.8
45,581 - GFF2652 0.25 +0.8
45,581 - GFF2652 0.25 +0.1
45,581 - GFF2652 0.25 -1.0
45,602 + GFF2652 0.27 +0.5
45,602 + GFF2652 0.27 -0.3
45,602 + GFF2652 0.27 -0.5
45,603 - GFF2652 0.27 -0.1
45,603 - GFF2652 0.27 +0.2
45,603 - GFF2652 0.27 +0.2
45,612 - GFF2652 0.28 +0.6
45,626 - GFF2652 0.30 +0.5
45,626 - GFF2652 0.30 -1.0
45,756 + GFF2652 0.45 -0.1
45,840 + GFF2652 0.54 +0.5
45,841 - GFF2652 0.54 +1.2
45,841 - GFF2652 0.54 +0.3
45,841 - GFF2652 0.54 +1.0
45,958 + GFF2652 0.67 +0.3
45,958 + GFF2652 0.67 +1.2
45,959 - GFF2652 0.68 +1.5
45,959 - GFF2652 0.68 +0.8
45,959 - GFF2652 0.68 +0.6
45,959 - GFF2652 0.68 -0.4
46,117 - GFF2652 0.85 -0.2
46,134 + GFF2652 0.87 +1.2
46,134 + GFF2652 0.87 +1.0
46,243 + -0.9
46,284 + +0.7
46,285 - -0.6
46,285 - -0.7
46,311 + -1.0
46,312 - -0.7
46,375 + +0.2
46,375 + +0.1
46,375 + -0.6
46,376 - -0.6
46,398 + -1.0
46,461 + GFF2653 0.13 +0.9
46,463 + GFF2653 0.13 +0.4
46,463 + GFF2653 0.13 -2.2
46,464 - GFF2653 0.13 +0.4
46,481 + GFF2653 0.15 -1.3
46,481 + GFF2653 0.15 -0.1
46,482 - GFF2653 0.15 +1.0
46,498 + GFF2653 0.16 -0.7
46,498 + GFF2653 0.16 -1.3
46,498 + GFF2653 0.16 -0.8
46,498 + GFF2653 0.16 -1.3
46,499 - GFF2653 0.17 -0.6
46,499 - GFF2653 0.17 -0.6
46,525 + GFF2653 0.19 -1.7
46,575 + GFF2653 0.23 +1.3
46,575 + GFF2653 0.23 +0.0
46,575 + GFF2653 0.23 -0.6
46,575 + GFF2653 0.23 +0.0
46,576 - GFF2653 0.24 +0.1
46,596 + GFF2653 0.25 +0.3
46,596 + GFF2653 0.25 +0.0
46,596 + GFF2653 0.25 -1.1
46,596 + GFF2653 0.25 -1.0
46,596 + GFF2653 0.25 -1.0
46,596 + GFF2653 0.25 -0.0
46,596 + GFF2653 0.25 -0.1
46,596 + GFF2653 0.25 +0.0
46,597 - GFF2653 0.25 -1.1
46,597 - GFF2653 0.25 -0.0
46,597 - GFF2653 0.25 +0.5
46,597 - GFF2653 0.25 -0.8
46,597 - GFF2653 0.25 -0.2
46,630 + GFF2653 0.28 -0.2
46,631 - GFF2653 0.29 -0.8
46,696 + GFF2653 0.35 -0.6
46,697 - GFF2653 0.35 -1.2
46,697 - GFF2653 0.35 +0.4
46,711 + GFF2653 0.36 -0.3
46,711 + GFF2653 0.36 -0.6
46,712 - GFF2653 0.36 -0.6
46,712 - GFF2653 0.36 +0.0
46,712 - GFF2653 0.36 -0.8
46,731 + GFF2653 0.38 -0.6
46,731 + GFF2653 0.38 +0.9
46,731 + GFF2653 0.38 -1.4
46,731 + GFF2653 0.38 +0.4
46,731 + GFF2653 0.38 +0.6
46,731 + GFF2653 0.38 +0.0
46,732 - GFF2653 0.38 -0.2
46,732 - GFF2653 0.38 -0.8
46,732 - GFF2653 0.38 -0.2
46,735 + GFF2653 0.38 -1.1
46,735 + GFF2653 0.38 +1.0
46,735 + GFF2653 0.38 -0.8
46,735 + GFF2653 0.38 -0.2
46,735 + GFF2653 0.38 +1.0
46,735 + GFF2653 0.38 -0.8
46,735 + GFF2653 0.38 -1.1
46,735 + GFF2653 0.38 -1.0
46,735 + GFF2653 0.38 -0.7
46,735 + GFF2653 0.38 +0.0
46,735 + GFF2653 0.38 -1.1
46,735 + GFF2653 0.38 -0.9
46,735 + GFF2653 0.38 -0.8
46,736 - GFF2653 0.38 +0.0
46,736 - GFF2653 0.38 +0.6
46,736 - GFF2653 0.38 -0.4
46,736 - GFF2653 0.38 -0.8
46,736 - GFF2653 0.38 +0.8
46,736 - GFF2653 0.38 +0.0
46,736 - GFF2653 0.38 -0.2
46,736 - GFF2653 0.38 +0.0
46,736 - GFF2653 0.38 -0.6
46,736 - GFF2653 0.38 -0.6
46,736 - GFF2653 0.38 -1.0
46,738 - GFF2653 0.38 -1.0
46,814 - GFF2653 0.45 -1.0
46,849 + GFF2653 0.48 +1.0
46,849 + GFF2653 0.48 -0.5
46,850 - GFF2653 0.49 +0.4
46,850 - GFF2653 0.49 -1.8
46,850 - GFF2653 0.49 -1.0
46,850 - GFF2653 0.49 -0.0
46,891 + GFF2653 0.52 +0.2
46,900 + GFF2653 0.53 -1.1
46,900 + GFF2653 0.53 -0.6
46,956 + GFF2653 0.58 -1.0
46,956 + GFF2653 0.58 -0.6
46,956 + GFF2653 0.58 -0.6
46,956 + GFF2653 0.58 -0.4
46,957 - GFF2653 0.58 +0.5
46,981 + GFF2653 0.61 -0.4
46,982 - GFF2653 0.61 -0.7
47,037 + GFF2653 0.66 -0.0
47,037 + GFF2653 0.66 -1.1
47,038 - GFF2653 0.66 -0.3
47,101 - GFF2653 0.72 -1.0
47,101 - GFF2653 0.72 +0.5
47,166 - GFF2653 0.77 -1.8
47,172 + GFF2653 0.78 +0.0
47,319 + -0.8
47,319 + +0.0
47,320 - -0.4
47,403 - -0.3
47,403 - -1.2
47,477 + -0.1
47,477 + +0.4
47,477 + -1.1
47,477 + +1.0
47,478 - -0.8
47,478 - -0.1
47,508 + -1.1
47,509 - +0.0
47,536 + +0.8
47,537 - +0.7
47,616 + GFF2654 0.15 -2.1
47,616 + GFF2654 0.15 -0.4
47,617 - GFF2654 0.15 -1.3
47,722 + GFF2654 0.26 +0.4
47,776 - GFF2654 0.32 -0.5
47,834 + GFF2654 0.38 +0.3
47,835 - GFF2654 0.38 -1.0
47,871 + GFF2654 0.42 -0.7
47,871 + GFF2654 0.42 +0.6
47,911 + GFF2654 0.46 -0.6
47,911 + GFF2654 0.46 +0.0
47,912 - GFF2654 0.46 -1.7
48,016 + GFF2654 0.57 +0.8
48,016 + GFF2654 0.57 +0.0
48,016 + GFF2654 0.57 -0.6
48,036 - GFF2654 0.59 +0.0
48,036 - GFF2654 0.59 -1.1
48,113 + GFF2654 0.67 +0.0
48,113 + GFF2654 0.67 -0.1
48,113 + GFF2654 0.67 +0.1
48,113 + GFF2654 0.67 -1.0
48,113 + GFF2654 0.67 -0.3
48,113 + GFF2654 0.67 -0.3
48,113 + GFF2654 0.67 +0.0
48,113 + GFF2654 0.67 +0.8
48,113 + GFF2654 0.67 -0.3
48,113 + GFF2654 0.67 -0.7
48,113 + GFF2654 0.67 -0.6
48,114 - GFF2654 0.68 -1.8
48,114 - GFF2654 0.68 +0.3
48,114 - GFF2654 0.68 -0.0
48,114 - GFF2654 0.68 -1.8
48,114 - GFF2654 0.68 -0.5
48,114 - GFF2654 0.68 +0.3
48,114 - GFF2654 0.68 -0.3
48,114 - GFF2654 0.68 -0.4
48,239 + GFF2654 0.81 -0.8
48,260 + GFF2654 0.83 -1.2
48,261 - GFF2654 0.83 -0.1
48,267 + GFF2654 0.84 -0.4
48,267 + GFF2654 0.84 -0.5
48,268 - GFF2654 0.84 +0.0
48,268 - GFF2654 0.84 -0.6
48,268 - GFF2654 0.84 -0.6

Or see this region's nucleotide sequence