Strain Fitness in Methylophilus sp. DMC18 around GFF2625

Experiment: D-Glucose and casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose and casaminos (C)
19,436	+		GFF2622	0.86	-1.2
19,436	+		GFF2622	0.86	-0.9
19,437	-		GFF2622	0.87	+1.0
19,437	-		GFF2622	0.87	-2.1
19,437	-		GFF2622	0.87	-2.8
19,437	-		GFF2622	0.87	-1.4
19,462	+		GFF2622	0.88	-2.6
19,517	+				+0.6
19,517	+				-1.0
19,517	+				-1.6
19,518	-				+0.4
19,518	-				-0.7
19,518	-				-0.9
19,525	+				+0.6
19,526	-				+0.0
19,617	-				-1.0
19,645	+				-1.3
19,649	+				-0.6
19,649	+				-1.3
19,649	+				-1.3
19,649	+				-0.8
19,649	+				-0.9
19,650	-				+0.8
19,650	-				-0.8
19,650	-				-0.1
19,650	-				-0.8
19,650	-				-2.0
19,656	+				+0.6
19,701	+				-0.9
19,712	+				-1.1
19,713	-				-0.6
19,736	+				-1.3
19,736	+				-0.5
19,736	+				-0.1
19,736	+				-0.6
19,737	-				+0.0
19,737	-				-3.5
19,739	+				-0.2
19,803	-		GFF2623	0.53	+0.2
19,816	-		GFF2623	0.67	-0.2
19,816	-		GFF2623	0.67	-1.0
19,816	-		GFF2623	0.67	-1.3
19,816	-		GFF2623	0.67	-1.0
19,836	+		GFF2623	0.88	+0.0
19,845	-				-1.0
19,884	+				-1.0
19,884	+				-1.1
19,885	-				-0.9
19,892	+		GFF2624	0.10	-0.6
19,892	+		GFF2624	0.10	+0.8
19,942	+		GFF2624	0.19	-1.0
19,942	+		GFF2624	0.19	-0.4
19,943	-		GFF2624	0.20	-2.3
19,943	-		GFF2624	0.20	-0.3
19,943	-		GFF2624	0.20	-1.4
19,943	-		GFF2624	0.20	-1.8
20,018	+		GFF2624	0.34	-1.8
20,019	-		GFF2624	0.34	-2.0
20,019	-		GFF2624	0.34	-1.8
20,024	+		GFF2624	0.35	-0.6
20,111	+		GFF2624	0.51	-1.8
20,112	-		GFF2624	0.51	-1.0
20,171	+		GFF2624	0.62	-1.4
20,171	+		GFF2624	0.62	-1.3
20,171	+		GFF2624	0.62	-2.1
20,328	-				+0.0
20,375	-				-1.8
20,375	-				-1.2
20,378	+				-1.0
20,378	+				+0.3
20,378	+				-0.7
20,378	+				+0.2
20,379	-				-1.8
20,379	-				-1.9
20,379	-				-1.3
20,379	-				-1.3
20,379	-				+0.3
20,379	-				+0.0
20,387	+				+0.4
20,388	-				-1.7
20,388	-				+0.0
20,388	-				-0.3
20,388	-				-0.8
20,411	+				-1.6
20,411	+				-1.3
20,411	+				-1.0
20,412	-				-1.3
20,412	-				-0.1
20,412	-				-1.3
20,412	-				-1.7
20,412	-				-0.2
20,423	-				-1.3
20,441	+				-1.3
20,441	+				-1.4
20,461	+				+0.6
20,554	+		GFF2625	0.15	-1.0
20,577	-		GFF2625	0.17	-0.8
20,597	+		GFF2625	0.19	-1.0
20,597	+		GFF2625	0.19	-2.4
20,598	-		GFF2625	0.19	-0.8
20,598	-		GFF2625	0.19	-0.1
20,598	-		GFF2625	0.19	-1.0
20,606	+		GFF2625	0.20	-1.6
20,606	+		GFF2625	0.20	-1.3
20,606	+		GFF2625	0.20	-2.2
20,607	-		GFF2625	0.20	-0.7
20,607	-		GFF2625	0.20	-2.0
20,607	-		GFF2625	0.20	-1.6
20,610	+		GFF2625	0.21	+0.0
20,611	-		GFF2625	0.21	-1.5
20,650	-		GFF2625	0.25	-0.6
20,685	-		GFF2625	0.29	-0.7
20,686	+		GFF2625	0.29	-0.3
20,687	-		GFF2625	0.29	-1.3
20,732	-		GFF2625	0.34	-1.0
20,732	-		GFF2625	0.34	+0.5
20,780	+		GFF2625	0.39	-0.3
20,780	+		GFF2625	0.39	-0.3
20,781	-		GFF2625	0.39	-2.3
20,781	-		GFF2625	0.39	-0.2
20,782	+		GFF2625	0.39	-0.1
20,783	-		GFF2625	0.39	-0.8
20,837	+		GFF2625	0.45	-0.4
20,838	-		GFF2625	0.45	-0.8
20,838	-		GFF2625	0.45	-0.2
20,851	-		GFF2625	0.47	+0.0
20,854	+		GFF2625	0.47	-0.2
20,854	+		GFF2625	0.47	-0.4
20,854	+		GFF2625	0.47	-1.5
20,900	+		GFF2625	0.52	+0.7
20,900	+		GFF2625	0.52	-3.2
20,901	-		GFF2625	0.52	-1.0
20,901	-		GFF2625	0.52	-1.6
20,956	+		GFF2625	0.58	-0.6
20,957	-		GFF2625	0.58	-3.3
20,957	-		GFF2625	0.58	+0.3
20,961	+		GFF2625	0.58	-2.0
20,961	+		GFF2625	0.58	-0.1
20,961	+		GFF2625	0.58	-1.6
20,962	-		GFF2625	0.58	+0.2
20,962	-		GFF2625	0.58	-2.4
20,989	+		GFF2625	0.61	-2.1
21,099	-		GFF2625	0.73	-1.8
21,110	+		GFF2625	0.74	+0.3
21,110	+		GFF2625	0.74	-0.6
21,110	+		GFF2625	0.74	-2.3
21,146	+		GFF2625	0.78	-1.2
21,208	+		GFF2625	0.85	-0.3
21,209	-		GFF2625	0.85	-1.6
21,250	+		GFF2625	0.89	+0.0
21,250	+		GFF2625	0.89	-1.8
21,291	-				-1.1
21,326	+				+1.4
21,326	+				+0.0
21,326	+				-1.8
21,326	+				-1.0
21,327	-				+0.0
21,327	-				-0.6
21,327	-				+0.7
21,328	+				-0.5
21,328	+				-1.0
21,339	-				-1.3
21,339	-				-0.8
21,339	-				-1.8
21,339	-				-0.6
21,339	-				-1.4
21,382	-				+0.0
21,386	+				-0.8
21,387	-				+0.2
21,387	-				-1.0
21,470	+		GFF2626	0.31	+1.0
21,470	+		GFF2626	0.31	+0.6
21,471	-		GFF2626	0.31	-0.7
21,471	-		GFF2626	0.31	-1.8
21,482	+		GFF2626	0.37	+1.0
21,482	+		GFF2626	0.37	-1.2
21,482	+		GFF2626	0.37	-1.0
21,483	-		GFF2626	0.37	-0.3
21,492	-		GFF2626	0.42	-1.5
21,492	-		GFF2626	0.42	+0.5
21,492	-		GFF2626	0.42	-0.2
21,500	+		GFF2626	0.46	-0.6
21,500	+		GFF2626	0.46	-1.0
21,501	-		GFF2626	0.46	-0.3
21,665	+				+0.0
21,765	+		GFF2627	0.13	-0.3
21,766	-		GFF2627	0.13	-1.0
21,846	+		GFF2627	0.25	-0.6
21,905	+		GFF2627	0.33	-0.3
21,913	+		GFF2627	0.34	+0.0
21,913	+		GFF2627	0.34	+0.7
21,913	+		GFF2627	0.34	-0.2
21,913	+		GFF2627	0.34	-0.9
21,914	-		GFF2627	0.34	-0.6
21,966	+		GFF2627	0.41	-2.3
21,967	-		GFF2627	0.42	-1.6
22,002	+		GFF2627	0.46	-1.1
22,002	+		GFF2627	0.46	-1.8
22,002	+		GFF2627	0.46	+0.0
22,002	+		GFF2627	0.46	-2.7
22,003	-		GFF2627	0.47	+0.2
22,003	-		GFF2627	0.47	-1.0
22,003	-		GFF2627	0.47	-1.4
22,088	+		GFF2627	0.59	-0.4
22,089	-		GFF2627	0.59	+0.0
22,134	+		GFF2627	0.65	-1.3
22,145	+		GFF2627	0.67	-0.6
22,145	+		GFF2627	0.67	-1.6
22,183	+		GFF2627	0.72	+0.2
22,299	+		GFF2627	0.88	+1.0
22,299	+		GFF2627	0.88	-0.1
22,299	+		GFF2627	0.88	-2.6
22,300	-		GFF2627	0.88	-0.6
22,306	+		GFF2627	0.89	+0.7
22,306	+		GFF2627	0.89	+0.6
22,306	+		GFF2627	0.89	-0.3
22,306	+		GFF2627	0.89	+0.8
22,306	+		GFF2627	0.89	-0.6
22,307	-		GFF2627	0.89	+0.6
22,307	-		GFF2627	0.89	-1.0
22,307	-		GFF2627	0.89	+0.1
22,307	-		GFF2627	0.89	-0.8
22,307	-		GFF2627	0.89	-1.4
22,307	-		GFF2627	0.89	-0.1
22,312	+				+0.0
22,312	+				-0.3
22,312	+				-0.6
22,344	+				-0.2
22,345	-				+0.8
22,345	-				-0.9