Strain Fitness in Methylophilus sp. DMC18 around GFF2624

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2622 and GFF2623 are separated by 102 nucleotidesGFF2623 and GFF2624 overlap by 10 nucleotidesGFF2624 and GFF2625 are separated by 40 nucleotides GFF2622 - Cytochrome c oxidase subunit 1, at 18,059 to 19,651 GFF2622 GFF2623 - hypothetical protein, at 19,754 to 19,846 GFF2623 GFF2624 - Cytochrome c oxidase assembly protein CtaG, at 19,837 to 20,376 GFF2624 GFF2625 - Cytochrome c oxidase subunit 3, at 20,417 to 21,349 GFF2625 Position (kb) 19 20 21Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 18.842 kb on + strand, within GFF2622at 18.842 kb on + strand, within GFF2622at 18.842 kb on + strand, within GFF2622at 18.843 kb on - strand, within GFF2622at 18.871 kb on + strand, within GFF2622at 18.907 kb on + strand, within GFF2622at 18.907 kb on + strand, within GFF2622at 18.907 kb on + strand, within GFF2622at 18.907 kb on + strand, within GFF2622at 18.908 kb on - strand, within GFF2622at 18.908 kb on - strand, within GFF2622at 18.908 kb on - strand, within GFF2622at 18.911 kb on + strand, within GFF2622at 18.911 kb on + strand, within GFF2622at 18.911 kb on + strand, within GFF2622at 18.911 kb on + strand, within GFF2622at 18.911 kb on + strand, within GFF2622at 18.911 kb on + strand, within GFF2622at 18.911 kb on + strand, within GFF2622at 18.911 kb on + strand, within GFF2622at 18.911 kb on + strand, within GFF2622at 18.911 kb on + strand, within GFF2622at 18.912 kb on - strand, within GFF2622at 18.912 kb on - strand, within GFF2622at 18.912 kb on - strand, within GFF2622at 18.912 kb on - strand, within GFF2622at 18.912 kb on - strand, within GFF2622at 18.912 kb on - strand, within GFF2622at 18.912 kb on - strand, within GFF2622at 18.912 kb on - strand, within GFF2622at 18.912 kb on - strand, within GFF2622at 18.912 kb on - strand, within GFF2622at 18.912 kb on - strand, within GFF2622at 18.912 kb on - strand, within GFF2622at 18.912 kb on - strand, within GFF2622at 18.912 kb on - strand, within GFF2622at 18.912 kb on - strand, within GFF2622at 18.912 kb on - strand, within GFF2622at 18.912 kb on - strand, within GFF2622at 18.912 kb on - strand, within GFF2622at 18.917 kb on + strand, within GFF2622at 18.918 kb on - strand, within GFF2622at 19.024 kb on + strand, within GFF2622at 19.024 kb on + strand, within GFF2622at 19.024 kb on + strand, within GFF2622at 19.024 kb on + strand, within GFF2622at 19.024 kb on + strand, within GFF2622at 19.024 kb on + strand, within GFF2622at 19.025 kb on - strand, within GFF2622at 19.025 kb on - strand, within GFF2622at 19.025 kb on - strand, within GFF2622at 19.025 kb on - strand, within GFF2622at 19.025 kb on - strand, within GFF2622at 19.025 kb on - strand, within GFF2622at 19.025 kb on - strand, within GFF2622at 19.025 kb on - strand, within GFF2622at 19.025 kb on - strand, within GFF2622at 19.028 kb on + strand, within GFF2622at 19.028 kb on + strand, within GFF2622at 19.028 kb on + strand, within GFF2622at 19.028 kb on + strand, within GFF2622at 19.028 kb on + strand, within GFF2622at 19.029 kb on - strand, within GFF2622at 19.029 kb on - strand, within GFF2622at 19.029 kb on - strand, within GFF2622at 19.029 kb on - strand, within GFF2622at 19.030 kb on + strand, within GFF2622at 19.070 kb on + strand, within GFF2622at 19.070 kb on + strand, within GFF2622at 19.070 kb on + strand, within GFF2622at 19.070 kb on + strand, within GFF2622at 19.071 kb on - strand, within GFF2622at 19.071 kb on - strand, within GFF2622at 19.071 kb on - strand, within GFF2622at 19.209 kb on - strand, within GFF2622at 19.220 kb on + strand, within GFF2622at 19.220 kb on + strand, within GFF2622at 19.220 kb on + strand, within GFF2622at 19.220 kb on + strand, within GFF2622at 19.220 kb on + strand, within GFF2622at 19.221 kb on - strand, within GFF2622at 19.221 kb on - strand, within GFF2622at 19.221 kb on - strand, within GFF2622at 19.244 kb on + strand, within GFF2622at 19.244 kb on + strand, within GFF2622at 19.245 kb on - strand, within GFF2622at 19.289 kb on + strand, within GFF2622at 19.290 kb on - strand, within GFF2622at 19.290 kb on - strand, within GFF2622at 19.290 kb on - strand, within GFF2622at 19.292 kb on + strand, within GFF2622at 19.293 kb on - strand, within GFF2622at 19.322 kb on + strand, within GFF2622at 19.322 kb on + strand, within GFF2622at 19.322 kb on + strand, within GFF2622at 19.322 kb on + strand, within GFF2622at 19.322 kb on + strand, within GFF2622at 19.322 kb on + strand, within GFF2622at 19.322 kb on + strand, within GFF2622at 19.323 kb on - strand, within GFF2622at 19.323 kb on - strand, within GFF2622at 19.323 kb on - strand, within GFF2622at 19.323 kb on - strand, within GFF2622at 19.323 kb on - strand, within GFF2622at 19.323 kb on - strand, within GFF2622at 19.323 kb on - strand, within GFF2622at 19.323 kb on - strand, within GFF2622at 19.323 kb on - strand, within GFF2622at 19.323 kb on - strand, within GFF2622at 19.324 kb on + strand, within GFF2622at 19.325 kb on - strand, within GFF2622at 19.344 kb on + strand, within GFF2622at 19.344 kb on + strand, within GFF2622at 19.344 kb on + strand, within GFF2622at 19.436 kb on + strand, within GFF2622at 19.436 kb on + strand, within GFF2622at 19.437 kb on - strand, within GFF2622at 19.437 kb on - strand, within GFF2622at 19.437 kb on - strand, within GFF2622at 19.437 kb on - strand, within GFF2622at 19.462 kb on + strand, within GFF2622at 19.517 kb on + strandat 19.517 kb on + strandat 19.517 kb on + strandat 19.518 kb on - strandat 19.518 kb on - strandat 19.518 kb on - strandat 19.525 kb on + strandat 19.526 kb on - strandat 19.617 kb on - strandat 19.645 kb on + strandat 19.649 kb on + strandat 19.649 kb on + strandat 19.649 kb on + strandat 19.649 kb on + strandat 19.649 kb on + strandat 19.650 kb on - strandat 19.650 kb on - strandat 19.650 kb on - strandat 19.650 kb on - strandat 19.650 kb on - strandat 19.656 kb on + strandat 19.701 kb on + strandat 19.712 kb on + strandat 19.713 kb on - strandat 19.736 kb on + strandat 19.736 kb on + strandat 19.736 kb on + strandat 19.736 kb on + strandat 19.737 kb on - strandat 19.737 kb on - strandat 19.739 kb on + strandat 19.803 kb on - strand, within GFF2623at 19.816 kb on - strand, within GFF2623at 19.816 kb on - strand, within GFF2623at 19.816 kb on - strand, within GFF2623at 19.816 kb on - strand, within GFF2623at 19.836 kb on + strand, within GFF2623at 19.845 kb on - strandat 19.884 kb on + strandat 19.884 kb on + strandat 19.885 kb on - strandat 19.892 kb on + strand, within GFF2624at 19.892 kb on + strand, within GFF2624at 19.942 kb on + strand, within GFF2624at 19.942 kb on + strand, within GFF2624at 19.943 kb on - strand, within GFF2624at 19.943 kb on - strand, within GFF2624at 19.943 kb on - strand, within GFF2624at 19.943 kb on - strand, within GFF2624at 20.018 kb on + strand, within GFF2624at 20.019 kb on - strand, within GFF2624at 20.019 kb on - strand, within GFF2624at 20.024 kb on + strand, within GFF2624at 20.111 kb on + strand, within GFF2624at 20.112 kb on - strand, within GFF2624at 20.171 kb on + strand, within GFF2624at 20.171 kb on + strand, within GFF2624at 20.171 kb on + strand, within GFF2624at 20.328 kb on - strandat 20.375 kb on - strandat 20.375 kb on - strandat 20.378 kb on + strandat 20.378 kb on + strandat 20.378 kb on + strandat 20.378 kb on + strandat 20.379 kb on - strandat 20.379 kb on - strandat 20.379 kb on - strandat 20.379 kb on - strandat 20.379 kb on - strandat 20.379 kb on - strandat 20.387 kb on + strandat 20.388 kb on - strandat 20.388 kb on - strandat 20.388 kb on - strandat 20.388 kb on - strandat 20.411 kb on + strandat 20.411 kb on + strandat 20.411 kb on + strandat 20.412 kb on - strandat 20.412 kb on - strandat 20.412 kb on - strandat 20.412 kb on - strandat 20.412 kb on - strandat 20.423 kb on - strandat 20.441 kb on + strandat 20.441 kb on + strandat 20.461 kb on + strandat 20.554 kb on + strand, within GFF2625at 20.577 kb on - strand, within GFF2625at 20.597 kb on + strand, within GFF2625at 20.597 kb on + strand, within GFF2625at 20.598 kb on - strand, within GFF2625at 20.598 kb on - strand, within GFF2625at 20.598 kb on - strand, within GFF2625at 20.606 kb on + strand, within GFF2625at 20.606 kb on + strand, within GFF2625at 20.606 kb on + strand, within GFF2625at 20.607 kb on - strand, within GFF2625at 20.607 kb on - strand, within GFF2625at 20.607 kb on - strand, within GFF2625at 20.610 kb on + strand, within GFF2625at 20.611 kb on - strand, within GFF2625at 20.650 kb on - strand, within GFF2625at 20.685 kb on - strand, within GFF2625at 20.686 kb on + strand, within GFF2625at 20.687 kb on - strand, within GFF2625at 20.732 kb on - strand, within GFF2625at 20.732 kb on - strand, within GFF2625at 20.780 kb on + strand, within GFF2625at 20.780 kb on + strand, within GFF2625at 20.781 kb on - strand, within GFF2625at 20.781 kb on - strand, within GFF2625at 20.782 kb on + strand, within GFF2625at 20.783 kb on - strand, within GFF2625at 20.837 kb on + strand, within GFF2625at 20.838 kb on - strand, within GFF2625at 20.838 kb on - strand, within GFF2625at 20.851 kb on - strand, within GFF2625at 20.854 kb on + strand, within GFF2625at 20.854 kb on + strand, within GFF2625at 20.854 kb on + strand, within GFF2625at 20.900 kb on + strand, within GFF2625at 20.900 kb on + strand, within GFF2625at 20.901 kb on - strand, within GFF2625at 20.901 kb on - strand, within GFF2625at 20.956 kb on + strand, within GFF2625at 20.957 kb on - strand, within GFF2625at 20.957 kb on - strand, within GFF2625at 20.961 kb on + strand, within GFF2625at 20.961 kb on + strand, within GFF2625at 20.961 kb on + strand, within GFF2625at 20.962 kb on - strand, within GFF2625at 20.962 kb on - strand, within GFF2625at 20.989 kb on + strand, within GFF2625at 21.099 kb on - strand, within GFF2625at 21.110 kb on + strand, within GFF2625at 21.110 kb on + strand, within GFF2625at 21.110 kb on + strand, within GFF2625at 21.146 kb on + strand, within GFF2625at 21.208 kb on + strand, within GFF2625at 21.209 kb on - strand, within GFF2625at 21.250 kb on + strand, within GFF2625at 21.250 kb on + strand, within GFF2625at 21.291 kb on - strandat 21.326 kb on + strandat 21.326 kb on + strandat 21.326 kb on + strandat 21.326 kb on + strandat 21.327 kb on - strandat 21.327 kb on - strandat 21.327 kb on - strandat 21.328 kb on + strandat 21.328 kb on + strandat 21.339 kb on - strandat 21.339 kb on - strandat 21.339 kb on - strandat 21.339 kb on - strandat 21.339 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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18,842 + GFF2622 0.49 -0.8
18,842 + GFF2622 0.49 -2.1
18,842 + GFF2622 0.49 -0.6
18,843 - GFF2622 0.49 -1.0
18,871 + GFF2622 0.51 -1.7
18,907 + GFF2622 0.53 -2.2
18,907 + GFF2622 0.53 -2.7
18,907 + GFF2622 0.53 -1.3
18,907 + GFF2622 0.53 -0.6
18,908 - GFF2622 0.53 -0.9
18,908 - GFF2622 0.53 -0.8
18,908 - GFF2622 0.53 -3.0
18,911 + GFF2622 0.53 -1.1
18,911 + GFF2622 0.53 -0.5
18,911 + GFF2622 0.53 -2.5
18,911 + GFF2622 0.53 +0.0
18,911 + GFF2622 0.53 -1.3
18,911 + GFF2622 0.53 -0.8
18,911 + GFF2622 0.53 -1.0
18,911 + GFF2622 0.53 -1.3
18,911 + GFF2622 0.53 -1.0
18,911 + GFF2622 0.53 -1.6
18,912 - GFF2622 0.54 -1.1
18,912 - GFF2622 0.54 -0.8
18,912 - GFF2622 0.54 -1.4
18,912 - GFF2622 0.54 -1.2
18,912 - GFF2622 0.54 -0.8
18,912 - GFF2622 0.54 -0.3
18,912 - GFF2622 0.54 -1.0
18,912 - GFF2622 0.54 -0.4
18,912 - GFF2622 0.54 -1.0
18,912 - GFF2622 0.54 -1.0
18,912 - GFF2622 0.54 -1.1
18,912 - GFF2622 0.54 +0.0
18,912 - GFF2622 0.54 -2.0
18,912 - GFF2622 0.54 -0.6
18,912 - GFF2622 0.54 +0.0
18,912 - GFF2622 0.54 -0.9
18,912 - GFF2622 0.54 -2.4
18,912 - GFF2622 0.54 +0.0
18,917 + GFF2622 0.54 -0.6
18,918 - GFF2622 0.54 -1.1
19,024 + GFF2622 0.61 +0.0
19,024 + GFF2622 0.61 -1.6
19,024 + GFF2622 0.61 +0.3
19,024 + GFF2622 0.61 -1.8
19,024 + GFF2622 0.61 +0.0
19,024 + GFF2622 0.61 +1.4
19,025 - GFF2622 0.61 -2.0
19,025 - GFF2622 0.61 +0.0
19,025 - GFF2622 0.61 -1.6
19,025 - GFF2622 0.61 -0.4
19,025 - GFF2622 0.61 -1.6
19,025 - GFF2622 0.61 -3.1
19,025 - GFF2622 0.61 -1.5
19,025 - GFF2622 0.61 +0.0
19,025 - GFF2622 0.61 -0.4
19,028 + GFF2622 0.61 -1.6
19,028 + GFF2622 0.61 +0.2
19,028 + GFF2622 0.61 +0.0
19,028 + GFF2622 0.61 +0.2
19,028 + GFF2622 0.61 -0.4
19,029 - GFF2622 0.61 -0.9
19,029 - GFF2622 0.61 -1.2
19,029 - GFF2622 0.61 -0.6
19,029 - GFF2622 0.61 +0.3
19,030 + GFF2622 0.61 -0.4
19,070 + GFF2622 0.63 -0.5
19,070 + GFF2622 0.63 -0.3
19,070 + GFF2622 0.63 -1.8
19,070 + GFF2622 0.63 -0.3
19,071 - GFF2622 0.64 -0.7
19,071 - GFF2622 0.64 -1.0
19,071 - GFF2622 0.64 -0.7
19,209 - GFF2622 0.72 -1.0
19,220 + GFF2622 0.73 -0.3
19,220 + GFF2622 0.73 -1.2
19,220 + GFF2622 0.73 -1.3
19,220 + GFF2622 0.73 +1.0
19,220 + GFF2622 0.73 -1.0
19,221 - GFF2622 0.73 -2.4
19,221 - GFF2622 0.73 +0.0
19,221 - GFF2622 0.73 -1.2
19,244 + GFF2622 0.74 -0.6
19,244 + GFF2622 0.74 -0.2
19,245 - GFF2622 0.74 -1.7
19,289 + GFF2622 0.77 +0.0
19,290 - GFF2622 0.77 -0.3
19,290 - GFF2622 0.77 -1.0
19,290 - GFF2622 0.77 -1.0
19,292 + GFF2622 0.77 +0.3
19,293 - GFF2622 0.77 -1.0
19,322 + GFF2622 0.79 -1.8
19,322 + GFF2622 0.79 -1.0
19,322 + GFF2622 0.79 -1.6
19,322 + GFF2622 0.79 +0.7
19,322 + GFF2622 0.79 -3.1
19,322 + GFF2622 0.79 -1.1
19,322 + GFF2622 0.79 -0.3
19,323 - GFF2622 0.79 -0.1
19,323 - GFF2622 0.79 -1.0
19,323 - GFF2622 0.79 -2.0
19,323 - GFF2622 0.79 -0.6
19,323 - GFF2622 0.79 -1.3
19,323 - GFF2622 0.79 +0.0
19,323 - GFF2622 0.79 -1.4
19,323 - GFF2622 0.79 -0.8
19,323 - GFF2622 0.79 -1.0
19,323 - GFF2622 0.79 +2.0
19,324 + GFF2622 0.79 -1.4
19,325 - GFF2622 0.79 -0.1
19,344 + GFF2622 0.81 -1.0
19,344 + GFF2622 0.81 -0.3
19,344 + GFF2622 0.81 -2.0
19,436 + GFF2622 0.86 -1.2
19,436 + GFF2622 0.86 -0.9
19,437 - GFF2622 0.87 +1.0
19,437 - GFF2622 0.87 -2.1
19,437 - GFF2622 0.87 -2.8
19,437 - GFF2622 0.87 -1.4
19,462 + GFF2622 0.88 -2.6
19,517 + +0.6
19,517 + -1.0
19,517 + -1.6
19,518 - +0.4
19,518 - -0.7
19,518 - -0.9
19,525 + +0.6
19,526 - +0.0
19,617 - -1.0
19,645 + -1.3
19,649 + -0.6
19,649 + -1.3
19,649 + -1.3
19,649 + -0.8
19,649 + -0.9
19,650 - +0.8
19,650 - -0.8
19,650 - -0.1
19,650 - -0.8
19,650 - -2.0
19,656 + +0.6
19,701 + -0.9
19,712 + -1.1
19,713 - -0.6
19,736 + -1.3
19,736 + -0.5
19,736 + -0.1
19,736 + -0.6
19,737 - +0.0
19,737 - -3.5
19,739 + -0.2
19,803 - GFF2623 0.53 +0.2
19,816 - GFF2623 0.67 -0.2
19,816 - GFF2623 0.67 -1.0
19,816 - GFF2623 0.67 -1.3
19,816 - GFF2623 0.67 -1.0
19,836 + GFF2623 0.88 +0.0
19,845 - -1.0
19,884 + -1.0
19,884 + -1.1
19,885 - -0.9
19,892 + GFF2624 0.10 -0.6
19,892 + GFF2624 0.10 +0.8
19,942 + GFF2624 0.19 -1.0
19,942 + GFF2624 0.19 -0.4
19,943 - GFF2624 0.20 -2.3
19,943 - GFF2624 0.20 -0.3
19,943 - GFF2624 0.20 -1.4
19,943 - GFF2624 0.20 -1.8
20,018 + GFF2624 0.34 -1.8
20,019 - GFF2624 0.34 -2.0
20,019 - GFF2624 0.34 -1.8
20,024 + GFF2624 0.35 -0.6
20,111 + GFF2624 0.51 -1.8
20,112 - GFF2624 0.51 -1.0
20,171 + GFF2624 0.62 -1.4
20,171 + GFF2624 0.62 -1.3
20,171 + GFF2624 0.62 -2.1
20,328 - +0.0
20,375 - -1.8
20,375 - -1.2
20,378 + -1.0
20,378 + +0.3
20,378 + -0.7
20,378 + +0.2
20,379 - -1.8
20,379 - -1.9
20,379 - -1.3
20,379 - -1.3
20,379 - +0.3
20,379 - +0.0
20,387 + +0.4
20,388 - -1.7
20,388 - +0.0
20,388 - -0.3
20,388 - -0.8
20,411 + -1.6
20,411 + -1.3
20,411 + -1.0
20,412 - -1.3
20,412 - -0.1
20,412 - -1.3
20,412 - -1.7
20,412 - -0.2
20,423 - -1.3
20,441 + -1.3
20,441 + -1.4
20,461 + +0.6
20,554 + GFF2625 0.15 -1.0
20,577 - GFF2625 0.17 -0.8
20,597 + GFF2625 0.19 -1.0
20,597 + GFF2625 0.19 -2.4
20,598 - GFF2625 0.19 -0.8
20,598 - GFF2625 0.19 -0.1
20,598 - GFF2625 0.19 -1.0
20,606 + GFF2625 0.20 -1.6
20,606 + GFF2625 0.20 -1.3
20,606 + GFF2625 0.20 -2.2
20,607 - GFF2625 0.20 -0.7
20,607 - GFF2625 0.20 -2.0
20,607 - GFF2625 0.20 -1.6
20,610 + GFF2625 0.21 +0.0
20,611 - GFF2625 0.21 -1.5
20,650 - GFF2625 0.25 -0.6
20,685 - GFF2625 0.29 -0.7
20,686 + GFF2625 0.29 -0.3
20,687 - GFF2625 0.29 -1.3
20,732 - GFF2625 0.34 -1.0
20,732 - GFF2625 0.34 +0.5
20,780 + GFF2625 0.39 -0.3
20,780 + GFF2625 0.39 -0.3
20,781 - GFF2625 0.39 -2.3
20,781 - GFF2625 0.39 -0.2
20,782 + GFF2625 0.39 -0.1
20,783 - GFF2625 0.39 -0.8
20,837 + GFF2625 0.45 -0.4
20,838 - GFF2625 0.45 -0.8
20,838 - GFF2625 0.45 -0.2
20,851 - GFF2625 0.47 +0.0
20,854 + GFF2625 0.47 -0.2
20,854 + GFF2625 0.47 -0.4
20,854 + GFF2625 0.47 -1.5
20,900 + GFF2625 0.52 +0.7
20,900 + GFF2625 0.52 -3.2
20,901 - GFF2625 0.52 -1.0
20,901 - GFF2625 0.52 -1.6
20,956 + GFF2625 0.58 -0.6
20,957 - GFF2625 0.58 -3.3
20,957 - GFF2625 0.58 +0.3
20,961 + GFF2625 0.58 -2.0
20,961 + GFF2625 0.58 -0.1
20,961 + GFF2625 0.58 -1.6
20,962 - GFF2625 0.58 +0.2
20,962 - GFF2625 0.58 -2.4
20,989 + GFF2625 0.61 -2.1
21,099 - GFF2625 0.73 -1.8
21,110 + GFF2625 0.74 +0.3
21,110 + GFF2625 0.74 -0.6
21,110 + GFF2625 0.74 -2.3
21,146 + GFF2625 0.78 -1.2
21,208 + GFF2625 0.85 -0.3
21,209 - GFF2625 0.85 -1.6
21,250 + GFF2625 0.89 +0.0
21,250 + GFF2625 0.89 -1.8
21,291 - -1.1
21,326 + +1.4
21,326 + +0.0
21,326 + -1.8
21,326 + -1.0
21,327 - +0.0
21,327 - -0.6
21,327 - +0.7
21,328 + -0.5
21,328 + -1.0
21,339 - -1.3
21,339 - -0.8
21,339 - -1.8
21,339 - -0.6
21,339 - -1.4

Or see this region's nucleotide sequence