Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2604 and GFF2605 overlap by 1 nucleotides GFF2605 and GFF2606 are separated by 13 nucleotides GFF2606 and GFF2607 are separated by 60 nucleotides GFF2607 and GFF2608 are separated by 10 nucleotides
GFF2604 - Poly(A) polymerase I, at 2,171 to 3,517
GFF2604
GFF2605 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, at 3,517 to 4,011
GFF2605
GFF2606 - Thymidylate kinase, at 4,025 to 4,663
GFF2606
GFF2607 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 4,724 to 5,533
GFF2607
GFF2608 - tRNA threonylcarbamoyladenosine biosynthesis protein TsaB, at 5,544 to 6,245
GFF2608
Position (kb) 4
5 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3.034 kb on + strand, within GFF2604 at 3.034 kb on + strand, within GFF2604 at 3.154 kb on + strand, within GFF2604 at 3.154 kb on + strand, within GFF2604 at 3.154 kb on + strand, within GFF2604 at 3.154 kb on + strand, within GFF2604 at 3.154 kb on + strand, within GFF2604 at 3.154 kb on + strand, within GFF2604 at 3.155 kb on - strand, within GFF2604 at 3.155 kb on - strand, within GFF2604 at 3.223 kb on + strand, within GFF2604 at 3.230 kb on + strand, within GFF2604 at 3.231 kb on - strand, within GFF2604 at 3.231 kb on - strand, within GFF2604 at 3.232 kb on + strand, within GFF2604 at 3.232 kb on + strand, within GFF2604 at 3.232 kb on + strand, within GFF2604 at 3.232 kb on + strand, within GFF2604 at 3.233 kb on - strand, within GFF2604 at 3.233 kb on - strand, within GFF2604 at 3.299 kb on + strand, within GFF2604 at 4.043 kb on + strand at 4.043 kb on + strand at 4.043 kb on + strand at 4.043 kb on + strand at 4.043 kb on + strand at 4.043 kb on + strand at 4.043 kb on + strand at 4.043 kb on + strand at 4.043 kb on + strand at 4.063 kb on + strand at 4.122 kb on + strand, within GFF2606 at 4.122 kb on + strand, within GFF2606 at 4.337 kb on + strand, within GFF2606 at 4.337 kb on + strand, within GFF2606 at 4.337 kb on + strand, within GFF2606 at 4.337 kb on + strand, within GFF2606 at 4.403 kb on + strand, within GFF2606 at 4.453 kb on + strand, within GFF2606 at 4.460 kb on + strand, within GFF2606 at 4.460 kb on + strand, within GFF2606 at 4.460 kb on + strand, within GFF2606 at 4.460 kb on + strand, within GFF2606 at 4.484 kb on + strand, within GFF2606 at 4.484 kb on + strand, within GFF2606 at 4.484 kb on + strand, within GFF2606 at 4.486 kb on + strand, within GFF2606 at 4.486 kb on + strand, within GFF2606 at 4.486 kb on + strand, within GFF2606 at 4.508 kb on + strand, within GFF2606 at 4.508 kb on + strand, within GFF2606 at 4.508 kb on + strand, within GFF2606 at 4.508 kb on + strand, within GFF2606 at 4.529 kb on + strand, within GFF2606 at 4.529 kb on + strand, within GFF2606 at 4.529 kb on + strand, within GFF2606 at 4.529 kb on + strand, within GFF2606 at 4.530 kb on - strand, within GFF2606 at 4.530 kb on - strand, within GFF2606 at 4.530 kb on - strand, within GFF2606 at 4.530 kb on - strand, within GFF2606 at 4.530 kb on - strand, within GFF2606 at 4.530 kb on - strand, within GFF2606 at 4.530 kb on - strand, within GFF2606 at 4.574 kb on - strand, within GFF2606 at 4.579 kb on + strand, within GFF2606 at 4.617 kb on + strand at 4.643 kb on + strand at 4.643 kb on + strand at 4.648 kb on + strand at 4.649 kb on - strand at 4.649 kb on - strand at 4.649 kb on - strand at 4.654 kb on + strand at 4.654 kb on + strand at 4.707 kb on + strand at 5.529 kb on - strand at 5.532 kb on - strand at 5.540 kb on + strand at 5.541 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 3,034 + GFF2604 0.64 -1.6 3,034 + GFF2604 0.64 -1.0 3,154 + GFF2604 0.73 -0.5 3,154 + GFF2604 0.73 -1.3 3,154 + GFF2604 0.73 -1.3 3,154 + GFF2604 0.73 -1.3 3,154 + GFF2604 0.73 -0.6 3,154 + GFF2604 0.73 -0.9 3,155 - GFF2604 0.73 -1.3 3,155 - GFF2604 0.73 -0.8 3,223 + GFF2604 0.78 +0.3 3,230 + GFF2604 0.79 -0.4 3,231 - GFF2604 0.79 -1.3 3,231 - GFF2604 0.79 -1.4 3,232 + GFF2604 0.79 +0.0 3,232 + GFF2604 0.79 +0.0 3,232 + GFF2604 0.79 -0.1 3,232 + GFF2604 0.79 -0.9 3,233 - GFF2604 0.79 +1.4 3,233 - GFF2604 0.79 -1.6 3,299 + GFF2604 0.84 +0.0 4,043 + -0.3 4,043 + +0.6 4,043 + -0.3 4,043 + -2.9 4,043 + -0.3 4,043 + -1.3 4,043 + -2.1 4,043 + -1.1 4,043 + -1.5 4,063 + -0.4 4,122 + GFF2606 0.15 -0.8 4,122 + GFF2606 0.15 -0.2 4,337 + GFF2606 0.49 -0.3 4,337 + GFF2606 0.49 -2.1 4,337 + GFF2606 0.49 -1.3 4,337 + GFF2606 0.49 -1.3 4,403 + GFF2606 0.59 -1.2 4,453 + GFF2606 0.67 -0.2 4,460 + GFF2606 0.68 -1.0 4,460 + GFF2606 0.68 -0.9 4,460 + GFF2606 0.68 -2.3 4,460 + GFF2606 0.68 -1.3 4,484 + GFF2606 0.72 -1.5 4,484 + GFF2606 0.72 -1.7 4,484 + GFF2606 0.72 -1.0 4,486 + GFF2606 0.72 -0.4 4,486 + GFF2606 0.72 -1.6 4,486 + GFF2606 0.72 -1.8 4,508 + GFF2606 0.76 -0.8 4,508 + GFF2606 0.76 -0.2 4,508 + GFF2606 0.76 -2.1 4,508 + GFF2606 0.76 -1.2 4,529 + GFF2606 0.79 -0.2 4,529 + GFF2606 0.79 +0.3 4,529 + GFF2606 0.79 -1.6 4,529 + GFF2606 0.79 -1.2 4,530 - GFF2606 0.79 -0.6 4,530 - GFF2606 0.79 -2.4 4,530 - GFF2606 0.79 -1.0 4,530 - GFF2606 0.79 -1.8 4,530 - GFF2606 0.79 -0.8 4,530 - GFF2606 0.79 -1.2 4,530 - GFF2606 0.79 -2.7 4,574 - GFF2606 0.86 -1.2 4,579 + GFF2606 0.87 -0.7 4,617 + -1.6 4,643 + -0.6 4,643 + -1.3 4,648 + -1.3 4,649 - +0.4 4,649 - +0.8 4,649 - -1.8 4,654 + -1.7 4,654 + -2.7 4,707 + -1.0 5,529 - -2.3 5,532 - +0.0 5,540 + +0.0 5,541 - -1.3
Or see this region's nucleotide sequence