Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2486 and GFF2487 are separated by 315 nucleotides GFF2487 and GFF2488 are separated by 162 nucleotides
GFF2486 - Amino-acid acetyltransferase, at 187,596 to 189,164
GFF2486
GFF2487 - Cyclopropane-fatty-acyl-phospholipid synthase, at 189,480 to 190,652
GFF2487
GFF2488 - hypothetical protein, at 190,815 to 191,660
GFF2488
Position (kb) 189
190
191 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 189.261 kb on - strand at 189.261 kb on - strand at 189.299 kb on + strand at 189.299 kb on + strand at 189.299 kb on + strand at 189.300 kb on - strand at 189.304 kb on - strand at 189.304 kb on - strand at 189.337 kb on + strand at 189.337 kb on + strand at 189.338 kb on - strand at 189.394 kb on + strand at 189.418 kb on + strand at 189.444 kb on + strand at 189.444 kb on + strand at 189.444 kb on + strand at 189.444 kb on + strand at 189.445 kb on - strand at 189.445 kb on - strand at 189.448 kb on - strand at 189.470 kb on + strand at 189.470 kb on + strand at 189.471 kb on - strand at 189.578 kb on - strand at 189.598 kb on + strand, within GFF2487 at 189.598 kb on + strand, within GFF2487 at 189.599 kb on - strand, within GFF2487 at 189.599 kb on - strand, within GFF2487 at 189.599 kb on - strand, within GFF2487 at 189.599 kb on - strand, within GFF2487 at 189.599 kb on - strand, within GFF2487 at 189.599 kb on - strand, within GFF2487 at 189.601 kb on + strand, within GFF2487 at 189.601 kb on + strand, within GFF2487 at 189.602 kb on - strand, within GFF2487 at 189.631 kb on + strand, within GFF2487 at 189.631 kb on + strand, within GFF2487 at 189.631 kb on + strand, within GFF2487 at 189.631 kb on + strand, within GFF2487 at 189.631 kb on + strand, within GFF2487 at 189.632 kb on - strand, within GFF2487 at 189.632 kb on - strand, within GFF2487 at 189.635 kb on + strand, within GFF2487 at 189.636 kb on - strand, within GFF2487 at 189.636 kb on - strand, within GFF2487 at 189.636 kb on - strand, within GFF2487 at 189.636 kb on - strand, within GFF2487 at 189.636 kb on - strand, within GFF2487 at 189.714 kb on - strand, within GFF2487 at 189.794 kb on + strand, within GFF2487 at 189.794 kb on + strand, within GFF2487 at 189.797 kb on - strand, within GFF2487 at 189.834 kb on - strand, within GFF2487 at 189.834 kb on - strand, within GFF2487 at 189.834 kb on - strand, within GFF2487 at 189.843 kb on + strand, within GFF2487 at 189.843 kb on + strand, within GFF2487 at 189.844 kb on - strand, within GFF2487 at 189.844 kb on - strand, within GFF2487 at 189.844 kb on - strand, within GFF2487 at 189.848 kb on + strand, within GFF2487 at 189.848 kb on + strand, within GFF2487 at 189.849 kb on - strand, within GFF2487 at 189.849 kb on - strand, within GFF2487 at 189.849 kb on - strand, within GFF2487 at 189.849 kb on - strand, within GFF2487 at 189.849 kb on - strand, within GFF2487 at 189.849 kb on - strand, within GFF2487 at 189.849 kb on - strand, within GFF2487 at 189.902 kb on - strand, within GFF2487 at 189.911 kb on - strand, within GFF2487 at 190.082 kb on - strand, within GFF2487 at 190.094 kb on + strand, within GFF2487 at 190.094 kb on + strand, within GFF2487 at 190.094 kb on + strand, within GFF2487 at 190.095 kb on - strand, within GFF2487 at 190.095 kb on - strand, within GFF2487 at 190.176 kb on - strand, within GFF2487 at 190.238 kb on - strand, within GFF2487 at 190.288 kb on + strand, within GFF2487 at 190.288 kb on + strand, within GFF2487 at 190.288 kb on + strand, within GFF2487 at 190.288 kb on + strand, within GFF2487 at 190.289 kb on - strand, within GFF2487 at 190.289 kb on - strand, within GFF2487 at 190.289 kb on - strand, within GFF2487 at 190.289 kb on - strand, within GFF2487 at 190.343 kb on + strand, within GFF2487 at 190.344 kb on - strand, within GFF2487 at 190.466 kb on + strand, within GFF2487 at 190.467 kb on - strand, within GFF2487 at 190.528 kb on + strand, within GFF2487 at 190.528 kb on + strand, within GFF2487 at 190.528 kb on + strand, within GFF2487 at 190.529 kb on - strand, within GFF2487 at 190.529 kb on - strand, within GFF2487 at 190.559 kb on + strand at 190.599 kb on - strand at 190.628 kb on - strand at 190.673 kb on + strand at 190.673 kb on + strand at 190.674 kb on - strand at 190.710 kb on + strand at 190.749 kb on + strand at 190.749 kb on + strand at 190.749 kb on + strand at 190.750 kb on - strand at 190.750 kb on - strand at 190.750 kb on - strand at 190.750 kb on - strand at 190.750 kb on - strand at 190.750 kb on - strand at 190.794 kb on - strand at 190.801 kb on + strand at 190.801 kb on + strand at 190.802 kb on - strand at 190.891 kb on + strand at 190.892 kb on - strand at 190.892 kb on - strand at 190.892 kb on - strand at 190.912 kb on + strand, within GFF2488 at 190.925 kb on + strand, within GFF2488 at 190.925 kb on + strand, within GFF2488 at 190.925 kb on + strand, within GFF2488 at 190.925 kb on + strand, within GFF2488 at 190.926 kb on - strand, within GFF2488 at 190.929 kb on - strand, within GFF2488 at 190.929 kb on - strand, within GFF2488 at 190.929 kb on - strand, within GFF2488 at 190.929 kb on - strand, within GFF2488 at 190.929 kb on - strand, within GFF2488 at 190.929 kb on - strand, within GFF2488 at 190.938 kb on + strand, within GFF2488 at 190.938 kb on + strand, within GFF2488 at 190.938 kb on + strand, within GFF2488 at 190.938 kb on + strand, within GFF2488 at 190.938 kb on + strand, within GFF2488 at 190.939 kb on - strand, within GFF2488 at 190.939 kb on - strand, within GFF2488 at 190.939 kb on - strand, within GFF2488 at 191.065 kb on - strand, within GFF2488 at 191.065 kb on - strand, within GFF2488 at 191.088 kb on - strand, within GFF2488 at 191.093 kb on + strand, within GFF2488 at 191.156 kb on + strand, within GFF2488 at 191.156 kb on + strand, within GFF2488 at 191.157 kb on - strand, within GFF2488 at 191.157 kb on - strand, within GFF2488 at 191.302 kb on - strand, within GFF2488 at 191.319 kb on + strand, within GFF2488 at 191.329 kb on + strand, within GFF2488 at 191.330 kb on - strand, within GFF2488 at 191.330 kb on - strand, within GFF2488 at 191.330 kb on - strand, within GFF2488 at 191.406 kb on + strand, within GFF2488 at 191.406 kb on + strand, within GFF2488 at 191.406 kb on + strand, within GFF2488 at 191.406 kb on + strand, within GFF2488 at 191.406 kb on + strand, within GFF2488 at 191.407 kb on - strand, within GFF2488 at 191.416 kb on - strand, within GFF2488 at 191.416 kb on - strand, within GFF2488 at 191.505 kb on + strand, within GFF2488 at 191.510 kb on + strand, within GFF2488 at 191.510 kb on + strand, within GFF2488 at 191.511 kb on - strand, within GFF2488 at 191.511 kb on - strand, within GFF2488 at 191.532 kb on + strand, within GFF2488 at 191.532 kb on + strand, within GFF2488 at 191.532 kb on + strand, within GFF2488 at 191.532 kb on + strand, within GFF2488 at 191.533 kb on - strand, within GFF2488 at 191.533 kb on - strand, within GFF2488 at 191.533 kb on - strand, within GFF2488 at 191.533 kb on - strand, within GFF2488 at 191.539 kb on + strand, within GFF2488 at 191.539 kb on + strand, within GFF2488 at 191.539 kb on + strand, within GFF2488 at 191.540 kb on - strand, within GFF2488 at 191.540 kb on - strand, within GFF2488 at 191.540 kb on - strand, within GFF2488
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 189,261 - -1.0 189,261 - +0.0 189,299 + +0.6 189,299 + -1.3 189,299 + -0.7 189,300 - +1.7 189,304 - -0.5 189,304 - -1.5 189,337 + +0.2 189,337 + -1.0 189,338 - -0.5 189,394 + -0.8 189,418 + -0.4 189,444 + -0.8 189,444 + -0.5 189,444 + -1.7 189,444 + -0.2 189,445 - -0.2 189,445 - -0.7 189,448 - +0.6 189,470 + -0.1 189,470 + +0.4 189,471 - +0.8 189,578 - -1.2 189,598 + GFF2487 0.10 +0.0 189,598 + GFF2487 0.10 -0.5 189,599 - GFF2487 0.10 -1.3 189,599 - GFF2487 0.10 -1.9 189,599 - GFF2487 0.10 -2.5 189,599 - GFF2487 0.10 -2.2 189,599 - GFF2487 0.10 -1.8 189,599 - GFF2487 0.10 -1.1 189,601 + GFF2487 0.10 -1.0 189,601 + GFF2487 0.10 -1.3 189,602 - GFF2487 0.10 -1.4 189,631 + GFF2487 0.13 -1.0 189,631 + GFF2487 0.13 -2.4 189,631 + GFF2487 0.13 -1.8 189,631 + GFF2487 0.13 -3.6 189,631 + GFF2487 0.13 -1.0 189,632 - GFF2487 0.13 -0.3 189,632 - GFF2487 0.13 -0.1 189,635 + GFF2487 0.13 -2.0 189,636 - GFF2487 0.13 -2.0 189,636 - GFF2487 0.13 -1.5 189,636 - GFF2487 0.13 -2.7 189,636 - GFF2487 0.13 -0.3 189,636 - GFF2487 0.13 -1.4 189,714 - GFF2487 0.20 -0.3 189,794 + GFF2487 0.27 -2.0 189,794 + GFF2487 0.27 -1.5 189,797 - GFF2487 0.27 -1.4 189,834 - GFF2487 0.30 -1.4 189,834 - GFF2487 0.30 -1.0 189,834 - GFF2487 0.30 -2.3 189,843 + GFF2487 0.31 -0.8 189,843 + GFF2487 0.31 -0.7 189,844 - GFF2487 0.31 -2.3 189,844 - GFF2487 0.31 -1.8 189,844 - GFF2487 0.31 -0.6 189,848 + GFF2487 0.31 -0.8 189,848 + GFF2487 0.31 -2.0 189,849 - GFF2487 0.31 +1.0 189,849 - GFF2487 0.31 -1.4 189,849 - GFF2487 0.31 -1.3 189,849 - GFF2487 0.31 -1.9 189,849 - GFF2487 0.31 -2.4 189,849 - GFF2487 0.31 -2.1 189,849 - GFF2487 0.31 -2.7 189,902 - GFF2487 0.36 -1.5 189,911 - GFF2487 0.37 -0.5 190,082 - GFF2487 0.51 -0.3 190,094 + GFF2487 0.52 -0.5 190,094 + GFF2487 0.52 -1.1 190,094 + GFF2487 0.52 -1.2 190,095 - GFF2487 0.52 -0.5 190,095 - GFF2487 0.52 +0.0 190,176 - GFF2487 0.59 -1.9 190,238 - GFF2487 0.65 -1.9 190,288 + GFF2487 0.69 -1.7 190,288 + GFF2487 0.69 -1.0 190,288 + GFF2487 0.69 -0.3 190,288 + GFF2487 0.69 -1.3 190,289 - GFF2487 0.69 -0.1 190,289 - GFF2487 0.69 -1.7 190,289 - GFF2487 0.69 +0.3 190,289 - GFF2487 0.69 -0.2 190,343 + GFF2487 0.74 -1.6 190,344 - GFF2487 0.74 -0.3 190,466 + GFF2487 0.84 -2.1 190,467 - GFF2487 0.84 -1.5 190,528 + GFF2487 0.89 +0.6 190,528 + GFF2487 0.89 -0.8 190,528 + GFF2487 0.89 -2.4 190,529 - GFF2487 0.89 -1.2 190,529 - GFF2487 0.89 -1.3 190,559 + -2.9 190,599 - -1.5 190,628 - -1.3 190,673 + -0.7 190,673 + -0.3 190,674 - -1.4 190,710 + -2.9 190,749 + -0.5 190,749 + -1.3 190,749 + -1.8 190,750 - +0.0 190,750 - -1.8 190,750 - -1.8 190,750 - -1.3 190,750 - -1.5 190,750 - +0.5 190,794 - -0.5 190,801 + -1.5 190,801 + -1.3 190,802 - +0.5 190,891 + -0.6 190,892 - -0.6 190,892 - -0.4 190,892 - +1.3 190,912 + GFF2488 0.11 -1.5 190,925 + GFF2488 0.13 +0.3 190,925 + GFF2488 0.13 -1.0 190,925 + GFF2488 0.13 -0.5 190,925 + GFF2488 0.13 +0.0 190,926 - GFF2488 0.13 -1.4 190,929 - GFF2488 0.13 -1.5 190,929 - GFF2488 0.13 +0.0 190,929 - GFF2488 0.13 +0.0 190,929 - GFF2488 0.13 +0.6 190,929 - GFF2488 0.13 -0.8 190,929 - GFF2488 0.13 -1.3 190,938 + GFF2488 0.15 -0.5 190,938 + GFF2488 0.15 +0.2 190,938 + GFF2488 0.15 +0.0 190,938 + GFF2488 0.15 -1.3 190,938 + GFF2488 0.15 -0.5 190,939 - GFF2488 0.15 +0.3 190,939 - GFF2488 0.15 -0.7 190,939 - GFF2488 0.15 +0.5 191,065 - GFF2488 0.30 -1.3 191,065 - GFF2488 0.30 +0.8 191,088 - GFF2488 0.32 -0.7 191,093 + GFF2488 0.33 +1.0 191,156 + GFF2488 0.40 -1.3 191,156 + GFF2488 0.40 -0.3 191,157 - GFF2488 0.40 -0.5 191,157 - GFF2488 0.40 -1.6 191,302 - GFF2488 0.58 +0.0 191,319 + GFF2488 0.60 -0.8 191,329 + GFF2488 0.61 -0.7 191,330 - GFF2488 0.61 -0.7 191,330 - GFF2488 0.61 -0.1 191,330 - GFF2488 0.61 -1.5 191,406 + GFF2488 0.70 -0.1 191,406 + GFF2488 0.70 -0.2 191,406 + GFF2488 0.70 -1.0 191,406 + GFF2488 0.70 +0.0 191,406 + GFF2488 0.70 -0.7 191,407 - GFF2488 0.70 -0.1 191,416 - GFF2488 0.71 +0.6 191,416 - GFF2488 0.71 -0.3 191,505 + GFF2488 0.82 -0.2 191,510 + GFF2488 0.82 -0.1 191,510 + GFF2488 0.82 +0.0 191,511 - GFF2488 0.82 -0.4 191,511 - GFF2488 0.82 -0.1 191,532 + GFF2488 0.85 +1.3 191,532 + GFF2488 0.85 -0.5 191,532 + GFF2488 0.85 -0.9 191,532 + GFF2488 0.85 +0.5 191,533 - GFF2488 0.85 -1.0 191,533 - GFF2488 0.85 -1.0 191,533 - GFF2488 0.85 +1.4 191,533 - GFF2488 0.85 -1.0 191,539 + GFF2488 0.86 -2.7 191,539 + GFF2488 0.86 -1.0 191,539 + GFF2488 0.86 -0.3 191,540 - GFF2488 0.86 -0.3 191,540 - GFF2488 0.86 -1.4 191,540 - GFF2488 0.86 -0.8
Or see this region's nucleotide sequence