Strain Fitness in Methylophilus sp. DMC18 around GFF2435

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2434 and GFF2435 overlap by 4 nucleotidesGFF2435 and GFF2436 overlap by 1 nucleotides GFF2434 - Molybdopterin molybdenumtransferase, at 134,790 to 136,058 GFF2434 GFF2435 - Molybdenum cofactor guanylyltransferase, at 136,055 to 136,633 GFF2435 GFF2436 - GTP 3',8-cyclase, at 136,633 to 137,643 GFF2436 Position (kb) 136 137Strain fitness (log2 ratio) -2 -1 0 1at 135.092 kb on + strand, within GFF2434at 135.092 kb on + strand, within GFF2434at 135.092 kb on + strand, within GFF2434at 135.093 kb on - strand, within GFF2434at 135.301 kb on - strand, within GFF2434at 135.301 kb on - strand, within GFF2434at 135.389 kb on + strand, within GFF2434at 135.389 kb on + strand, within GFF2434at 135.389 kb on + strand, within GFF2434at 135.389 kb on + strand, within GFF2434at 135.390 kb on - strand, within GFF2434at 135.390 kb on - strand, within GFF2434at 135.390 kb on - strand, within GFF2434at 135.392 kb on - strand, within GFF2434at 135.392 kb on - strand, within GFF2434at 135.477 kb on - strand, within GFF2434at 135.477 kb on - strand, within GFF2434at 135.477 kb on - strand, within GFF2434at 135.558 kb on - strand, within GFF2434at 135.558 kb on - strand, within GFF2434at 135.598 kb on - strand, within GFF2434at 135.606 kb on - strand, within GFF2434at 135.785 kb on + strand, within GFF2434at 135.866 kb on + strand, within GFF2434at 135.875 kb on + strand, within GFF2434at 135.959 kb on - strandat 135.959 kb on - strandat 135.997 kb on + strandat 135.997 kb on + strandat 135.998 kb on - strandat 135.998 kb on - strandat 135.998 kb on - strandat 135.998 kb on - strandat 136.036 kb on - strandat 136.038 kb on + strandat 136.038 kb on + strandat 136.038 kb on + strandat 136.039 kb on - strandat 136.121 kb on + strand, within GFF2435at 136.121 kb on + strand, within GFF2435at 136.121 kb on + strand, within GFF2435at 136.122 kb on - strand, within GFF2435at 136.464 kb on + strand, within GFF2435at 136.465 kb on - strand, within GFF2435at 136.625 kb on - strandat 136.625 kb on - strandat 136.654 kb on - strandat 136.738 kb on + strand, within GFF2436at 136.739 kb on - strand, within GFF2436at 136.739 kb on - strand, within GFF2436at 136.739 kb on - strand, within GFF2436at 136.813 kb on + strand, within GFF2436at 136.814 kb on - strand, within GFF2436at 136.814 kb on - strand, within GFF2436at 136.819 kb on + strand, within GFF2436at 136.819 kb on + strand, within GFF2436at 136.836 kb on + strand, within GFF2436at 136.876 kb on - strand, within GFF2436at 136.887 kb on + strand, within GFF2436at 136.887 kb on + strand, within GFF2436at 136.887 kb on + strand, within GFF2436at 136.888 kb on - strand, within GFF2436at 136.888 kb on - strand, within GFF2436at 136.888 kb on - strand, within GFF2436at 136.925 kb on + strand, within GFF2436at 136.953 kb on + strand, within GFF2436at 136.954 kb on - strand, within GFF2436at 136.954 kb on - strand, within GFF2436at 136.954 kb on - strand, within GFF2436at 136.975 kb on - strand, within GFF2436at 136.981 kb on - strand, within GFF2436at 136.981 kb on - strand, within GFF2436at 136.981 kb on - strand, within GFF2436at 137.061 kb on + strand, within GFF2436at 137.070 kb on + strand, within GFF2436at 137.070 kb on + strand, within GFF2436at 137.071 kb on - strand, within GFF2436at 137.071 kb on - strand, within GFF2436at 137.074 kb on + strand, within GFF2436at 137.074 kb on + strand, within GFF2436at 137.075 kb on - strand, within GFF2436at 137.075 kb on - strand, within GFF2436at 137.075 kb on - strand, within GFF2436at 137.075 kb on - strand, within GFF2436at 137.075 kb on - strand, within GFF2436at 137.075 kb on - strand, within GFF2436at 137.156 kb on - strand, within GFF2436at 137.156 kb on - strand, within GFF2436at 137.209 kb on + strand, within GFF2436at 137.209 kb on + strand, within GFF2436at 137.269 kb on - strand, within GFF2436at 137.269 kb on - strand, within GFF2436at 137.269 kb on - strand, within GFF2436at 137.309 kb on + strand, within GFF2436at 137.310 kb on - strand, within GFF2436at 137.310 kb on - strand, within GFF2436at 137.314 kb on - strand, within GFF2436at 137.314 kb on - strand, within GFF2436at 137.338 kb on - strand, within GFF2436at 137.449 kb on - strand, within GFF2436at 137.510 kb on - strand, within GFF2436at 137.538 kb on - strand, within GFF2436at 137.578 kb on + strandat 137.578 kb on + strandat 137.578 kb on + strandat 137.578 kb on + strandat 137.578 kb on + strandat 137.578 kb on + strandat 137.578 kb on + strandat 137.578 kb on + strandat 137.578 kb on + strandat 137.579 kb on - strandat 137.579 kb on - strandat 137.579 kb on - strandat 137.579 kb on - strandat 137.579 kb on - strandat 137.579 kb on - strandat 137.579 kb on - strandat 137.579 kb on - strandat 137.579 kb on - strandat 137.579 kb on - strandat 137.582 kb on + strandat 137.582 kb on + strandat 137.582 kb on + strandat 137.582 kb on + strandat 137.582 kb on + strandat 137.583 kb on - strandat 137.583 kb on - strandat 137.583 kb on - strandat 137.583 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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135,092 + GFF2434 0.24 -1.0
135,092 + GFF2434 0.24 +0.3
135,092 + GFF2434 0.24 -1.0
135,093 - GFF2434 0.24 -0.2
135,301 - GFF2434 0.40 -0.5
135,301 - GFF2434 0.40 -0.3
135,389 + GFF2434 0.47 -1.8
135,389 + GFF2434 0.47 -2.4
135,389 + GFF2434 0.47 -1.3
135,389 + GFF2434 0.47 -0.3
135,390 - GFF2434 0.47 -0.1
135,390 - GFF2434 0.47 +0.2
135,390 - GFF2434 0.47 -1.5
135,392 - GFF2434 0.47 +0.4
135,392 - GFF2434 0.47 -0.3
135,477 - GFF2434 0.54 -2.0
135,477 - GFF2434 0.54 +0.0
135,477 - GFF2434 0.54 -0.5
135,558 - GFF2434 0.61 +0.0
135,558 - GFF2434 0.61 -1.0
135,598 - GFF2434 0.64 -1.0
135,606 - GFF2434 0.64 +0.2
135,785 + GFF2434 0.78 -1.6
135,866 + GFF2434 0.85 +0.2
135,875 + GFF2434 0.86 +0.0
135,959 - -0.3
135,959 - -0.8
135,997 + +0.0
135,997 + +0.0
135,998 - +0.0
135,998 - +0.5
135,998 - -0.2
135,998 - -0.3
136,036 - -1.0
136,038 + -1.4
136,038 + -0.3
136,038 + -1.3
136,039 - -0.2
136,121 + GFF2435 0.11 -0.1
136,121 + GFF2435 0.11 +0.0
136,121 + GFF2435 0.11 -0.5
136,122 - GFF2435 0.12 -0.8
136,464 + GFF2435 0.71 -2.3
136,465 - GFF2435 0.71 -1.4
136,625 - -1.0
136,625 - -1.5
136,654 - -0.8
136,738 + GFF2436 0.10 -1.0
136,739 - GFF2436 0.10 -1.3
136,739 - GFF2436 0.10 -0.1
136,739 - GFF2436 0.10 -1.9
136,813 + GFF2436 0.18 -0.8
136,814 - GFF2436 0.18 -0.5
136,814 - GFF2436 0.18 -1.1
136,819 + GFF2436 0.18 -1.8
136,819 + GFF2436 0.18 -1.2
136,836 + GFF2436 0.20 -1.0
136,876 - GFF2436 0.24 -1.3
136,887 + GFF2436 0.25 -1.8
136,887 + GFF2436 0.25 -0.9
136,887 + GFF2436 0.25 -0.3
136,888 - GFF2436 0.25 -1.5
136,888 - GFF2436 0.25 -1.3
136,888 - GFF2436 0.25 +0.7
136,925 + GFF2436 0.29 -0.3
136,953 + GFF2436 0.32 +0.7
136,954 - GFF2436 0.32 +1.0
136,954 - GFF2436 0.32 +0.0
136,954 - GFF2436 0.32 -0.7
136,975 - GFF2436 0.34 -1.3
136,981 - GFF2436 0.34 -0.6
136,981 - GFF2436 0.34 -1.5
136,981 - GFF2436 0.34 -0.9
137,061 + GFF2436 0.42 -1.5
137,070 + GFF2436 0.43 +0.3
137,070 + GFF2436 0.43 +0.7
137,071 - GFF2436 0.43 -2.0
137,071 - GFF2436 0.43 -0.8
137,074 + GFF2436 0.44 -1.8
137,074 + GFF2436 0.44 +0.0
137,075 - GFF2436 0.44 -1.0
137,075 - GFF2436 0.44 -1.1
137,075 - GFF2436 0.44 +0.0
137,075 - GFF2436 0.44 +0.6
137,075 - GFF2436 0.44 -1.3
137,075 - GFF2436 0.44 -0.8
137,156 - GFF2436 0.52 -1.5
137,156 - GFF2436 0.52 -2.0
137,209 + GFF2436 0.57 -0.9
137,209 + GFF2436 0.57 -1.4
137,269 - GFF2436 0.63 -0.9
137,269 - GFF2436 0.63 -0.4
137,269 - GFF2436 0.63 -1.5
137,309 + GFF2436 0.67 -1.0
137,310 - GFF2436 0.67 -1.5
137,310 - GFF2436 0.67 -0.9
137,314 - GFF2436 0.67 -0.9
137,314 - GFF2436 0.67 -1.0
137,338 - GFF2436 0.70 -1.3
137,449 - GFF2436 0.81 -2.7
137,510 - GFF2436 0.87 -1.3
137,538 - GFF2436 0.90 -0.0
137,578 + +1.0
137,578 + +0.0
137,578 + -1.4
137,578 + -2.0
137,578 + +0.0
137,578 + +0.6
137,578 + -0.9
137,578 + -2.0
137,578 + -0.8
137,579 - +0.0
137,579 - -1.3
137,579 - +0.0
137,579 - -0.8
137,579 - -2.4
137,579 - -1.3
137,579 - -1.3
137,579 - -1.9
137,579 - -0.5
137,579 - -1.0
137,582 + -1.0
137,582 + -1.0
137,582 + -0.4
137,582 + +0.2
137,582 + +0.6
137,583 - -1.0
137,583 - -1.8
137,583 - +0.3
137,583 - -1.0

Or see this region's nucleotide sequence