Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2335 and GFF2336 are separated by 2 nucleotides GFF2336 and GFF2337 are separated by 81 nucleotides GFF2337 and GFF2338 are separated by 22 nucleotides GFF2338 and GFF2339 are separated by 15 nucleotides
GFF2335 - 7-carboxy-7-deazaguanine synthase, at 48,443 to 49,084
GFF2335
GFF2336 - 7-cyano-7-deazaguanine synthase, at 49,087 to 49,785
GFF2336
GFF2337 - hypothetical protein, at 49,867 to 50,289
GFF2337
GFF2338 - Ribosome maturation factor RimM, at 50,312 to 50,863
GFF2338
GFF2339 - tRNA (guanine-N(1)-)-methyltransferase, at 50,879 to 51,631
GFF2339
Position (kb) 49
50
51 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 49.082 kb on + strand at 49.082 kb on + strand at 49.082 kb on + strand at 49.082 kb on + strand at 49.082 kb on + strand at 49.082 kb on + strand at 49.082 kb on + strand at 49.082 kb on + strand at 49.083 kb on - strand at 49.083 kb on - strand at 49.105 kb on - strand at 49.118 kb on + strand at 49.143 kb on + strand at 49.144 kb on - strand at 49.144 kb on - strand at 49.144 kb on - strand at 49.174 kb on + strand, within GFF2336 at 49.174 kb on + strand, within GFF2336 at 49.174 kb on + strand, within GFF2336 at 49.175 kb on - strand, within GFF2336 at 49.175 kb on - strand, within GFF2336 at 49.184 kb on - strand, within GFF2336 at 49.216 kb on - strand, within GFF2336 at 49.216 kb on - strand, within GFF2336 at 49.372 kb on + strand, within GFF2336 at 49.372 kb on + strand, within GFF2336 at 49.373 kb on - strand, within GFF2336 at 49.373 kb on - strand, within GFF2336 at 49.373 kb on - strand, within GFF2336 at 49.373 kb on - strand, within GFF2336 at 49.389 kb on + strand, within GFF2336 at 49.390 kb on - strand, within GFF2336 at 49.390 kb on - strand, within GFF2336 at 49.390 kb on - strand, within GFF2336 at 49.395 kb on + strand, within GFF2336 at 49.395 kb on + strand, within GFF2336 at 49.395 kb on + strand, within GFF2336 at 49.395 kb on + strand, within GFF2336 at 49.395 kb on + strand, within GFF2336 at 49.396 kb on - strand, within GFF2336 at 49.396 kb on - strand, within GFF2336 at 49.430 kb on + strand, within GFF2336 at 49.430 kb on + strand, within GFF2336 at 49.501 kb on + strand, within GFF2336 at 49.501 kb on + strand, within GFF2336 at 49.501 kb on + strand, within GFF2336 at 49.501 kb on + strand, within GFF2336 at 49.501 kb on + strand, within GFF2336 at 49.501 kb on + strand, within GFF2336 at 49.502 kb on - strand, within GFF2336 at 49.539 kb on + strand, within GFF2336 at 49.539 kb on + strand, within GFF2336 at 49.550 kb on + strand, within GFF2336 at 49.640 kb on - strand, within GFF2336 at 49.646 kb on + strand, within GFF2336 at 49.646 kb on + strand, within GFF2336 at 49.661 kb on - strand, within GFF2336 at 49.729 kb on - strand at 49.729 kb on - strand at 49.729 kb on - strand at 49.730 kb on + strand at 49.730 kb on + strand at 49.730 kb on + strand at 49.730 kb on + strand at 49.731 kb on - strand at 49.731 kb on - strand at 49.759 kb on + strand at 49.759 kb on + strand at 49.759 kb on + strand at 49.760 kb on - strand at 50.103 kb on + strand, within GFF2337 at 50.130 kb on + strand, within GFF2337 at 50.861 kb on + strand at 50.947 kb on + strand at 50.972 kb on + strand, within GFF2339 at 51.004 kb on + strand, within GFF2339 at 51.004 kb on + strand, within GFF2339 at 51.114 kb on + strand, within GFF2339 at 51.114 kb on + strand, within GFF2339
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 49,082 + -2.2 49,082 + +0.8 49,082 + -1.4 49,082 + -0.5 49,082 + -2.2 49,082 + -0.7 49,082 + -0.3 49,082 + -2.8 49,083 - -1.1 49,083 - +0.0 49,105 - +0.0 49,118 + -1.0 49,143 + +0.0 49,144 - +0.7 49,144 - -1.4 49,144 - +0.7 49,174 + GFF2336 0.12 -0.4 49,174 + GFF2336 0.12 +0.0 49,174 + GFF2336 0.12 +0.4 49,175 - GFF2336 0.13 +0.0 49,175 - GFF2336 0.13 -0.5 49,184 - GFF2336 0.14 -0.7 49,216 - GFF2336 0.18 +0.7 49,216 - GFF2336 0.18 +0.6 49,372 + GFF2336 0.41 +0.0 49,372 + GFF2336 0.41 -2.0 49,373 - GFF2336 0.41 -0.8 49,373 - GFF2336 0.41 -1.3 49,373 - GFF2336 0.41 -1.3 49,373 - GFF2336 0.41 -0.5 49,389 + GFF2336 0.43 -1.8 49,390 - GFF2336 0.43 -1.0 49,390 - GFF2336 0.43 +0.0 49,390 - GFF2336 0.43 +0.5 49,395 + GFF2336 0.44 -1.7 49,395 + GFF2336 0.44 -0.4 49,395 + GFF2336 0.44 -1.0 49,395 + GFF2336 0.44 -0.1 49,395 + GFF2336 0.44 +0.0 49,396 - GFF2336 0.44 +0.8 49,396 - GFF2336 0.44 +0.5 49,430 + GFF2336 0.49 -1.4 49,430 + GFF2336 0.49 -1.5 49,501 + GFF2336 0.59 -1.1 49,501 + GFF2336 0.59 -1.3 49,501 + GFF2336 0.59 +0.5 49,501 + GFF2336 0.59 -1.6 49,501 + GFF2336 0.59 -0.7 49,501 + GFF2336 0.59 +1.0 49,502 - GFF2336 0.59 -1.0 49,539 + GFF2336 0.65 -1.3 49,539 + GFF2336 0.65 -0.1 49,550 + GFF2336 0.66 -0.8 49,640 - GFF2336 0.79 -0.4 49,646 + GFF2336 0.80 +0.2 49,646 + GFF2336 0.80 -0.2 49,661 - GFF2336 0.82 -0.5 49,729 - +0.3 49,729 - +0.4 49,729 - +0.0 49,730 + +0.0 49,730 + -0.5 49,730 + -2.1 49,730 + -1.5 49,731 - +1.4 49,731 - -1.0 49,759 + -1.5 49,759 + +0.3 49,759 + -0.7 49,760 - -0.1 50,103 + GFF2337 0.56 -1.8 50,130 + GFF2337 0.62 -1.4 50,861 + -0.9 50,947 + -1.0 50,972 + GFF2339 0.12 -1.0 51,004 + GFF2339 0.17 -0.9 51,004 + GFF2339 0.17 -1.0 51,114 + GFF2339 0.31 -0.5 51,114 + GFF2339 0.31 -0.5
Or see this region's nucleotide sequence