Strain Fitness in Methylophilus sp. DMC18 around GFF2324

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2323 and GFF2324 are separated by 181 nucleotidesGFF2324 and GFF2325 are separated by 59 nucleotidesGFF2325 and GFF2326 overlap by 4 nucleotides GFF2323 - putative cystine transporter YijE, at 38,969 to 39,889 GFF2323 GFF2324 - Transcriptional regulatory protein PmpR, at 40,071 to 40,799 GFF2324 GFF2325 - Crossover junction endodeoxyribonuclease RuvC, at 40,859 to 41,419 GFF2325 GFF2326 - Holliday junction ATP-dependent DNA helicase RuvA, at 41,416 to 41,991 GFF2326 Position (kb) 40 41Strain fitness (log2 ratio) -2 -1 0 1at 39.140 kb on + strand, within GFF2323at 39.140 kb on + strand, within GFF2323at 39.140 kb on + strand, within GFF2323at 39.140 kb on + strand, within GFF2323at 39.279 kb on - strand, within GFF2323at 39.279 kb on - strand, within GFF2323at 39.279 kb on - strand, within GFF2323at 39.280 kb on + strand, within GFF2323at 39.280 kb on + strand, within GFF2323at 39.473 kb on - strand, within GFF2323at 39.473 kb on - strand, within GFF2323at 39.536 kb on - strand, within GFF2323at 39.632 kb on - strand, within GFF2323at 39.642 kb on + strand, within GFF2323at 39.642 kb on + strand, within GFF2323at 39.642 kb on + strand, within GFF2323at 39.643 kb on - strand, within GFF2323at 39.710 kb on - strand, within GFF2323at 39.756 kb on + strand, within GFF2323at 39.855 kb on - strandat 39.863 kb on - strandat 39.938 kb on + strandat 39.938 kb on + strandat 39.938 kb on + strandat 39.939 kb on - strandat 39.956 kb on + strandat 39.957 kb on - strandat 39.957 kb on - strandat 39.969 kb on + strandat 39.970 kb on - strandat 39.970 kb on - strandat 39.970 kb on - strandat 39.970 kb on - strandat 40.070 kb on + strandat 40.082 kb on + strandat 40.083 kb on - strandat 40.083 kb on - strandat 40.085 kb on + strandat 40.085 kb on + strandat 40.196 kb on + strand, within GFF2324at 40.196 kb on + strand, within GFF2324at 40.250 kb on + strand, within GFF2324at 40.265 kb on + strand, within GFF2324at 40.310 kb on + strand, within GFF2324at 40.466 kb on + strand, within GFF2324at 40.466 kb on + strand, within GFF2324at 40.582 kb on + strand, within GFF2324at 40.582 kb on + strand, within GFF2324at 40.582 kb on + strand, within GFF2324at 40.582 kb on + strand, within GFF2324at 40.582 kb on + strand, within GFF2324at 40.582 kb on + strand, within GFF2324at 40.770 kb on + strandat 40.797 kb on + strandat 40.797 kb on + strandat 40.798 kb on - strandat 40.798 kb on - strandat 40.864 kb on + strandat 40.884 kb on + strandat 40.920 kb on + strand, within GFF2325at 40.920 kb on + strand, within GFF2325at 40.920 kb on + strand, within GFF2325at 40.946 kb on + strand, within GFF2325at 40.946 kb on + strand, within GFF2325at 40.947 kb on - strand, within GFF2325at 41.072 kb on + strand, within GFF2325at 41.073 kb on - strand, within GFF2325at 41.111 kb on - strand, within GFF2325at 41.202 kb on - strand, within GFF2325at 41.287 kb on + strand, within GFF2325at 41.287 kb on + strand, within GFF2325at 41.367 kb on + strandat 41.367 kb on + strandat 41.398 kb on + strandat 41.398 kb on + strandat 41.398 kb on + strandat 41.399 kb on - strandat 41.415 kb on + strandat 41.415 kb on + strandat 41.416 kb on - strandat 41.492 kb on - strand, within GFF2326at 41.492 kb on - strand, within GFF2326at 41.498 kb on + strand, within GFF2326at 41.565 kb on + strand, within GFF2326at 41.565 kb on + strand, within GFF2326at 41.566 kb on - strand, within GFF2326at 41.566 kb on - strand, within GFF2326at 41.596 kb on + strand, within GFF2326at 41.596 kb on + strand, within GFF2326at 41.596 kb on + strand, within GFF2326at 41.752 kb on - strand, within GFF2326

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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39,140 + GFF2323 0.19 -1.3
39,140 + GFF2323 0.19 -1.3
39,140 + GFF2323 0.19 -1.3
39,140 + GFF2323 0.19 -0.8
39,279 - GFF2323 0.34 -0.8
39,279 - GFF2323 0.34 -1.5
39,279 - GFF2323 0.34 -1.3
39,280 + GFF2323 0.34 +0.0
39,280 + GFF2323 0.34 -1.5
39,473 - GFF2323 0.55 -1.0
39,473 - GFF2323 0.55 +0.0
39,536 - GFF2323 0.62 -1.0
39,632 - GFF2323 0.72 -1.0
39,642 + GFF2323 0.73 +0.2
39,642 + GFF2323 0.73 -1.0
39,642 + GFF2323 0.73 -1.0
39,643 - GFF2323 0.73 -2.0
39,710 - GFF2323 0.80 +0.5
39,756 + GFF2323 0.85 -1.0
39,855 - +0.1
39,863 - -1.3
39,938 + +0.6
39,938 + -1.6
39,938 + +0.0
39,939 - -0.1
39,956 + -0.5
39,957 - -0.3
39,957 - -2.1
39,969 + -0.2
39,970 - +0.7
39,970 - -0.4
39,970 - -0.0
39,970 - -1.7
40,070 + -1.0
40,082 + -1.0
40,083 - -1.0
40,083 - -1.0
40,085 + -0.2
40,085 + -0.3
40,196 + GFF2324 0.17 -0.3
40,196 + GFF2324 0.17 -1.3
40,250 + GFF2324 0.25 -1.0
40,265 + GFF2324 0.27 -0.7
40,310 + GFF2324 0.33 -1.5
40,466 + GFF2324 0.54 -0.5
40,466 + GFF2324 0.54 -1.0
40,582 + GFF2324 0.70 -1.0
40,582 + GFF2324 0.70 -0.5
40,582 + GFF2324 0.70 -0.3
40,582 + GFF2324 0.70 -1.3
40,582 + GFF2324 0.70 -2.0
40,582 + GFF2324 0.70 -1.0
40,770 + -1.8
40,797 + -2.1
40,797 + -2.5
40,798 - -0.4
40,798 - -0.5
40,864 + +0.0
40,884 + +0.6
40,920 + GFF2325 0.11 -2.0
40,920 + GFF2325 0.11 -2.0
40,920 + GFF2325 0.11 -1.0
40,946 + GFF2325 0.16 -0.8
40,946 + GFF2325 0.16 -0.8
40,947 - GFF2325 0.16 +0.6
41,072 + GFF2325 0.38 -1.0
41,073 - GFF2325 0.38 -1.0
41,111 - GFF2325 0.45 -1.0
41,202 - GFF2325 0.61 -0.7
41,287 + GFF2325 0.76 -0.3
41,287 + GFF2325 0.76 -1.2
41,367 + -0.4
41,367 + +0.1
41,398 + -1.3
41,398 + -0.4
41,398 + -0.2
41,399 - +0.0
41,415 + -1.3
41,415 + +0.0
41,416 - -1.0
41,492 - GFF2326 0.13 -2.3
41,492 - GFF2326 0.13 -1.0
41,498 + GFF2326 0.14 -1.0
41,565 + GFF2326 0.26 -1.0
41,565 + GFF2326 0.26 -1.5
41,566 - GFF2326 0.26 -2.3
41,566 - GFF2326 0.26 -1.0
41,596 + GFF2326 0.31 -0.5
41,596 + GFF2326 0.31 -1.5
41,596 + GFF2326 0.31 -0.5
41,752 - GFF2326 0.58 -2.4

Or see this region's nucleotide sequence