Strain Fitness in Methylophilus sp. DMC18 around GFF2322

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2320 and GFF2321 are separated by 100 nucleotidesGFF2321 and GFF2322 are separated by 28 nucleotidesGFF2322 and GFF2323 are separated by 16 nucleotides GFF2320 - Inosine-5'-monophosphate dehydrogenase, at 37,496 to 37,927 GFF2320 GFF2321 - hypothetical protein, at 38,028 to 38,549 GFF2321 GFF2322 - hypothetical protein, at 38,578 to 38,952 GFF2322 GFF2323 - putative cystine transporter YijE, at 38,969 to 39,889 GFF2323 Position (kb) 38 39Strain fitness (log2 ratio) -2 -1 0 1 2at 37.586 kb on + strand, within GFF2320at 37.586 kb on + strand, within GFF2320at 37.586 kb on + strand, within GFF2320at 37.586 kb on + strand, within GFF2320at 37.624 kb on + strand, within GFF2320at 37.744 kb on + strand, within GFF2320at 37.759 kb on - strand, within GFF2320at 37.759 kb on - strand, within GFF2320at 37.781 kb on + strand, within GFF2320at 37.782 kb on - strand, within GFF2320at 37.873 kb on + strand, within GFF2320at 37.874 kb on - strand, within GFF2320at 37.877 kb on - strand, within GFF2320at 37.877 kb on - strand, within GFF2320at 37.877 kb on - strand, within GFF2320at 37.877 kb on - strand, within GFF2320at 37.877 kb on - strand, within GFF2320at 37.897 kb on + strandat 37.908 kb on - strandat 37.958 kb on + strandat 37.962 kb on + strandat 37.962 kb on + strandat 37.963 kb on - strandat 37.963 kb on - strandat 37.963 kb on - strandat 37.964 kb on + strandat 37.964 kb on + strandat 37.965 kb on - strandat 37.965 kb on - strandat 37.965 kb on - strandat 37.965 kb on - strandat 37.985 kb on - strandat 38.001 kb on - strandat 38.024 kb on + strandat 38.025 kb on - strandat 38.039 kb on + strandat 38.044 kb on + strandat 38.051 kb on + strandat 38.189 kb on + strand, within GFF2321at 38.189 kb on + strand, within GFF2321at 38.258 kb on + strand, within GFF2321at 38.258 kb on + strand, within GFF2321at 38.258 kb on + strand, within GFF2321at 38.258 kb on + strand, within GFF2321at 38.258 kb on + strand, within GFF2321at 38.351 kb on + strand, within GFF2321at 38.351 kb on + strand, within GFF2321at 38.351 kb on + strand, within GFF2321at 38.351 kb on + strand, within GFF2321at 38.351 kb on + strand, within GFF2321at 38.351 kb on + strand, within GFF2321at 38.351 kb on + strand, within GFF2321at 38.351 kb on + strand, within GFF2321at 38.436 kb on + strand, within GFF2321at 38.436 kb on + strand, within GFF2321at 38.439 kb on + strand, within GFF2321at 38.439 kb on + strand, within GFF2321at 38.439 kb on + strand, within GFF2321at 38.439 kb on + strand, within GFF2321at 38.439 kb on + strand, within GFF2321at 38.439 kb on + strand, within GFF2321at 38.459 kb on + strand, within GFF2321at 38.459 kb on + strand, within GFF2321at 38.459 kb on + strand, within GFF2321at 38.459 kb on + strand, within GFF2321at 38.459 kb on + strand, within GFF2321at 38.459 kb on + strand, within GFF2321at 38.459 kb on + strand, within GFF2321at 38.515 kb on + strandat 38.515 kb on + strandat 38.543 kb on + strandat 38.550 kb on + strandat 38.550 kb on + strandat 38.550 kb on + strandat 38.550 kb on + strandat 38.550 kb on + strandat 38.550 kb on + strandat 38.550 kb on + strandat 38.550 kb on + strandat 38.550 kb on + strandat 38.551 kb on - strandat 38.551 kb on - strandat 38.551 kb on - strandat 38.561 kb on + strandat 38.577 kb on + strandat 38.583 kb on + strandat 38.583 kb on + strandat 38.663 kb on + strand, within GFF2322at 38.663 kb on + strand, within GFF2322at 38.663 kb on + strand, within GFF2322at 38.664 kb on - strand, within GFF2322at 38.664 kb on - strand, within GFF2322at 38.665 kb on + strand, within GFF2322at 38.665 kb on + strand, within GFF2322at 38.665 kb on + strand, within GFF2322at 38.665 kb on + strand, within GFF2322at 38.888 kb on + strand, within GFF2322at 38.888 kb on + strand, within GFF2322at 38.888 kb on + strand, within GFF2322at 38.889 kb on - strand, within GFF2322at 38.950 kb on + strandat 38.950 kb on + strandat 38.983 kb on + strandat 39.039 kb on - strandat 39.040 kb on + strandat 39.041 kb on - strandat 39.140 kb on + strand, within GFF2323at 39.140 kb on + strand, within GFF2323at 39.140 kb on + strand, within GFF2323at 39.140 kb on + strand, within GFF2323at 39.279 kb on - strand, within GFF2323at 39.279 kb on - strand, within GFF2323at 39.279 kb on - strand, within GFF2323at 39.280 kb on + strand, within GFF2323at 39.280 kb on + strand, within GFF2323at 39.473 kb on - strand, within GFF2323at 39.473 kb on - strand, within GFF2323at 39.536 kb on - strand, within GFF2323at 39.632 kb on - strand, within GFF2323at 39.642 kb on + strand, within GFF2323at 39.642 kb on + strand, within GFF2323at 39.642 kb on + strand, within GFF2323at 39.643 kb on - strand, within GFF2323at 39.710 kb on - strand, within GFF2323at 39.756 kb on + strand, within GFF2323at 39.855 kb on - strandat 39.863 kb on - strandat 39.938 kb on + strandat 39.938 kb on + strandat 39.938 kb on + strandat 39.939 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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37,586 + GFF2320 0.21 +0.0
37,586 + GFF2320 0.21 -1.1
37,586 + GFF2320 0.21 +0.8
37,586 + GFF2320 0.21 -1.1
37,624 + GFF2320 0.30 -1.7
37,744 + GFF2320 0.57 -0.5
37,759 - GFF2320 0.61 -1.9
37,759 - GFF2320 0.61 +0.4
37,781 + GFF2320 0.66 -0.3
37,782 - GFF2320 0.66 -0.4
37,873 + GFF2320 0.87 -2.4
37,874 - GFF2320 0.88 -0.6
37,877 - GFF2320 0.88 -1.3
37,877 - GFF2320 0.88 -0.7
37,877 - GFF2320 0.88 -1.0
37,877 - GFF2320 0.88 -0.4
37,877 - GFF2320 0.88 -0.6
37,897 + -1.0
37,908 - +0.6
37,958 + -2.1
37,962 + -1.1
37,962 + +1.0
37,963 - -1.8
37,963 - +0.3
37,963 - +0.2
37,964 + +2.0
37,964 + -2.1
37,965 - +1.0
37,965 - +0.0
37,965 - -1.0
37,965 - +0.0
37,985 - +0.9
38,001 - -0.4
38,024 + +0.2
38,025 - -1.0
38,039 + -1.1
38,044 + -1.2
38,051 + -1.6
38,189 + GFF2321 0.31 -0.9
38,189 + GFF2321 0.31 -0.0
38,258 + GFF2321 0.44 -0.5
38,258 + GFF2321 0.44 -1.4
38,258 + GFF2321 0.44 -0.1
38,258 + GFF2321 0.44 -2.0
38,258 + GFF2321 0.44 +0.1
38,351 + GFF2321 0.62 -1.1
38,351 + GFF2321 0.62 -0.5
38,351 + GFF2321 0.62 -1.6
38,351 + GFF2321 0.62 -1.5
38,351 + GFF2321 0.62 -0.3
38,351 + GFF2321 0.62 -0.4
38,351 + GFF2321 0.62 -0.9
38,351 + GFF2321 0.62 -0.1
38,436 + GFF2321 0.78 -1.2
38,436 + GFF2321 0.78 -1.0
38,439 + GFF2321 0.79 -0.9
38,439 + GFF2321 0.79 -0.7
38,439 + GFF2321 0.79 +0.3
38,439 + GFF2321 0.79 -1.0
38,439 + GFF2321 0.79 -1.3
38,439 + GFF2321 0.79 +0.0
38,459 + GFF2321 0.83 -0.3
38,459 + GFF2321 0.83 -1.1
38,459 + GFF2321 0.83 -0.7
38,459 + GFF2321 0.83 -0.6
38,459 + GFF2321 0.83 -1.5
38,459 + GFF2321 0.83 -0.9
38,459 + GFF2321 0.83 -1.0
38,515 + -0.3
38,515 + +1.0
38,543 + -0.3
38,550 + -1.5
38,550 + +0.0
38,550 + -0.2
38,550 + -1.0
38,550 + -1.1
38,550 + -0.6
38,550 + +0.8
38,550 + +0.0
38,550 + -0.8
38,551 - -1.0
38,551 - -0.3
38,551 - -0.7
38,561 + -0.6
38,577 + +0.3
38,583 + -0.3
38,583 + -0.5
38,663 + GFF2322 0.23 +0.6
38,663 + GFF2322 0.23 -1.5
38,663 + GFF2322 0.23 -1.5
38,664 - GFF2322 0.23 -1.5
38,664 - GFF2322 0.23 -1.3
38,665 + GFF2322 0.23 -0.8
38,665 + GFF2322 0.23 -1.4
38,665 + GFF2322 0.23 -2.0
38,665 + GFF2322 0.23 -0.5
38,888 + GFF2322 0.83 +0.0
38,888 + GFF2322 0.83 -1.0
38,888 + GFF2322 0.83 -0.5
38,889 - GFF2322 0.83 -1.5
38,950 + +0.2
38,950 + -0.5
38,983 + -0.5
39,039 - -1.3
39,040 + -2.4
39,041 - +0.0
39,140 + GFF2323 0.19 -1.3
39,140 + GFF2323 0.19 -1.3
39,140 + GFF2323 0.19 -1.3
39,140 + GFF2323 0.19 -0.8
39,279 - GFF2323 0.34 -0.8
39,279 - GFF2323 0.34 -1.5
39,279 - GFF2323 0.34 -1.3
39,280 + GFF2323 0.34 +0.0
39,280 + GFF2323 0.34 -1.5
39,473 - GFF2323 0.55 -1.0
39,473 - GFF2323 0.55 +0.0
39,536 - GFF2323 0.62 -1.0
39,632 - GFF2323 0.72 -1.0
39,642 + GFF2323 0.73 +0.2
39,642 + GFF2323 0.73 -1.0
39,642 + GFF2323 0.73 -1.0
39,643 - GFF2323 0.73 -2.0
39,710 - GFF2323 0.80 +0.5
39,756 + GFF2323 0.85 -1.0
39,855 - +0.1
39,863 - -1.3
39,938 + +0.6
39,938 + -1.6
39,938 + +0.0
39,939 - -0.1

Or see this region's nucleotide sequence