Strain Fitness in Methylophilus sp. DMC18 around GFF2292

Experiment: D-Glucose and casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose and casaminos (C)
10,642	+		GFF2291	0.48	-2.0
10,642	+		GFF2291	0.48	-0.6
10,642	+		GFF2291	0.48	-1.2
10,642	+		GFF2291	0.48	-0.0
10,642	+		GFF2291	0.48	-2.1
10,643	-		GFF2291	0.48	-1.0
10,643	-		GFF2291	0.48	-0.9
10,643	-		GFF2291	0.48	-0.8
10,657	+		GFF2291	0.49	-1.0
10,658	-		GFF2291	0.49	-0.8
10,658	-		GFF2291	0.49	+0.8
10,658	-		GFF2291	0.49	+0.0
10,658	-		GFF2291	0.49	-0.6
10,658	-		GFF2291	0.49	+0.4
10,658	-		GFF2291	0.49	+0.6
10,658	-		GFF2291	0.49	-1.3
10,733	+		GFF2291	0.53	-0.8
10,734	-		GFF2291	0.53	-0.8
10,752	+		GFF2291	0.54	-1.0
10,753	-		GFF2291	0.54	+0.6
10,753	-		GFF2291	0.54	-1.8
10,888	+		GFF2291	0.63	-1.0
11,020	-		GFF2291	0.71	-1.8
11,020	-		GFF2291	0.71	-1.4
11,020	-		GFF2291	0.71	+0.6
11,020	-		GFF2291	0.71	-0.1
11,037	+		GFF2291	0.72	-2.2
11,038	-		GFF2291	0.72	-1.8
11,038	-		GFF2291	0.72	-1.8
11,038	-		GFF2291	0.72	-0.1
11,038	-		GFF2291	0.72	+0.8
11,224	+		GFF2291	0.83	+0.4
11,225	-		GFF2291	0.83	+0.6
11,225	-		GFF2291	0.83	-0.2
11,225	-		GFF2291	0.83	+0.3
11,264	+		GFF2291	0.86	-1.1
11,277	+		GFF2291	0.87	-1.0
11,314	+		GFF2291	0.89	-0.5
11,314	+		GFF2291	0.89	-1.4
11,314	+		GFF2291	0.89	+1.2
11,315	-		GFF2291	0.89	-1.5
11,315	-		GFF2291	0.89	+0.7
11,315	-		GFF2291	0.89	+0.2
11,315	-		GFF2291	0.89	-1.0
11,315	-		GFF2291	0.89	-0.4
11,315	-		GFF2291	0.89	-1.8
11,315	-		GFF2291	0.89	-0.4
11,315	-		GFF2291	0.89	-0.5
11,320	+		GFF2291	0.89	+0.1
11,320	+		GFF2291	0.89	+0.0
11,320	+		GFF2291	0.89	-1.0
11,320	+		GFF2291	0.89	-1.3
11,320	+		GFF2291	0.89	-0.8
11,320	+		GFF2291	0.89	-1.0
11,320	+		GFF2291	0.89	-0.5
11,320	+		GFF2291	0.89	-0.5
11,320	+		GFF2291	0.89	+0.0
11,320	+		GFF2291	0.89	+0.2
11,320	+		GFF2291	0.89	+0.7
11,320	+		GFF2291	0.89	-0.8
11,321	-		GFF2291	0.89	+0.0
11,321	-		GFF2291	0.89	-0.1
11,321	-		GFF2291	0.89	+0.1
11,321	-		GFF2291	0.89	-0.4
11,321	-		GFF2291	0.89	+0.2
11,321	-		GFF2291	0.89	+0.4
11,321	-		GFF2291	0.89	+0.3
11,321	-		GFF2291	0.89	-0.7
11,321	-		GFF2291	0.89	+0.8
11,321	-		GFF2291	0.89	-1.0
11,321	-		GFF2291	0.89	-0.4
11,321	-		GFF2291	0.89	+0.0
11,321	-		GFF2291	0.89	-0.4
11,321	-		GFF2291	0.89	-1.0
11,321	-		GFF2291	0.89	+0.0
11,321	-		GFF2291	0.89	+0.3
11,321	-		GFF2291	0.89	-1.0
11,321	-		GFF2291	0.89	-1.0
11,321	-		GFF2291	0.89	+1.2
11,321	-		GFF2291	0.89	-0.5
11,326	-		GFF2291	0.90	+0.5
11,360	+				-0.2
11,450	+				-0.4
11,450	+				-1.7
11,451	-				-0.8
11,451	-				-1.0
11,451	-				-0.3
11,451	-				+0.2
11,496	-				-0.7
11,496	-				+0.3
11,496	-				-1.0
11,511	-				+0.1
11,514	+				+0.3
11,525	+				-0.3
11,525	+				+0.0
11,530	+				-1.0
11,531	-				-0.8
11,531	-				+0.2
11,531	-				+0.0
11,536	-				-2.4
11,536	-				+0.3
11,551	-				-1.0
11,602	+				-1.0
11,603	-				-0.5
11,604	+				-0.6
11,604	+				+0.0
11,605	-				-0.8
11,605	-				-1.5
11,613	+				-0.7
11,613	+				+0.0
11,613	+				+0.6
11,613	+				-0.5
11,614	-				-1.3
11,614	-				+0.0
11,614	-				-0.8
11,636	+				+0.0
11,636	+				-0.8
11,636	+				-0.3
11,637	-				+1.3
11,637	-				-2.8
11,640	+				+0.7
11,649	+				-1.3
11,669	+				-1.6
11,669	+				-1.8
11,669	+				-3.3
11,669	+				-1.8
11,704	+				-0.5
11,704	+				-0.2
11,704	+				-1.5
11,704	+				-0.8
11,705	-				-2.3
11,705	-				-1.7
11,705	-				-0.4
11,705	-				-0.2
11,705	-				-0.4
11,705	-				-0.8
11,705	-				-1.4
11,742	-		GFF2292	0.11	-0.9
11,742	-		GFF2292	0.11	-1.0
11,812	+		GFF2292	0.17	-0.1
11,907	+		GFF2292	0.25	-1.0
11,907	+		GFF2292	0.25	-0.3
11,907	+		GFF2292	0.25	-1.3
11,907	+		GFF2292	0.25	-1.0
11,979	+		GFF2292	0.31	-2.9
11,980	-		GFF2292	0.32	-0.1
11,980	-		GFF2292	0.32	-0.4
12,033	-		GFF2292	0.36	-1.3
12,066	+		GFF2292	0.39	-2.0
12,067	-		GFF2292	0.39	-1.3
12,173	+		GFF2292	0.48	-2.1
12,173	+		GFF2292	0.48	-1.3
12,174	-		GFF2292	0.48	-2.1
12,180	+		GFF2292	0.49	+0.0
12,181	-		GFF2292	0.49	-1.5
12,181	-		GFF2292	0.49	-0.8
12,181	-		GFF2292	0.49	-0.8
12,181	-		GFF2292	0.49	-0.2
12,181	-		GFF2292	0.49	-1.1
12,219	+		GFF2292	0.52	-2.3
12,260	+		GFF2292	0.56	+0.0
12,261	-		GFF2292	0.56	-1.3
12,264	+		GFF2292	0.56	-1.8
12,273	+		GFF2292	0.57	-2.1
12,274	-		GFF2292	0.57	-2.4
12,274	-		GFF2292	0.57	-0.1
12,335	-		GFF2292	0.62	-1.7
12,335	-		GFF2292	0.62	-0.8
12,350	-		GFF2292	0.63	-1.0
12,430	+		GFF2292	0.70	-0.3
12,430	+		GFF2292	0.70	-1.6
12,458	+		GFF2292	0.73	+0.7
12,459	-		GFF2292	0.73	-0.9
12,474	+		GFF2292	0.74	-1.0
12,474	+		GFF2292	0.74	-0.7
12,474	+		GFF2292	0.74	+0.5
12,475	-		GFF2292	0.74	-2.0
12,475	-		GFF2292	0.74	-1.0
12,481	-		GFF2292	0.75	-1.3
12,536	+		GFF2292	0.79	-1.0
12,537	-		GFF2292	0.80	-1.8
12,537	-		GFF2292	0.80	+0.3
12,537	-		GFF2292	0.80	-0.3
12,537	-		GFF2292	0.80	-1.3
12,553	+		GFF2292	0.81	+0.3
12,553	+		GFF2292	0.81	-1.4
12,553	+		GFF2292	0.81	-2.4
12,557	+		GFF2292	0.81	-1.0
12,557	+		GFF2292	0.81	-2.2
12,557	+		GFF2292	0.81	-0.1
12,557	+		GFF2292	0.81	-0.7
12,557	+		GFF2292	0.81	-2.1
12,558	-		GFF2292	0.81	+0.4
12,558	-		GFF2292	0.81	-1.6
12,558	-		GFF2292	0.81	+0.0
12,654	+		GFF2292	0.90	+0.0
12,717	+				+0.1
12,717	+				-2.9
12,727	+				+0.0
12,727	+				-0.8
12,727	+				-0.8
12,727	+				-1.0
12,727	+				-1.3
12,727	+				-2.0
12,728	-				-0.5
12,728	-				+0.2
12,728	-				-1.0
12,728	-				-1.0
12,728	-				-2.0
12,728	-				-0.6
12,772	+				-0.2
12,772	+				-2.3
12,773	-				+0.0
12,781	-				-0.7
13,481	-				-1.1
13,481	-				-0.5
13,491	-				-0.5
13,498	+				-1.0
13,499	-				-0.2
13,499	-				-0.2
13,499	-				+0.5
13,561	-		GFF2294	0.11	+0.5
13,561	-		GFF2294	0.11	-2.9
13,578	+		GFF2294	0.12	+0.8
13,579	-		GFF2294	0.13	-2.1
13,579	-		GFF2294	0.13	+0.0
13,597	-		GFF2294	0.14	+0.7
13,649	+		GFF2294	0.19	-1.0
13,650	-		GFF2294	0.19	-1.5
13,650	-		GFF2294	0.19	-0.4
13,650	-		GFF2294	0.19	+0.4
13,650	-		GFF2294	0.19	-0.3
13,655	+		GFF2294	0.19	-1.0
13,656	-		GFF2294	0.19	-0.2
13,656	-		GFF2294	0.19	-1.0
13,692	+		GFF2294	0.23	-1.5
13,693	-		GFF2294	0.23	-1.0
13,735	-		GFF2294	0.26	-1.7