Strain Fitness in Methylophilus sp. DMC18 around GFF2278

Experiment: D-Glucose and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2277 and GFF2278 are separated by 219 nucleotidesGFF2278 and GFF2279 are separated by 240 nucleotidesGFF2279 and GFF2280 overlap by 8 nucleotides GFF2277 - Efflux pump periplasmic linker BepD, at 343,401 to 344,483 GFF2277 GFF2278 - hypothetical protein, at 344,703 to 345,038 GFF2278 GFF2279 - Antiholin-like protein LrgB, at 345,279 to 346,019 GFF2279 GFF2280 - Antiholin-like protein LrgA, at 346,012 to 346,380 GFF2280 Position (kb) 344 345 346Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 343.713 kb on + strand, within GFF2277at 343.713 kb on + strand, within GFF2277at 343.713 kb on + strand, within GFF2277at 343.713 kb on + strand, within GFF2277at 343.714 kb on - strand, within GFF2277at 343.714 kb on - strand, within GFF2277at 343.878 kb on - strand, within GFF2277at 343.878 kb on - strand, within GFF2277at 343.888 kb on + strand, within GFF2277at 343.888 kb on + strand, within GFF2277at 343.888 kb on + strand, within GFF2277at 343.888 kb on + strand, within GFF2277at 343.889 kb on - strand, within GFF2277at 343.889 kb on - strand, within GFF2277at 343.889 kb on - strand, within GFF2277at 343.913 kb on - strand, within GFF2277at 343.913 kb on - strand, within GFF2277at 343.974 kb on - strand, within GFF2277at 344.206 kb on + strand, within GFF2277at 344.206 kb on + strand, within GFF2277at 344.206 kb on + strand, within GFF2277at 344.206 kb on + strand, within GFF2277at 344.207 kb on - strand, within GFF2277at 344.207 kb on - strand, within GFF2277at 344.207 kb on - strand, within GFF2277at 344.207 kb on - strand, within GFF2277at 344.207 kb on - strand, within GFF2277at 344.210 kb on + strand, within GFF2277at 344.210 kb on + strand, within GFF2277at 344.251 kb on + strand, within GFF2277at 344.251 kb on + strand, within GFF2277at 344.251 kb on + strand, within GFF2277at 344.252 kb on - strand, within GFF2277at 344.252 kb on - strand, within GFF2277at 344.252 kb on - strand, within GFF2277at 344.252 kb on - strand, within GFF2277at 344.252 kb on - strand, within GFF2277at 344.252 kb on - strand, within GFF2277at 344.252 kb on - strand, within GFF2277at 344.252 kb on - strand, within GFF2277at 344.252 kb on - strand, within GFF2277at 344.274 kb on - strand, within GFF2277at 344.274 kb on - strand, within GFF2277at 344.274 kb on - strand, within GFF2277at 344.284 kb on + strand, within GFF2277at 344.284 kb on + strand, within GFF2277at 344.284 kb on + strand, within GFF2277at 344.313 kb on - strand, within GFF2277at 344.341 kb on + strand, within GFF2277at 344.341 kb on + strand, within GFF2277at 344.341 kb on + strand, within GFF2277at 344.341 kb on + strand, within GFF2277at 344.341 kb on + strand, within GFF2277at 344.342 kb on - strand, within GFF2277at 344.342 kb on - strand, within GFF2277at 344.342 kb on - strand, within GFF2277at 344.342 kb on - strand, within GFF2277at 344.342 kb on - strand, within GFF2277at 344.342 kb on - strand, within GFF2277at 344.342 kb on - strand, within GFF2277at 344.342 kb on - strand, within GFF2277at 344.342 kb on - strand, within GFF2277at 344.342 kb on - strand, within GFF2277at 344.342 kb on - strand, within GFF2277at 344.424 kb on - strandat 344.424 kb on - strandat 344.467 kb on - strandat 344.483 kb on + strandat 344.483 kb on + strandat 344.483 kb on + strandat 344.483 kb on + strandat 344.483 kb on + strandat 344.483 kb on + strandat 344.483 kb on + strandat 344.483 kb on + strandat 344.483 kb on + strandat 344.483 kb on + strandat 344.483 kb on + strandat 344.483 kb on + strandat 344.483 kb on + strandat 344.484 kb on - strandat 344.484 kb on - strandat 344.484 kb on - strandat 344.484 kb on - strandat 344.484 kb on - strandat 344.484 kb on - strandat 344.484 kb on - strandat 344.484 kb on - strandat 344.495 kb on + strandat 344.496 kb on - strandat 344.496 kb on - strandat 344.496 kb on - strandat 344.500 kb on + strandat 344.501 kb on - strandat 344.504 kb on + strandat 344.505 kb on - strandat 344.505 kb on - strandat 344.519 kb on + strandat 344.519 kb on + strandat 344.520 kb on - strandat 344.520 kb on - strandat 344.548 kb on + strandat 344.548 kb on + strandat 344.548 kb on + strandat 344.548 kb on + strandat 344.548 kb on + strandat 344.548 kb on + strandat 344.548 kb on + strandat 344.549 kb on - strandat 344.549 kb on - strandat 344.549 kb on - strandat 344.554 kb on + strandat 344.554 kb on + strandat 344.555 kb on - strandat 344.555 kb on - strandat 344.555 kb on - strandat 344.600 kb on + strandat 344.601 kb on - strandat 344.601 kb on - strandat 344.654 kb on + strandat 344.654 kb on + strandat 344.654 kb on + strandat 344.675 kb on - strandat 344.675 kb on - strandat 344.760 kb on - strand, within GFF2278at 344.847 kb on + strand, within GFF2278at 344.847 kb on + strand, within GFF2278at 344.888 kb on + strand, within GFF2278at 344.889 kb on - strand, within GFF2278at 344.926 kb on + strand, within GFF2278at 344.927 kb on - strand, within GFF2278at 345.010 kb on + strandat 345.010 kb on + strandat 345.010 kb on + strandat 345.011 kb on - strandat 345.011 kb on - strandat 345.011 kb on - strandat 345.011 kb on - strandat 345.020 kb on + strandat 345.020 kb on + strandat 345.021 kb on - strandat 345.021 kb on - strandat 345.021 kb on - strandat 345.032 kb on + strandat 345.032 kb on + strandat 345.033 kb on - strandat 345.038 kb on + strandat 345.038 kb on + strandat 345.038 kb on + strandat 345.038 kb on + strandat 345.039 kb on - strandat 345.039 kb on - strandat 345.039 kb on - strandat 345.040 kb on + strandat 345.040 kb on + strandat 345.040 kb on + strandat 345.040 kb on + strandat 345.040 kb on + strandat 345.040 kb on + strandat 345.040 kb on + strandat 345.041 kb on - strandat 345.041 kb on - strandat 345.041 kb on - strandat 345.041 kb on - strandat 345.041 kb on - strandat 345.056 kb on - strandat 345.056 kb on - strandat 345.056 kb on - strandat 345.056 kb on - strandat 345.071 kb on + strandat 345.071 kb on + strandat 345.071 kb on + strandat 345.072 kb on - strandat 345.072 kb on - strandat 345.072 kb on - strandat 345.072 kb on - strandat 345.072 kb on - strandat 345.074 kb on + strandat 345.075 kb on - strandat 345.075 kb on - strandat 345.083 kb on + strandat 345.083 kb on + strandat 345.083 kb on + strandat 345.083 kb on + strandat 345.083 kb on + strandat 345.083 kb on + strandat 345.083 kb on + strandat 345.083 kb on + strandat 345.083 kb on + strandat 345.083 kb on + strandat 345.084 kb on - strandat 345.084 kb on - strandat 345.084 kb on - strandat 345.084 kb on - strandat 345.084 kb on - strandat 345.089 kb on + strandat 345.089 kb on + strandat 345.090 kb on - strandat 345.097 kb on - strandat 345.097 kb on - strandat 345.107 kb on + strandat 345.107 kb on + strandat 345.108 kb on - strandat 345.175 kb on - strandat 345.185 kb on + strandat 345.185 kb on + strandat 345.185 kb on + strandat 345.186 kb on - strandat 345.194 kb on + strandat 345.194 kb on + strandat 345.194 kb on + strandat 345.194 kb on + strandat 345.194 kb on + strandat 345.194 kb on + strandat 345.194 kb on + strandat 345.195 kb on - strandat 345.195 kb on - strandat 345.195 kb on - strandat 345.209 kb on + strandat 345.209 kb on + strandat 345.209 kb on + strandat 345.209 kb on + strandat 345.210 kb on - strandat 345.210 kb on - strandat 345.210 kb on - strandat 345.210 kb on - strandat 345.210 kb on - strandat 345.210 kb on - strandat 345.227 kb on - strandat 345.264 kb on + strandat 345.264 kb on + strandat 345.264 kb on + strandat 345.264 kb on + strandat 345.265 kb on - strandat 345.265 kb on - strandat 345.265 kb on - strandat 345.265 kb on - strandat 345.280 kb on + strandat 345.280 kb on + strandat 345.280 kb on + strandat 345.280 kb on + strandat 345.281 kb on - strandat 345.281 kb on - strandat 345.300 kb on + strandat 345.301 kb on - strandat 345.305 kb on - strandat 345.305 kb on - strandat 345.305 kb on - strandat 345.305 kb on - strandat 345.312 kb on + strandat 345.312 kb on + strandat 345.313 kb on - strandat 345.313 kb on - strandat 345.313 kb on - strandat 345.313 kb on - strandat 345.313 kb on - strandat 345.395 kb on + strand, within GFF2279at 345.396 kb on - strand, within GFF2279at 345.396 kb on - strand, within GFF2279at 345.486 kb on - strand, within GFF2279at 345.487 kb on + strand, within GFF2279at 345.487 kb on + strand, within GFF2279at 345.487 kb on + strand, within GFF2279at 345.487 kb on + strand, within GFF2279at 345.487 kb on + strand, within GFF2279at 345.487 kb on + strand, within GFF2279at 345.487 kb on + strand, within GFF2279at 345.487 kb on + strand, within GFF2279at 345.487 kb on + strand, within GFF2279at 345.487 kb on + strand, within GFF2279at 345.487 kb on + strand, within GFF2279at 345.487 kb on + strand, within GFF2279at 345.488 kb on - strand, within GFF2279at 345.488 kb on - strand, within GFF2279at 345.488 kb on - strand, within GFF2279at 345.607 kb on + strand, within GFF2279at 345.607 kb on + strand, within GFF2279at 345.607 kb on + strand, within GFF2279at 345.607 kb on + strand, within GFF2279at 345.607 kb on + strand, within GFF2279at 345.608 kb on - strand, within GFF2279at 345.608 kb on - strand, within GFF2279at 345.608 kb on - strand, within GFF2279at 345.608 kb on - strand, within GFF2279at 345.608 kb on - strand, within GFF2279at 345.608 kb on - strand, within GFF2279at 345.671 kb on + strand, within GFF2279at 345.671 kb on + strand, within GFF2279at 345.672 kb on - strand, within GFF2279at 345.745 kb on + strand, within GFF2279at 345.745 kb on + strand, within GFF2279at 345.745 kb on + strand, within GFF2279at 345.745 kb on + strand, within GFF2279at 345.745 kb on + strand, within GFF2279at 345.745 kb on + strand, within GFF2279at 345.745 kb on + strand, within GFF2279at 345.745 kb on + strand, within GFF2279at 345.746 kb on - strand, within GFF2279at 345.746 kb on - strand, within GFF2279at 345.746 kb on - strand, within GFF2279at 345.746 kb on - strand, within GFF2279at 345.746 kb on - strand, within GFF2279at 345.746 kb on - strand, within GFF2279at 345.746 kb on - strand, within GFF2279at 345.746 kb on - strand, within GFF2279at 345.746 kb on - strand, within GFF2279at 345.747 kb on + strand, within GFF2279at 345.823 kb on + strand, within GFF2279at 345.843 kb on + strand, within GFF2279at 345.844 kb on - strand, within GFF2279at 345.844 kb on - strand, within GFF2279at 345.913 kb on + strand, within GFF2279at 345.913 kb on + strand, within GFF2279at 345.913 kb on + strand, within GFF2279at 345.913 kb on + strand, within GFF2279at 345.913 kb on + strand, within GFF2279at 345.913 kb on + strand, within GFF2279at 345.914 kb on - strand, within GFF2279at 345.914 kb on - strand, within GFF2279at 345.914 kb on - strand, within GFF2279at 345.914 kb on - strand, within GFF2279at 345.934 kb on + strand, within GFF2279at 345.947 kb on + strandat 345.948 kb on - strandat 345.951 kb on - strandat 345.951 kb on - strandat 345.982 kb on + strandat 345.982 kb on + strandat 345.983 kb on - strandat 346.013 kb on + strandat 346.014 kb on - strandat 346.014 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
remove
343,713 + GFF2277 0.29 -1.5
343,713 + GFF2277 0.29 -2.5
343,713 + GFF2277 0.29 -1.8
343,713 + GFF2277 0.29 -4.2
343,714 - GFF2277 0.29 -2.8
343,714 - GFF2277 0.29 -1.9
343,878 - GFF2277 0.44 -4.2
343,878 - GFF2277 0.44 +0.1
343,888 + GFF2277 0.45 -2.0
343,888 + GFF2277 0.45 -1.5
343,888 + GFF2277 0.45 -1.0
343,888 + GFF2277 0.45 -1.8
343,889 - GFF2277 0.45 -2.2
343,889 - GFF2277 0.45 -2.5
343,889 - GFF2277 0.45 -1.8
343,913 - GFF2277 0.47 -2.5
343,913 - GFF2277 0.47 -2.4
343,974 - GFF2277 0.53 -2.6
344,206 + GFF2277 0.74 -2.2
344,206 + GFF2277 0.74 +0.1
344,206 + GFF2277 0.74 -2.6
344,206 + GFF2277 0.74 -2.2
344,207 - GFF2277 0.74 -3.3
344,207 - GFF2277 0.74 -2.0
344,207 - GFF2277 0.74 -3.1
344,207 - GFF2277 0.74 -0.8
344,207 - GFF2277 0.74 -2.2
344,210 + GFF2277 0.75 -2.8
344,210 + GFF2277 0.75 -2.8
344,251 + GFF2277 0.78 -3.0
344,251 + GFF2277 0.78 -2.9
344,251 + GFF2277 0.78 -2.5
344,252 - GFF2277 0.79 -2.4
344,252 - GFF2277 0.79 -2.6
344,252 - GFF2277 0.79 -2.7
344,252 - GFF2277 0.79 -0.5
344,252 - GFF2277 0.79 -0.5
344,252 - GFF2277 0.79 -1.9
344,252 - GFF2277 0.79 -2.1
344,252 - GFF2277 0.79 -1.3
344,252 - GFF2277 0.79 -2.6
344,274 - GFF2277 0.81 -2.1
344,274 - GFF2277 0.81 -1.1
344,274 - GFF2277 0.81 -3.5
344,284 + GFF2277 0.82 -1.1
344,284 + GFF2277 0.82 -1.5
344,284 + GFF2277 0.82 -2.0
344,313 - GFF2277 0.84 -2.9
344,341 + GFF2277 0.87 -2.9
344,341 + GFF2277 0.87 -0.9
344,341 + GFF2277 0.87 -1.9
344,341 + GFF2277 0.87 -2.4
344,341 + GFF2277 0.87 -3.3
344,342 - GFF2277 0.87 -2.4
344,342 - GFF2277 0.87 -2.7
344,342 - GFF2277 0.87 -2.7
344,342 - GFF2277 0.87 -1.6
344,342 - GFF2277 0.87 -2.6
344,342 - GFF2277 0.87 -1.7
344,342 - GFF2277 0.87 -1.7
344,342 - GFF2277 0.87 -2.8
344,342 - GFF2277 0.87 -1.7
344,342 - GFF2277 0.87 -3.9
344,342 - GFF2277 0.87 -2.1
344,424 - -1.7
344,424 - -1.3
344,467 - -2.1
344,483 + -3.2
344,483 + -3.1
344,483 + -2.3
344,483 + -1.2
344,483 + -2.2
344,483 + -2.3
344,483 + -1.7
344,483 + -1.9
344,483 + -1.7
344,483 + -2.1
344,483 + -1.5
344,483 + -2.4
344,483 + -1.5
344,484 - -1.9
344,484 - -2.2
344,484 - -1.2
344,484 - -2.3
344,484 - -3.4
344,484 - -1.9
344,484 - -3.5
344,484 - -1.3
344,495 + -3.1
344,496 - -3.0
344,496 - -1.1
344,496 - -2.6
344,500 + -3.4
344,501 - +0.4
344,504 + -1.2
344,505 - -0.1
344,505 - -0.5
344,519 + -1.9
344,519 + -0.9
344,520 - -1.5
344,520 - -0.7
344,548 + -0.5
344,548 + -2.0
344,548 + -2.6
344,548 + +0.1
344,548 + -1.5
344,548 + -2.9
344,548 + -1.8
344,549 - -1.2
344,549 - -0.4
344,549 - +0.5
344,554 + -0.5
344,554 + -1.4
344,555 - +0.3
344,555 - -0.1
344,555 - -0.9
344,600 + -1.5
344,601 - -1.5
344,601 - -0.3
344,654 + -0.5
344,654 + -2.5
344,654 + -1.4
344,675 - -0.7
344,675 - +0.1
344,760 - GFF2278 0.17 +0.3
344,847 + GFF2278 0.43 -2.9
344,847 + GFF2278 0.43 -0.7
344,888 + GFF2278 0.55 -2.8
344,889 - GFF2278 0.55 -1.8
344,926 + GFF2278 0.66 -0.0
344,927 - GFF2278 0.67 -2.8
345,010 + -3.1
345,010 + -0.5
345,010 + -2.3
345,011 - -1.7
345,011 - -2.4
345,011 - -3.0
345,011 - -2.1
345,020 + -0.9
345,020 + -2.4
345,021 - -3.2
345,021 - -2.5
345,021 - -0.1
345,032 + -2.3
345,032 + -2.2
345,033 - -3.6
345,038 + -2.4
345,038 + -2.4
345,038 + -2.5
345,038 + -3.2
345,039 - -1.6
345,039 - -3.0
345,039 - -1.8
345,040 + -0.3
345,040 + -1.7
345,040 + -2.3
345,040 + +0.1
345,040 + -1.6
345,040 + -3.2
345,040 + -3.2
345,041 - -0.5
345,041 - -0.9
345,041 - -1.0
345,041 - -0.5
345,041 - -2.2
345,056 - -1.5
345,056 - -1.3
345,056 - -1.8
345,056 - -1.0
345,071 + -1.9
345,071 + -2.8
345,071 + -0.5
345,072 - +0.1
345,072 - +0.3
345,072 - -1.2
345,072 - +0.1
345,072 - -0.1
345,074 + -1.7
345,075 - -0.5
345,075 - -1.1
345,083 + -3.1
345,083 + +0.1
345,083 + -2.1
345,083 + -1.5
345,083 + -1.2
345,083 + -1.8
345,083 + -2.5
345,083 + -2.2
345,083 + -3.4
345,083 + -0.5
345,084 - -2.2
345,084 - -0.7
345,084 - +1.1
345,084 - -0.1
345,084 - -0.5
345,089 + -2.9
345,089 + -1.5
345,090 - -0.8
345,097 - -0.1
345,097 - +0.1
345,107 + -0.8
345,107 + -2.4
345,108 - -0.9
345,175 - +1.3
345,185 + -0.9
345,185 + +1.7
345,185 + -1.2
345,186 - -0.2
345,194 + -0.4
345,194 + -1.6
345,194 + -1.5
345,194 + -2.2
345,194 + -0.8
345,194 + +0.1
345,194 + -1.3
345,195 - -0.4
345,195 - +0.1
345,195 - -1.3
345,209 + -1.5
345,209 + -1.1
345,209 + -0.3
345,209 + -3.2
345,210 - -1.0
345,210 - -1.5
345,210 - -2.1
345,210 - -0.7
345,210 - -2.9
345,210 - -0.7
345,227 - +1.1
345,264 + +0.4
345,264 + -0.5
345,264 + -0.1
345,264 + +0.3
345,265 - -0.6
345,265 - +0.3
345,265 - +0.5
345,265 - +0.2
345,280 + -0.7
345,280 + -1.2
345,280 + +0.1
345,280 + -0.7
345,281 - -1.7
345,281 - -0.7
345,300 + -0.8
345,301 - -1.1
345,305 - -0.9
345,305 - -0.7
345,305 - -0.8
345,305 - -0.2
345,312 + -0.6
345,312 + +0.1
345,313 - -0.7
345,313 - -1.3
345,313 - -1.5
345,313 - -0.9
345,313 - -0.7
345,395 + GFF2279 0.16 -0.9
345,396 - GFF2279 0.16 -0.7
345,396 - GFF2279 0.16 +0.1
345,486 - GFF2279 0.28 -0.6
345,487 + GFF2279 0.28 -0.9
345,487 + GFF2279 0.28 +0.4
345,487 + GFF2279 0.28 +1.1
345,487 + GFF2279 0.28 -1.0
345,487 + GFF2279 0.28 +0.6
345,487 + GFF2279 0.28 -0.8
345,487 + GFF2279 0.28 -1.2
345,487 + GFF2279 0.28 +0.3
345,487 + GFF2279 0.28 -1.2
345,487 + GFF2279 0.28 -0.8
345,487 + GFF2279 0.28 +0.4
345,487 + GFF2279 0.28 +1.3
345,488 - GFF2279 0.28 +0.1
345,488 - GFF2279 0.28 -0.1
345,488 - GFF2279 0.28 +0.1
345,607 + GFF2279 0.44 +0.2
345,607 + GFF2279 0.44 +0.5
345,607 + GFF2279 0.44 +0.5
345,607 + GFF2279 0.44 -0.2
345,607 + GFF2279 0.44 -1.1
345,608 - GFF2279 0.44 -0.9
345,608 - GFF2279 0.44 -0.8
345,608 - GFF2279 0.44 -0.9
345,608 - GFF2279 0.44 +0.3
345,608 - GFF2279 0.44 -0.1
345,608 - GFF2279 0.44 +0.1
345,671 + GFF2279 0.53 +0.9
345,671 + GFF2279 0.53 -2.2
345,672 - GFF2279 0.53 +0.1
345,745 + GFF2279 0.63 -0.5
345,745 + GFF2279 0.63 -0.2
345,745 + GFF2279 0.63 -0.2
345,745 + GFF2279 0.63 -0.8
345,745 + GFF2279 0.63 -0.9
345,745 + GFF2279 0.63 -1.9
345,745 + GFF2279 0.63 +0.1
345,745 + GFF2279 0.63 -1.3
345,746 - GFF2279 0.63 -0.8
345,746 - GFF2279 0.63 -0.5
345,746 - GFF2279 0.63 +0.7
345,746 - GFF2279 0.63 -0.7
345,746 - GFF2279 0.63 -1.0
345,746 - GFF2279 0.63 -0.4
345,746 - GFF2279 0.63 +0.1
345,746 - GFF2279 0.63 +0.1
345,746 - GFF2279 0.63 -0.8
345,747 + GFF2279 0.63 +0.1
345,823 + GFF2279 0.73 -0.8
345,843 + GFF2279 0.76 -0.2
345,844 - GFF2279 0.76 -0.9
345,844 - GFF2279 0.76 -1.2
345,913 + GFF2279 0.86 -0.2
345,913 + GFF2279 0.86 +0.1
345,913 + GFF2279 0.86 +0.1
345,913 + GFF2279 0.86 +0.6
345,913 + GFF2279 0.86 -1.9
345,913 + GFF2279 0.86 -0.4
345,914 - GFF2279 0.86 -1.0
345,914 - GFF2279 0.86 +0.2
345,914 - GFF2279 0.86 +0.4
345,914 - GFF2279 0.86 -1.2
345,934 + GFF2279 0.88 -1.4
345,947 + -1.2
345,948 - -0.7
345,951 - +0.2
345,951 - -0.9
345,982 + -0.1
345,982 + +0.1
345,983 - -0.5
346,013 + -0.2
346,014 - -0.3
346,014 - -0.5

Or see this region's nucleotide sequence