Strain Fitness in Methylophilus sp. DMC18 around GFF2174

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2173 and GFF2174 are separated by 117 nucleotidesGFF2174 and GFF2175 are separated by 12 nucleotides GFF2173 - D-amino acid dehydrogenase 1, at 222,212 to 223,483 GFF2173 GFF2174 - Glutathione synthetase, at 223,601 to 224,536 GFF2174 GFF2175 - hypothetical protein, at 224,549 to 225,874 GFF2175 Position (kb) 223 224 225Strain fitness (log2 ratio) -2 -1 0 1at 222.645 kb on + strand, within GFF2173at 222.653 kb on + strand, within GFF2173at 222.726 kb on + strand, within GFF2173at 222.726 kb on + strand, within GFF2173at 222.726 kb on + strand, within GFF2173at 222.726 kb on + strand, within GFF2173at 222.726 kb on + strand, within GFF2173at 222.727 kb on - strand, within GFF2173at 222.727 kb on - strand, within GFF2173at 222.727 kb on - strand, within GFF2173at 222.727 kb on - strand, within GFF2173at 222.743 kb on + strand, within GFF2173at 222.743 kb on + strand, within GFF2173at 222.743 kb on + strand, within GFF2173at 222.774 kb on - strand, within GFF2173at 222.804 kb on - strand, within GFF2173at 222.812 kb on + strand, within GFF2173at 222.812 kb on + strand, within GFF2173at 222.812 kb on + strand, within GFF2173at 222.812 kb on + strand, within GFF2173at 222.813 kb on + strand, within GFF2173at 222.813 kb on - strand, within GFF2173at 222.813 kb on - strand, within GFF2173at 222.813 kb on - strand, within GFF2173at 222.813 kb on - strand, within GFF2173at 222.813 kb on - strand, within GFF2173at 222.813 kb on - strand, within GFF2173at 222.874 kb on + strand, within GFF2173at 222.878 kb on + strand, within GFF2173at 222.878 kb on + strand, within GFF2173at 222.878 kb on + strand, within GFF2173at 222.879 kb on - strand, within GFF2173at 222.879 kb on - strand, within GFF2173at 222.879 kb on - strand, within GFF2173at 222.879 kb on - strand, within GFF2173at 222.879 kb on - strand, within GFF2173at 222.879 kb on - strand, within GFF2173at 222.912 kb on + strand, within GFF2173at 222.912 kb on + strand, within GFF2173at 222.912 kb on + strand, within GFF2173at 222.912 kb on + strand, within GFF2173at 222.912 kb on + strand, within GFF2173at 222.913 kb on - strand, within GFF2173at 222.913 kb on - strand, within GFF2173at 222.913 kb on - strand, within GFF2173at 222.938 kb on + strand, within GFF2173at 222.938 kb on + strand, within GFF2173at 222.939 kb on - strand, within GFF2173at 222.939 kb on - strand, within GFF2173at 222.965 kb on + strand, within GFF2173at 223.016 kb on + strand, within GFF2173at 223.016 kb on + strand, within GFF2173at 223.017 kb on - strand, within GFF2173at 223.024 kb on + strand, within GFF2173at 223.064 kb on + strand, within GFF2173at 223.065 kb on - strand, within GFF2173at 223.070 kb on + strand, within GFF2173at 223.070 kb on + strand, within GFF2173at 223.070 kb on + strand, within GFF2173at 223.071 kb on - strand, within GFF2173at 223.071 kb on - strand, within GFF2173at 223.071 kb on - strand, within GFF2173at 223.071 kb on - strand, within GFF2173at 223.288 kb on + strand, within GFF2173at 223.288 kb on + strand, within GFF2173at 223.288 kb on + strand, within GFF2173at 223.289 kb on - strand, within GFF2173at 223.289 kb on - strand, within GFF2173at 223.397 kb on + strandat 223.398 kb on - strandat 223.398 kb on - strandat 223.421 kb on + strandat 223.422 kb on - strandat 223.422 kb on - strandat 223.432 kb on - strandat 223.435 kb on - strandat 223.452 kb on - strandat 223.525 kb on + strandat 223.545 kb on - strandat 223.572 kb on + strandat 223.572 kb on + strandat 223.572 kb on + strandat 223.572 kb on + strandat 223.573 kb on - strandat 223.573 kb on - strandat 223.573 kb on - strandat 223.573 kb on - strandat 223.573 kb on - strandat 223.945 kb on + strand, within GFF2174at 223.946 kb on - strand, within GFF2174at 223.947 kb on + strand, within GFF2174at 224.004 kb on + strand, within GFF2174at 224.005 kb on - strand, within GFF2174at 224.009 kb on - strand, within GFF2174at 224.009 kb on - strand, within GFF2174at 224.169 kb on - strand, within GFF2174at 224.247 kb on + strand, within GFF2174at 224.247 kb on + strand, within GFF2174at 224.247 kb on + strand, within GFF2174at 224.247 kb on + strand, within GFF2174at 224.248 kb on - strand, within GFF2174at 224.254 kb on + strand, within GFF2174at 224.254 kb on + strand, within GFF2174at 224.254 kb on + strand, within GFF2174at 224.254 kb on + strand, within GFF2174at 224.255 kb on - strand, within GFF2174at 224.255 kb on - strand, within GFF2174at 224.255 kb on - strand, within GFF2174at 224.255 kb on - strand, within GFF2174at 224.255 kb on - strand, within GFF2174at 224.255 kb on - strand, within GFF2174at 224.256 kb on + strand, within GFF2174at 224.257 kb on - strand, within GFF2174at 224.257 kb on - strand, within GFF2174at 224.263 kb on - strand, within GFF2174at 224.287 kb on + strand, within GFF2174at 224.436 kb on - strand, within GFF2174at 224.491 kb on - strandat 224.551 kb on - strandat 224.643 kb on + strandat 224.644 kb on - strandat 224.811 kb on + strand, within GFF2175at 224.812 kb on - strand, within GFF2175at 225.037 kb on - strand, within GFF2175at 225.152 kb on + strand, within GFF2175at 225.208 kb on - strand, within GFF2175at 225.208 kb on - strand, within GFF2175at 225.208 kb on - strand, within GFF2175at 225.254 kb on + strand, within GFF2175at 225.255 kb on - strand, within GFF2175at 225.315 kb on + strand, within GFF2175at 225.450 kb on - strand, within GFF2175

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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222,645 + GFF2173 0.34 -0.8
222,653 + GFF2173 0.35 -0.5
222,726 + GFF2173 0.40 -1.7
222,726 + GFF2173 0.40 -1.1
222,726 + GFF2173 0.40 -1.1
222,726 + GFF2173 0.40 -0.9
222,726 + GFF2173 0.40 -0.9
222,727 - GFF2173 0.40 -1.1
222,727 - GFF2173 0.40 -0.4
222,727 - GFF2173 0.40 -0.5
222,727 - GFF2173 0.40 -1.5
222,743 + GFF2173 0.42 -0.3
222,743 + GFF2173 0.42 -0.6
222,743 + GFF2173 0.42 -0.9
222,774 - GFF2173 0.44 -0.2
222,804 - GFF2173 0.47 -1.2
222,812 + GFF2173 0.47 +1.1
222,812 + GFF2173 0.47 +1.3
222,812 + GFF2173 0.47 -1.4
222,812 + GFF2173 0.47 -0.5
222,813 + GFF2173 0.47 +0.8
222,813 - GFF2173 0.47 +1.1
222,813 - GFF2173 0.47 -0.4
222,813 - GFF2173 0.47 -0.2
222,813 - GFF2173 0.47 +0.2
222,813 - GFF2173 0.47 -1.0
222,813 - GFF2173 0.47 -0.9
222,874 + GFF2173 0.52 -2.1
222,878 + GFF2173 0.52 -0.8
222,878 + GFF2173 0.52 -0.9
222,878 + GFF2173 0.52 -1.2
222,879 - GFF2173 0.52 -1.2
222,879 - GFF2173 0.52 -0.4
222,879 - GFF2173 0.52 -0.4
222,879 - GFF2173 0.52 -0.4
222,879 - GFF2173 0.52 -1.1
222,879 - GFF2173 0.52 -0.9
222,912 + GFF2173 0.55 -0.6
222,912 + GFF2173 0.55 -0.9
222,912 + GFF2173 0.55 -0.1
222,912 + GFF2173 0.55 -0.1
222,912 + GFF2173 0.55 +0.1
222,913 - GFF2173 0.55 -1.2
222,913 - GFF2173 0.55 -0.9
222,913 - GFF2173 0.55 -0.5
222,938 + GFF2173 0.57 +0.2
222,938 + GFF2173 0.57 +0.2
222,939 - GFF2173 0.57 -0.4
222,939 - GFF2173 0.57 -1.2
222,965 + GFF2173 0.59 -0.4
223,016 + GFF2173 0.63 -0.9
223,016 + GFF2173 0.63 -0.2
223,017 - GFF2173 0.63 -0.5
223,024 + GFF2173 0.64 -1.2
223,064 + GFF2173 0.67 +0.8
223,065 - GFF2173 0.67 +0.1
223,070 + GFF2173 0.67 -0.2
223,070 + GFF2173 0.67 -0.9
223,070 + GFF2173 0.67 -0.5
223,071 - GFF2173 0.68 -0.3
223,071 - GFF2173 0.68 -0.9
223,071 - GFF2173 0.68 -1.2
223,071 - GFF2173 0.68 -1.2
223,288 + GFF2173 0.85 -1.5
223,288 + GFF2173 0.85 -1.1
223,288 + GFF2173 0.85 +0.1
223,289 - GFF2173 0.85 +0.1
223,289 - GFF2173 0.85 -0.9
223,397 + -0.9
223,398 - +0.2
223,398 - -0.2
223,421 + -1.2
223,422 - +0.8
223,422 - -1.2
223,432 - -0.9
223,435 - -0.9
223,452 - -0.5
223,525 + -0.1
223,545 - -0.4
223,572 + -0.9
223,572 + -0.2
223,572 + -0.7
223,572 + -0.8
223,573 - -0.9
223,573 - -1.7
223,573 - +0.1
223,573 - +0.5
223,573 - -0.5
223,945 + GFF2174 0.37 -0.2
223,946 - GFF2174 0.37 -1.7
223,947 + GFF2174 0.37 -1.7
224,004 + GFF2174 0.43 +0.1
224,005 - GFF2174 0.43 -1.7
224,009 - GFF2174 0.44 -0.7
224,009 - GFF2174 0.44 -1.7
224,169 - GFF2174 0.61 -1.5
224,247 + GFF2174 0.69 +0.1
224,247 + GFF2174 0.69 +0.1
224,247 + GFF2174 0.69 -2.4
224,247 + GFF2174 0.69 +0.1
224,248 - GFF2174 0.69 -1.9
224,254 + GFF2174 0.70 -1.2
224,254 + GFF2174 0.70 -1.7
224,254 + GFF2174 0.70 -0.9
224,254 + GFF2174 0.70 -1.5
224,255 - GFF2174 0.70 -0.9
224,255 - GFF2174 0.70 -0.2
224,255 - GFF2174 0.70 -0.9
224,255 - GFF2174 0.70 -0.8
224,255 - GFF2174 0.70 -0.9
224,255 - GFF2174 0.70 -0.8
224,256 + GFF2174 0.70 -0.2
224,257 - GFF2174 0.70 -1.7
224,257 - GFF2174 0.70 -1.2
224,263 - GFF2174 0.71 -0.3
224,287 + GFF2174 0.73 -0.1
224,436 - GFF2174 0.89 -0.7
224,491 - -0.5
224,551 - -0.2
224,643 + -0.9
224,644 - -0.9
224,811 + GFF2175 0.20 -1.2
224,812 - GFF2175 0.20 -0.9
225,037 - GFF2175 0.37 -0.9
225,152 + GFF2175 0.45 -0.9
225,208 - GFF2175 0.50 -1.5
225,208 - GFF2175 0.50 -1.9
225,208 - GFF2175 0.50 -1.2
225,254 + GFF2175 0.53 -0.1
225,255 - GFF2175 0.53 -0.9
225,315 + GFF2175 0.58 -0.9
225,450 - GFF2175 0.68 -0.9

Or see this region's nucleotide sequence