Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2162 and GFF2163 are separated by 107 nucleotides GFF2163 and GFF2164 are separated by 93 nucleotides
GFF2162 - hypothetical protein, at 210,846 to 213,062
GFF2162
GFF2163 - hypothetical protein, at 213,170 to 213,319
GFF2163
GFF2164 - hypothetical protein, at 213,413 to 214,156
GFF2164
Position (kb) 210
211
212
213
214 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 209.945 kb on - strand at 209.975 kb on + strand at 209.975 kb on + strand at 210.231 kb on + strand at 210.231 kb on + strand at 210.232 kb on - strand at 210.232 kb on - strand at 210.279 kb on + strand at 210.321 kb on + strand at 210.509 kb on - strand at 210.509 kb on - strand at 210.585 kb on + strand at 210.586 kb on - strand at 210.592 kb on - strand at 210.636 kb on - strand at 210.684 kb on + strand at 210.757 kb on + strand at 210.757 kb on + strand at 210.758 kb on - strand at 210.761 kb on + strand at 210.762 kb on - strand at 210.762 kb on - strand at 210.882 kb on + strand at 210.922 kb on + strand at 211.002 kb on + strand at 211.002 kb on + strand at 211.003 kb on - strand at 211.003 kb on - strand at 211.163 kb on + strand, within GFF2162 at 211.214 kb on - strand, within GFF2162 at 211.224 kb on + strand, within GFF2162 at 211.304 kb on + strand, within GFF2162 at 211.309 kb on + strand, within GFF2162 at 211.345 kb on - strand, within GFF2162 at 211.392 kb on + strand, within GFF2162 at 211.393 kb on - strand, within GFF2162 at 211.591 kb on + strand, within GFF2162 at 211.591 kb on + strand, within GFF2162 at 211.690 kb on - strand, within GFF2162 at 211.914 kb on + strand, within GFF2162 at 211.915 kb on - strand, within GFF2162 at 211.915 kb on - strand, within GFF2162 at 211.961 kb on - strand, within GFF2162 at 212.201 kb on + strand, within GFF2162 at 212.287 kb on + strand, within GFF2162 at 212.287 kb on + strand, within GFF2162 at 212.427 kb on + strand, within GFF2162 at 212.427 kb on + strand, within GFF2162 at 212.427 kb on + strand, within GFF2162 at 212.427 kb on + strand, within GFF2162 at 212.428 kb on - strand, within GFF2162 at 212.428 kb on - strand, within GFF2162 at 212.435 kb on + strand, within GFF2162 at 212.435 kb on + strand, within GFF2162 at 212.435 kb on + strand, within GFF2162 at 212.436 kb on - strand, within GFF2162 at 212.549 kb on + strand, within GFF2162 at 212.549 kb on + strand, within GFF2162 at 212.550 kb on - strand, within GFF2162 at 212.582 kb on + strand, within GFF2162 at 212.655 kb on + strand, within GFF2162 at 212.711 kb on + strand, within GFF2162 at 212.712 kb on - strand, within GFF2162 at 212.712 kb on - strand, within GFF2162 at 212.753 kb on + strand, within GFF2162 at 212.756 kb on + strand, within GFF2162 at 212.757 kb on - strand, within GFF2162 at 212.785 kb on + strand, within GFF2162 at 212.801 kb on - strand, within GFF2162 at 212.918 kb on - strand at 212.918 kb on - strand at 212.918 kb on - strand at 212.920 kb on - strand at 213.067 kb on + strand at 213.067 kb on + strand at 213.067 kb on + strand at 213.067 kb on + strand at 213.067 kb on + strand at 213.067 kb on + strand at 213.067 kb on + strand at 213.068 kb on - strand at 213.068 kb on - strand at 213.069 kb on + strand at 213.069 kb on + strand at 213.069 kb on + strand at 213.069 kb on + strand at 213.070 kb on - strand at 213.070 kb on - strand at 213.114 kb on + strand at 213.142 kb on + strand at 213.142 kb on + strand at 213.142 kb on + strand at 213.145 kb on + strand at 213.145 kb on + strand at 213.145 kb on + strand at 213.145 kb on + strand at 213.146 kb on - strand at 213.161 kb on + strand at 213.171 kb on + strand at 213.171 kb on + strand at 213.172 kb on - strand at 213.182 kb on + strand at 213.182 kb on + strand at 213.182 kb on + strand at 213.202 kb on + strand, within GFF2163 at 213.203 kb on - strand, within GFF2163 at 213.203 kb on - strand, within GFF2163 at 213.203 kb on - strand, within GFF2163 at 213.203 kb on - strand, within GFF2163 at 213.203 kb on - strand, within GFF2163 at 213.203 kb on - strand, within GFF2163 at 213.203 kb on - strand, within GFF2163 at 213.211 kb on + strand, within GFF2163 at 213.249 kb on + strand, within GFF2163 at 213.249 kb on + strand, within GFF2163 at 213.249 kb on + strand, within GFF2163 at 213.249 kb on + strand, within GFF2163 at 213.249 kb on + strand, within GFF2163 at 213.249 kb on + strand, within GFF2163 at 213.249 kb on + strand, within GFF2163 at 213.250 kb on - strand, within GFF2163 at 213.250 kb on - strand, within GFF2163 at 213.250 kb on - strand, within GFF2163 at 213.250 kb on - strand, within GFF2163 at 213.250 kb on - strand, within GFF2163 at 213.253 kb on + strand, within GFF2163 at 213.253 kb on + strand, within GFF2163 at 213.253 kb on + strand, within GFF2163 at 213.253 kb on + strand, within GFF2163 at 213.253 kb on + strand, within GFF2163 at 213.253 kb on + strand, within GFF2163 at 213.253 kb on + strand, within GFF2163 at 213.253 kb on + strand, within GFF2163 at 213.253 kb on + strand, within GFF2163 at 213.253 kb on + strand, within GFF2163 at 213.253 kb on + strand, within GFF2163 at 213.253 kb on + strand, within GFF2163 at 213.253 kb on + strand, within GFF2163 at 213.253 kb on + strand, within GFF2163 at 213.254 kb on - strand, within GFF2163 at 213.254 kb on - strand, within GFF2163 at 213.254 kb on - strand, within GFF2163 at 213.254 kb on - strand, within GFF2163 at 213.254 kb on - strand, within GFF2163 at 213.254 kb on - strand, within GFF2163 at 213.257 kb on + strand, within GFF2163 at 213.257 kb on + strand, within GFF2163 at 213.257 kb on + strand, within GFF2163 at 213.257 kb on + strand, within GFF2163 at 213.257 kb on + strand, within GFF2163 at 213.257 kb on + strand, within GFF2163 at 213.257 kb on + strand, within GFF2163 at 213.257 kb on + strand, within GFF2163 at 213.257 kb on + strand, within GFF2163 at 213.257 kb on + strand, within GFF2163 at 213.257 kb on + strand, within GFF2163 at 213.257 kb on + strand, within GFF2163 at 213.257 kb on + strand, within GFF2163 at 213.257 kb on + strand, within GFF2163 at 213.258 kb on - strand, within GFF2163 at 213.258 kb on - strand, within GFF2163 at 213.258 kb on - strand, within GFF2163 at 213.258 kb on - strand, within GFF2163 at 213.258 kb on - strand, within GFF2163 at 213.258 kb on - strand, within GFF2163 at 213.258 kb on - strand, within GFF2163 at 213.258 kb on - strand, within GFF2163 at 213.258 kb on - strand, within GFF2163 at 213.258 kb on - strand, within GFF2163 at 213.258 kb on - strand, within GFF2163 at 213.258 kb on - strand, within GFF2163 at 213.258 kb on - strand, within GFF2163 at 213.259 kb on - strand, within GFF2163 at 213.263 kb on - strand, within GFF2163 at 213.263 kb on - strand, within GFF2163 at 213.263 kb on - strand, within GFF2163 at 213.272 kb on + strand, within GFF2163 at 213.272 kb on + strand, within GFF2163 at 213.273 kb on - strand, within GFF2163 at 213.273 kb on - strand, within GFF2163 at 213.305 kb on - strand at 213.327 kb on + strand at 213.328 kb on - strand at 213.335 kb on + strand at 213.336 kb on - strand at 213.336 kb on - strand at 213.412 kb on + strand at 213.412 kb on + strand at 213.413 kb on - strand at 213.413 kb on - strand at 213.462 kb on + strand at 213.540 kb on - strand, within GFF2164 at 213.540 kb on - strand, within GFF2164 at 213.540 kb on - strand, within GFF2164 at 213.540 kb on - strand, within GFF2164 at 213.540 kb on - strand, within GFF2164 at 213.554 kb on - strand, within GFF2164 at 213.648 kb on + strand, within GFF2164 at 213.648 kb on + strand, within GFF2164 at 213.648 kb on + strand, within GFF2164 at 213.649 kb on - strand, within GFF2164 at 213.735 kb on - strand, within GFF2164 at 213.741 kb on + strand, within GFF2164 at 213.772 kb on + strand, within GFF2164 at 213.772 kb on + strand, within GFF2164 at 213.773 kb on - strand, within GFF2164 at 213.777 kb on + strand, within GFF2164 at 213.778 kb on - strand, within GFF2164 at 213.778 kb on - strand, within GFF2164 at 213.778 kb on - strand, within GFF2164 at 213.811 kb on + strand, within GFF2164 at 213.812 kb on - strand, within GFF2164 at 213.836 kb on - strand, within GFF2164 at 213.863 kb on + strand, within GFF2164 at 213.863 kb on + strand, within GFF2164 at 213.863 kb on + strand, within GFF2164 at 213.863 kb on + strand, within GFF2164 at 213.863 kb on + strand, within GFF2164 at 213.863 kb on + strand, within GFF2164 at 213.864 kb on - strand, within GFF2164 at 213.864 kb on - strand, within GFF2164 at 213.864 kb on - strand, within GFF2164 at 213.864 kb on - strand, within GFF2164 at 213.864 kb on - strand, within GFF2164 at 213.898 kb on - strand, within GFF2164 at 213.998 kb on + strand, within GFF2164 at 213.998 kb on + strand, within GFF2164 at 213.998 kb on + strand, within GFF2164 at 213.999 kb on - strand, within GFF2164 at 213.999 kb on - strand, within GFF2164 at 213.999 kb on - strand, within GFF2164 at 213.999 kb on - strand, within GFF2164 at 213.999 kb on - strand, within GFF2164 at 214.022 kb on + strand, within GFF2164 at 214.022 kb on + strand, within GFF2164 at 214.022 kb on + strand, within GFF2164 at 214.022 kb on + strand, within GFF2164 at 214.024 kb on + strand, within GFF2164 at 214.024 kb on + strand, within GFF2164 at 214.024 kb on + strand, within GFF2164 at 214.024 kb on + strand, within GFF2164 at 214.024 kb on + strand, within GFF2164 at 214.025 kb on - strand, within GFF2164 at 214.025 kb on - strand, within GFF2164 at 214.025 kb on - strand, within GFF2164 at 214.025 kb on - strand, within GFF2164 at 214.052 kb on + strand, within GFF2164 at 214.053 kb on - strand, within GFF2164 at 214.053 kb on - strand, within GFF2164
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 209,945 - -0.7 209,975 + +0.6 209,975 + -0.5 210,231 + -0.1 210,231 + -0.2 210,232 - -0.2 210,232 - -0.2 210,279 + -0.3 210,321 + -1.5 210,509 - +0.1 210,509 - -0.5 210,585 + -0.2 210,586 - +0.3 210,592 - +0.3 210,636 - -0.5 210,684 + +1.1 210,757 + -1.7 210,757 + -0.9 210,758 - -0.9 210,761 + -1.2 210,762 - -0.6 210,762 - +0.5 210,882 + -2.4 210,922 + -1.2 211,002 + -1.5 211,002 + -0.9 211,003 - -0.9 211,003 - -1.5 211,163 + GFF2162 0.14 -0.2 211,214 - GFF2162 0.17 -0.9 211,224 + GFF2162 0.17 -0.7 211,304 + GFF2162 0.21 -1.2 211,309 + GFF2162 0.21 -0.2 211,345 - GFF2162 0.23 +0.1 211,392 + GFF2162 0.25 -0.9 211,393 - GFF2162 0.25 +0.1 211,591 + GFF2162 0.34 -1.2 211,591 + GFF2162 0.34 -0.3 211,690 - GFF2162 0.38 -1.9 211,914 + GFF2162 0.48 -1.7 211,915 - GFF2162 0.48 -1.5 211,915 - GFF2162 0.48 -1.2 211,961 - GFF2162 0.50 -1.5 212,201 + GFF2162 0.61 -0.7 212,287 + GFF2162 0.65 -1.2 212,287 + GFF2162 0.65 +0.1 212,427 + GFF2162 0.71 -1.2 212,427 + GFF2162 0.71 -0.5 212,427 + GFF2162 0.71 -0.2 212,427 + GFF2162 0.71 -0.2 212,428 - GFF2162 0.71 +0.8 212,428 - GFF2162 0.71 -1.2 212,435 + GFF2162 0.72 -0.9 212,435 + GFF2162 0.72 -1.2 212,435 + GFF2162 0.72 +0.1 212,436 - GFF2162 0.72 -2.1 212,549 + GFF2162 0.77 -1.5 212,549 + GFF2162 0.77 -1.7 212,550 - GFF2162 0.77 -1.5 212,582 + GFF2162 0.78 -0.2 212,655 + GFF2162 0.82 -1.7 212,711 + GFF2162 0.84 -0.9 212,712 - GFF2162 0.84 -0.7 212,712 - GFF2162 0.84 -0.2 212,753 + GFF2162 0.86 +0.7 212,756 + GFF2162 0.86 -1.5 212,757 - GFF2162 0.86 +0.1 212,785 + GFF2162 0.87 +0.5 212,801 - GFF2162 0.88 +0.1 212,918 - -0.9 212,918 - -0.9 212,918 - -0.5 212,920 - -1.2 213,067 + -0.7 213,067 + -0.2 213,067 + +0.8 213,067 + -0.7 213,067 + -0.0 213,067 + -1.5 213,067 + +0.4 213,068 - -0.9 213,068 - +0.7 213,069 + +0.4 213,069 + -0.4 213,069 + +1.4 213,069 + -0.2 213,070 - -0.7 213,070 - +0.7 213,114 + +0.3 213,142 + -0.5 213,142 + -0.7 213,142 + -0.0 213,145 + -0.1 213,145 + -0.9 213,145 + -0.3 213,145 + -1.2 213,146 - -0.5 213,161 + -2.1 213,171 + -1.2 213,171 + -0.7 213,172 - +1.2 213,182 + +0.8 213,182 + -0.4 213,182 + +1.9 213,202 + GFF2163 0.21 -1.3 213,203 - GFF2163 0.22 -0.4 213,203 - GFF2163 0.22 -0.7 213,203 - GFF2163 0.22 -0.5 213,203 - GFF2163 0.22 +0.7 213,203 - GFF2163 0.22 +0.7 213,203 - GFF2163 0.22 -0.1 213,203 - GFF2163 0.22 -0.2 213,211 + GFF2163 0.27 -0.9 213,249 + GFF2163 0.53 -0.4 213,249 + GFF2163 0.53 -0.4 213,249 + GFF2163 0.53 -1.2 213,249 + GFF2163 0.53 -0.7 213,249 + GFF2163 0.53 -0.2 213,249 + GFF2163 0.53 -0.0 213,249 + GFF2163 0.53 +0.1 213,250 - GFF2163 0.53 -0.9 213,250 - GFF2163 0.53 -0.6 213,250 - GFF2163 0.53 -1.8 213,250 - GFF2163 0.53 -0.7 213,250 - GFF2163 0.53 -1.0 213,253 + GFF2163 0.55 -0.7 213,253 + GFF2163 0.55 +0.0 213,253 + GFF2163 0.55 +0.0 213,253 + GFF2163 0.55 -0.9 213,253 + GFF2163 0.55 -0.9 213,253 + GFF2163 0.55 -1.7 213,253 + GFF2163 0.55 -0.0 213,253 + GFF2163 0.55 +0.1 213,253 + GFF2163 0.55 -0.7 213,253 + GFF2163 0.55 +0.8 213,253 + GFF2163 0.55 -1.0 213,253 + GFF2163 0.55 -2.4 213,253 + GFF2163 0.55 +1.0 213,253 + GFF2163 0.55 -0.2 213,254 - GFF2163 0.56 -1.7 213,254 - GFF2163 0.56 +0.1 213,254 - GFF2163 0.56 -1.2 213,254 - GFF2163 0.56 -0.1 213,254 - GFF2163 0.56 -0.9 213,254 - GFF2163 0.56 -0.9 213,257 + GFF2163 0.58 -0.2 213,257 + GFF2163 0.58 -0.3 213,257 + GFF2163 0.58 -0.3 213,257 + GFF2163 0.58 +0.1 213,257 + GFF2163 0.58 -0.2 213,257 + GFF2163 0.58 +0.5 213,257 + GFF2163 0.58 +0.7 213,257 + GFF2163 0.58 -1.7 213,257 + GFF2163 0.58 -0.1 213,257 + GFF2163 0.58 +0.8 213,257 + GFF2163 0.58 -0.3 213,257 + GFF2163 0.58 -1.0 213,257 + GFF2163 0.58 -0.9 213,257 + GFF2163 0.58 -0.1 213,258 - GFF2163 0.59 -0.8 213,258 - GFF2163 0.59 -1.9 213,258 - GFF2163 0.59 -0.3 213,258 - GFF2163 0.59 +0.8 213,258 - GFF2163 0.59 -2.6 213,258 - GFF2163 0.59 -0.7 213,258 - GFF2163 0.59 -2.2 213,258 - GFF2163 0.59 -0.9 213,258 - GFF2163 0.59 +0.3 213,258 - GFF2163 0.59 -1.7 213,258 - GFF2163 0.59 -1.0 213,258 - GFF2163 0.59 -0.3 213,258 - GFF2163 0.59 +0.8 213,259 - GFF2163 0.59 -1.5 213,263 - GFF2163 0.62 -0.9 213,263 - GFF2163 0.62 -0.1 213,263 - GFF2163 0.62 +0.3 213,272 + GFF2163 0.68 -0.2 213,272 + GFF2163 0.68 -1.2 213,273 - GFF2163 0.69 -0.8 213,273 - GFF2163 0.69 -0.9 213,305 - -0.4 213,327 + -1.6 213,328 - +0.8 213,335 + -0.8 213,336 - -0.9 213,336 - -0.5 213,412 + +0.6 213,412 + -1.9 213,413 - +0.1 213,413 - -3.0 213,462 + +0.1 213,540 - GFF2164 0.17 +0.1 213,540 - GFF2164 0.17 -0.2 213,540 - GFF2164 0.17 -2.1 213,540 - GFF2164 0.17 -0.8 213,540 - GFF2164 0.17 -0.7 213,554 - GFF2164 0.19 -0.6 213,648 + GFF2164 0.32 +1.1 213,648 + GFF2164 0.32 -0.3 213,648 + GFF2164 0.32 +0.3 213,649 - GFF2164 0.32 +0.1 213,735 - GFF2164 0.43 +0.1 213,741 + GFF2164 0.44 -0.4 213,772 + GFF2164 0.48 -1.1 213,772 + GFF2164 0.48 +0.1 213,773 - GFF2164 0.48 +0.0 213,777 + GFF2164 0.49 -0.2 213,778 - GFF2164 0.49 -0.8 213,778 - GFF2164 0.49 -0.0 213,778 - GFF2164 0.49 -0.5 213,811 + GFF2164 0.53 +0.3 213,812 - GFF2164 0.54 +0.1 213,836 - GFF2164 0.57 -0.3 213,863 + GFF2164 0.60 -1.5 213,863 + GFF2164 0.60 -1.2 213,863 + GFF2164 0.60 +0.1 213,863 + GFF2164 0.60 +0.1 213,863 + GFF2164 0.60 -0.8 213,863 + GFF2164 0.60 +0.1 213,864 - GFF2164 0.61 +0.7 213,864 - GFF2164 0.61 +1.1 213,864 - GFF2164 0.61 -1.7 213,864 - GFF2164 0.61 +0.1 213,864 - GFF2164 0.61 -0.4 213,898 - GFF2164 0.65 -1.2 213,998 + GFF2164 0.79 +0.3 213,998 + GFF2164 0.79 -0.9 213,998 + GFF2164 0.79 -0.2 213,999 - GFF2164 0.79 +0.7 213,999 - GFF2164 0.79 -0.7 213,999 - GFF2164 0.79 -0.3 213,999 - GFF2164 0.79 -1.2 213,999 - GFF2164 0.79 -0.9 214,022 + GFF2164 0.82 -1.2 214,022 + GFF2164 0.82 -0.2 214,022 + GFF2164 0.82 -1.2 214,022 + GFF2164 0.82 +0.1 214,024 + GFF2164 0.82 +0.1 214,024 + GFF2164 0.82 -0.6 214,024 + GFF2164 0.82 -1.3 214,024 + GFF2164 0.82 +0.2 214,024 + GFF2164 0.82 -1.2 214,025 - GFF2164 0.82 -0.9 214,025 - GFF2164 0.82 +0.4 214,025 - GFF2164 0.82 -0.7 214,025 - GFF2164 0.82 -0.7 214,052 + GFF2164 0.86 -0.2 214,053 - GFF2164 0.86 -1.2 214,053 - GFF2164 0.86 -2.0
Or see this region's nucleotide sequence